Wall clock time and date at job start Tue Mar 31 2020 10:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.47226 * 2 1 4 4 C 1.34224 * 117.00068 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00202 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99813 * 180.02562 * 4 3 2 7 7 H 1.08996 * 108.70067 * 303.20046 * 6 4 3 8 8 C 1.54558 * 108.75265 * 61.45716 * 6 4 3 9 9 S 1.84213 * 101.32529 * 144.06557 * 8 6 4 10 10 C 1.84069 * 93.91014 * 327.73836 * 9 8 6 11 11 N 1.45500 * 108.75505 * 185.09547 * 6 4 3 12 12 C 1.34784 * 122.43051 * 60.12760 * 11 6 4 13 13 O 1.21283 * 119.99359 * 0.02562 * 12 11 6 14 14 C 1.50696 * 120.00088 * 180.02562 * 12 11 6 15 15 C 1.53003 * 109.47091 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47244 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.47244 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47091 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00007 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99726 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99860 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99723 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47476 * 59.99800 * 22 20 18 24 24 H 1.48504 * 109.47206 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47208 * 299.99509 * 22 20 18 26 26 H 1.09002 * 109.47153 * 299.99431 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99603 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00540 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00569 * 2 1 3 31 31 H 1.09003 * 111.05173 * 262.07634 * 8 6 4 32 32 H 1.08996 * 111.05404 * 26.01700 * 8 6 4 33 33 H 1.09002 * 110.77572 * 151.72145 * 10 9 8 34 34 H 1.09000 * 110.78358 * 274.95952 * 10 9 8 35 35 H 1.08999 * 109.46684 * 299.99539 * 14 12 11 36 36 H 1.08990 * 109.47813 * 60.00100 * 14 12 11 37 37 H 1.09000 * 109.46789 * 299.99782 * 15 14 12 38 38 H 1.09006 * 109.47223 * 59.99485 * 15 14 12 39 39 H 1.09000 * 109.47277 * 299.99762 * 16 15 14 40 40 H 1.08998 * 109.46904 * 59.99791 * 16 15 14 41 41 H 1.09000 * 109.46789 * 300.00060 * 17 16 15 42 42 H 1.09001 * 109.47312 * 59.99291 * 17 16 15 43 43 H 0.97000 * 119.99349 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.5321 3.4767 -0.8627 8 6 3.4639 3.6635 1.2869 9 16 4.9543 4.6714 1.6821 10 6 6.1298 3.4301 0.9999 11 7 5.3676 2.8453 -0.1207 12 6 5.9685 2.2682 -1.1802 13 8 5.2986 1.8020 -2.0774 14 6 7.4724 2.2022 -1.2500 15 6 7.8927 1.5036 -2.5447 16 6 9.4196 1.4371 -2.6158 17 6 9.8399 0.7391 -3.9109 18 6 11.3438 0.6731 -3.9806 19 1 11.9402 1.0879 -3.1814 20 6 11.9584 0.0841 -5.0653 21 7 11.2321 -0.4205 -6.0386 22 14 13.8226 0.0029 -5.1520 23 1 14.3396 -0.7610 -3.9882 24 1 14.2306 -0.6747 -6.4089 25 1 14.3797 1.3792 -5.1278 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 2.6011 4.3004 1.0914 32 1 3.2496 2.9513 2.0836 33 1 7.0373 3.9143 0.6392 34 1 6.3683 2.6723 1.7462 35 1 7.8815 3.2123 -1.2333 36 1 7.8516 1.6424 -0.3951 37 1 7.4835 0.4935 -2.5618 38 1 7.5135 2.0638 -3.3995 39 1 9.8284 2.4474 -2.5989 40 1 9.7990 0.8772 -1.7611 41 1 9.4310 -0.2711 -3.9283 42 1 9.4603 1.2994 -4.7653 43 1 11.6646 -0.8352 -6.8015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907900238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:33 Heat of formation + Delta-G solvation = -149.878195 kcal Electronic energy + Delta-G solvation = -24042.027019 eV Core-core repulsion = 20405.530428 eV Total energy + Delta-G solvation = -3636.496591 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.18968 -40.75465 -38.08596 -37.31936 -36.63798 -34.68466 -33.40534 -32.34189 -31.18481 -28.57522 -27.61663 -25.93257 -24.68420 -23.60066 -22.37113 -21.67823 -20.48915 -19.25072 -18.72585 -18.37962 -18.18618 -17.56335 -17.46563 -16.79018 -16.54556 -16.38259 -15.66210 -15.49686 -15.06732 -14.73736 -14.62528 -14.56076 -14.23944 -13.90061 -13.67291 -13.63269 -13.47522 -13.26534 -13.07210 -12.93111 -12.79478 -12.59577 -12.38640 -12.29362 -12.18165 -12.17381 -11.63003 -11.49153 -11.39981 -11.33074 -11.17129 -10.89785 -10.54866 -10.17084 -8.97929 -8.18950 -6.31300 0.45928 0.73906 0.97313 1.09646 1.40060 1.44335 1.51986 1.52801 1.79726 2.41772 2.92194 3.13727 3.39249 3.47962 3.77144 3.92559 3.94019 3.97476 4.01446 4.12528 4.23032 4.27249 4.32603 4.35137 4.55901 4.64094 4.71935 4.76370 4.82242 4.88138 4.94051 5.07747 5.14663 5.30875 5.33653 5.33975 5.55157 5.76715 5.86954 5.87298 6.24536 6.51626 6.86980 6.91100 7.38328 8.93279 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.002558 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.206194 B =10942.576762 C =12276.615426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 O -0.352 6.352 4 C 0.452 3.548 5 O -0.523 6.523 6 C 0.141 3.859 7 H 0.128 0.872 8 C -0.048 4.048 9 S -0.253 6.253 10 C 0.147 3.853 11 N -0.609 5.609 12 C 0.533 3.467 13 O -0.565 6.565 14 C -0.123 4.123 15 C -0.095 4.095 16 C -0.094 4.094 17 C 0.019 3.981 18 C -0.542 4.542 19 H 0.068 0.932 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.265 1.265 24 H -0.286 1.286 25 H -0.263 1.263 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.164 0.836 32 H 0.116 0.884 33 H 0.146 0.854 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.036 0.964 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.060 0.940 41 H -0.019 1.019 42 H -0.015 1.015 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.402 10.396 21.579 32.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 O -0.268 6.268 4 C 0.293 3.707 5 O -0.411 6.411 6 C 0.033 3.967 7 H 0.145 0.855 8 C -0.196 4.196 9 S -0.026 6.026 10 C -0.085 4.085 11 N -0.345 5.345 12 C 0.323 3.677 13 O -0.442 6.442 14 C -0.162 4.162 15 C -0.133 4.133 16 C -0.131 4.131 17 C -0.018 4.018 18 C -0.580 4.580 19 H 0.086 0.914 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.794 3.206 23 H -0.189 1.189 24 H -0.211 1.211 25 H -0.188 1.188 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.182 0.818 32 H 0.135 0.865 33 H 0.163 0.837 34 H 0.133 0.867 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.000 1.000 42 H 0.004 0.996 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.383 10.858 21.468 32.187 hybrid contribution 0.653 -1.935 -1.306 2.424 sum -20.730 8.923 20.161 30.263 Atomic orbital electron populations 1.21815 0.89634 1.04441 1.04100 1.23286 0.97496 0.79077 1.02051 1.86460 1.22953 1.33719 1.83648 1.24294 0.81375 0.93043 0.72005 1.90700 1.61253 1.43828 1.45308 1.20989 0.82199 0.89911 1.03589 0.85480 1.24518 0.99543 1.00413 0.95166 1.88575 1.03637 1.29363 1.81002 1.24625 0.97278 0.96652 0.89963 1.48431 1.04155 1.60209 1.21735 1.21180 0.91925 0.74924 0.79636 1.90707 1.67433 1.46725 1.39365 1.21723 0.88673 1.05220 1.00612 1.21244 0.96063 0.99477 0.96498 1.21434 0.93273 1.00577 0.97860 1.19050 0.95243 0.93960 0.93581 1.21726 0.93168 1.37581 1.05482 0.91423 1.26114 1.04114 0.94968 0.95292 1.70133 1.37736 1.40028 1.10045 0.85424 0.78722 0.78896 0.77537 1.18939 1.21129 1.18750 0.90158 0.88443 0.91406 0.90992 0.92989 0.81775 0.86545 0.83651 0.86717 0.85299 0.86408 0.94474 0.93466 0.91537 0.92120 1.00030 0.99624 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 10.29 71.98 0.74 -0.71 16 2 C 0.05 0.96 6.19 71.98 0.45 1.41 16 3 O -0.35 -7.06 10.16 -51.36 -0.52 -7.58 16 4 C 0.45 10.99 6.39 71.24 0.45 11.45 16 5 O -0.52 -17.10 14.64 27.67 0.41 -16.70 16 6 C 0.14 2.58 2.95 44.96 0.13 2.71 16 7 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 8 C -0.05 -0.48 6.99 72.51 0.51 0.03 16 9 S -0.25 -3.15 23.43 -56.49 -1.32 -4.47 16 10 C 0.15 1.93 7.21 127.56 0.92 2.85 16 11 N -0.61 -12.69 2.73 -807.48 -2.20 -14.89 16 12 C 0.53 15.46 6.78 87.65 0.59 16.06 16 13 O -0.57 -21.98 14.82 13.34 0.20 -21.79 16 14 C -0.12 -3.15 4.49 29.85 0.13 -3.01 16 15 C -0.09 -3.52 4.50 30.59 0.14 -3.38 16 16 C -0.09 -3.87 5.15 30.59 0.16 -3.71 16 17 C 0.02 1.05 4.97 29.85 0.15 1.20 16 18 C -0.54 -31.67 9.11 25.60 0.23 -31.43 16 19 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 20 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 21 N -0.94 -59.81 13.29 21.45 0.28 -59.52 16 22 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 23 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 24 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 26 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 30 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 31 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.12 0.98 7.85 -2.39 -0.02 0.96 16 33 H 0.15 1.35 7.13 -2.39 -0.02 1.33 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.13 2.42 7.63 -2.39 -0.02 2.40 16 36 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 38 H 0.05 1.89 8.10 -2.38 -0.02 1.87 16 39 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 41 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 42 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 43 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -83.11 371.09 4.91 -78.19 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 0.98 Total: 6.16 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 5.07 Total: -6.55 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -1.92 Total: -74.42 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: 0.08 Total: -46.07 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -1.32 Total: -4.47 kcal Total: -83.11 4.91 -78.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907900238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.685 kcal (2) G-P(sol) polarization free energy of solvation -83.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds