Wall clock time and date at job start Tue Mar 31 2020 10:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35762 * 116.99466 * 2 1 4 4 C 1.38079 * 120.20650 * 359.72973 * 3 2 1 5 5 C 1.38741 * 120.40225 * 179.75533 * 4 3 2 6 6 C 1.37769 * 120.73216 * 0.50030 * 5 4 3 7 7 C 1.39164 * 120.07930 * 359.75972 * 6 5 4 8 8 N 1.37520 * 133.05054 * 179.97438 * 7 6 5 9 9 H 0.97001 * 125.62745 * 0.02562 * 8 7 6 10 10 C 1.38336 * 108.74217 * 180.02562 * 8 7 6 11 11 C 1.46738 * 125.46673 * 180.02562 * 10 8 7 12 12 O 1.21595 * 120.00230 * 175.00334 * 11 10 8 13 13 O 1.34872 * 120.00208 * 355.00863 * 11 10 8 14 14 C 1.45201 * 117.00168 * 185.18376 * 13 11 10 15 15 C 1.53003 * 109.46952 * 184.21735 * 14 13 11 16 16 C 1.50699 * 115.55086 * 64.76792 * 15 14 13 17 17 H 1.08001 * 119.99959 * 266.67896 * 16 15 14 18 18 C 1.37877 * 119.99963 * 86.67107 * 16 15 14 19 19 N 1.31520 * 119.99865 * 178.71195 * 18 16 15 20 20 Si 1.86802 * 120.00081 * 358.71735 * 18 16 15 21 21 H 1.48494 * 109.47080 * 90.86507 * 20 18 16 22 22 H 1.48503 * 109.46969 * 210.86714 * 20 18 16 23 23 H 1.48504 * 109.46995 * 330.86533 * 20 18 16 24 24 C 1.52999 * 117.50259 * 279.09712 * 15 14 13 25 25 C 1.53000 * 117.49983 * 210.43663 * 15 14 13 26 26 C 1.36023 * 109.06372 * 0.02562 * 10 8 7 27 27 C 1.40580 * 120.19958 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47087 * 299.99508 * 1 2 3 29 29 H 1.09005 * 109.46993 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47487 * 59.99609 * 1 2 3 31 31 H 1.07995 * 119.79654 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.63354 * 180.28455 * 5 4 3 33 33 H 1.07995 * 119.96584 * 179.78380 * 6 5 4 34 34 H 1.08993 * 109.46865 * 304.21619 * 14 13 11 35 35 H 1.08999 * 109.47201 * 64.22099 * 14 13 11 36 36 H 0.97002 * 119.99230 * 180.02562 * 19 18 16 37 37 H 1.09007 * 117.49772 * 0.02562 * 24 15 14 38 38 H 1.08999 * 117.50156 * 145.01980 * 24 15 14 39 39 H 1.08995 * 117.50042 * 214.98449 * 25 15 14 40 40 H 1.08999 * 117.49475 * 359.97438 * 25 15 14 41 41 H 1.08004 * 126.11948 * 179.97438 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2973 2.3704 -0.0056 5 6 1.9228 3.6088 -0.0005 6 6 3.2973 3.7033 -0.0002 7 6 4.0757 2.5498 0.0002 8 7 5.4339 2.3338 0.0001 9 1 6.1157 3.0237 0.0002 10 6 5.6671 0.9702 -0.0001 11 6 6.9886 0.3325 0.0004 12 8 7.0803 -0.8766 0.0919 13 8 8.1018 1.0873 -0.1006 14 6 9.3674 0.3841 -0.2103 15 6 10.5149 1.3962 -0.2087 16 6 10.6847 2.1843 1.0646 17 1 10.2098 3.1485 1.1702 18 6 11.4461 1.6743 2.0946 19 7 11.6152 2.3731 3.1959 20 14 12.2378 -0.0093 1.9261 21 1 13.5982 0.1390 1.3496 22 1 12.3337 -0.6473 3.2636 23 1 11.4107 -0.8578 1.0310 24 6 10.8330 2.1057 -1.5263 25 6 11.7802 1.0308 -0.9874 26 6 4.4748 0.3156 -0.0007 27 6 3.4489 1.2883 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 0.2189 2.3138 -0.0105 32 1 1.3256 4.5087 -0.0004 33 1 3.7712 4.6737 0.0003 34 1 9.4803 -0.2945 0.6351 35 1 9.3871 -0.1859 -1.1391 36 1 12.1512 2.0144 3.9204 37 1 10.2245 1.8518 -2.3944 38 1 11.1654 3.1424 -1.4723 39 1 12.7354 1.3607 -0.5789 40 1 11.7953 0.0693 -1.5004 41 1 4.3366 -0.7556 -0.0013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923530780.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:11 Heat of formation + Delta-G solvation = -33.220391 kcal Electronic energy + Delta-G solvation = -25269.686552 eV Core-core repulsion = 21502.804672 eV Total energy + Delta-G solvation = -3766.881880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.68338 -39.85398 -39.11196 -37.18214 -36.13337 -35.51982 -32.15791 -31.93227 -29.91391 -28.86333 -27.77602 -27.13719 -25.47370 -23.92108 -22.04915 -21.80598 -21.48242 -20.08168 -19.23262 -18.72376 -17.80681 -16.94736 -16.30550 -16.08427 -15.97029 -15.87630 -15.60687 -15.40938 -14.91839 -14.34138 -14.12640 -13.73813 -13.64959 -13.08191 -13.01067 -12.66233 -12.64315 -12.52679 -12.24631 -12.09755 -11.69376 -11.26149 -11.19616 -11.07268 -10.94515 -10.64904 -10.47726 -10.25381 -10.05147 -9.69572 -9.61696 -9.10272 -8.65569 -8.64697 -8.46422 -7.58169 -6.17308 -4.21079 0.68238 1.42867 1.97927 2.76406 2.97952 3.17228 3.24172 3.30096 3.34928 3.37358 3.69047 4.35571 4.58566 4.69231 4.76780 4.86928 4.90112 4.91897 5.07109 5.11422 5.18034 5.22981 5.27781 5.43531 5.57865 5.61140 5.88382 5.89137 5.91311 6.04368 6.07466 6.15899 6.31280 6.36069 6.41011 6.47243 6.60533 6.73740 6.80383 6.98121 7.00792 7.23027 7.38137 7.62992 8.09237 8.43088 8.85909 9.44635 10.94373 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.021746 B = 0.002992 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.267981 B = 9355.233231 C = 9639.800562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.189 3.811 4 C -0.253 4.253 5 C -0.048 4.048 6 C -0.169 4.169 7 C 0.153 3.847 8 N -0.560 5.560 9 H 0.433 0.567 10 C 0.035 3.965 11 C 0.524 3.476 12 O -0.502 6.502 13 O -0.332 6.332 14 C 0.109 3.891 15 C -0.006 4.006 16 C -0.485 4.485 17 H 0.080 0.920 18 C 0.077 3.923 19 N -0.894 5.894 20 Si 0.876 3.124 21 H -0.275 1.275 22 H -0.291 1.291 23 H -0.260 1.260 24 C -0.173 4.173 25 C -0.189 4.189 26 C -0.086 4.086 27 C -0.146 4.146 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.266 0.734 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.603 -0.235 -8.225 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.143 3.857 4 C -0.274 4.274 5 C -0.068 4.068 6 C -0.190 4.190 7 C 0.040 3.960 8 N -0.163 5.163 9 H 0.273 0.727 10 C -0.073 4.073 11 C 0.367 3.633 12 O -0.391 6.391 13 O -0.247 6.247 14 C 0.036 3.964 15 C -0.007 4.007 16 C -0.522 4.522 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.531 5.531 20 Si 0.704 3.296 21 H -0.201 1.201 22 H -0.217 1.217 23 H -0.185 1.185 24 C -0.210 4.210 25 C -0.226 4.226 26 C -0.111 4.111 27 C -0.151 4.151 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -20.147 -0.739 -7.988 21.685 hybrid contribution 0.691 -0.538 0.114 0.883 sum -19.456 -1.277 -7.875 21.028 Atomic orbital electron populations 1.23088 0.78253 1.03976 1.01483 1.86057 1.21414 1.27047 1.87730 1.18439 0.89633 0.84348 0.93327 1.20838 0.99699 0.91834 1.14992 1.20557 0.93171 0.96945 0.96079 1.19967 0.93112 0.95669 1.10289 1.18053 0.82843 0.94592 1.00530 1.42067 1.05791 1.06730 1.61723 0.72692 1.19178 0.92120 0.82824 1.13132 1.19937 0.84191 0.85342 0.73785 1.90871 1.87300 1.14593 1.46378 1.86602 1.15395 1.40643 1.82078 1.23139 0.78731 0.94387 1.00191 1.19325 0.90579 0.97147 0.93666 1.20196 1.31492 1.04854 0.95645 0.90173 1.24999 0.95562 0.97141 0.94862 1.69882 1.39495 1.37851 1.05878 0.86903 0.80341 0.84978 0.77378 1.20131 1.21731 1.18472 1.22834 1.03318 0.97451 0.97435 1.23005 0.95822 0.98678 1.05112 1.20773 0.88336 0.99667 1.02352 1.17277 0.90473 0.93225 1.14091 0.92468 0.88232 0.92512 0.85376 0.85298 0.85558 0.90985 0.93281 0.92419 0.90763 0.89130 0.88689 0.90638 0.82337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.51 10.50 -18.99 -0.20 -3.71 16 3 C 0.19 2.31 6.73 -38.76 -0.26 2.05 16 4 C -0.25 -2.49 9.03 -39.45 -0.36 -2.85 16 5 C -0.05 -0.44 10.01 -39.57 -0.40 -0.84 16 6 C -0.17 -1.83 10.06 -39.41 -0.40 -2.23 16 7 C 0.15 2.05 7.25 -83.98 -0.61 1.44 16 8 N -0.56 -7.99 6.20 -7.37 -0.05 -8.04 16 9 H 0.43 5.61 8.96 -40.82 -0.37 5.24 16 10 C 0.04 0.58 6.99 -82.29 -0.58 0.00 16 11 C 0.52 10.12 7.93 34.16 0.27 10.39 16 12 O -0.50 -10.61 16.56 -19.34 -0.32 -10.93 16 13 O -0.33 -6.89 10.16 -40.96 -0.42 -7.30 16 14 C 0.11 2.37 5.01 37.16 0.19 2.55 16 15 C -0.01 -0.14 1.06 -155.66 -0.16 -0.31 16 16 C -0.48 -13.25 9.35 -34.44 -0.32 -13.57 16 17 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 18 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 19 N -0.89 -26.82 13.96 55.43 0.77 -26.04 16 20 Si 0.88 21.40 24.88 -169.99 -4.23 17.17 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 23 H -0.26 -6.06 5.74 56.52 0.32 -5.73 16 24 C -0.17 -3.40 9.96 -26.69 -0.27 -3.67 16 25 C -0.19 -3.87 7.62 -26.69 -0.20 -4.07 16 26 C -0.09 -1.31 10.52 -39.18 -0.41 -1.72 16 27 C -0.15 -2.07 6.11 -106.83 -0.65 -2.72 16 28 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.30 7.65 -51.93 -0.40 -0.09 16 31 H 0.13 0.91 6.27 -52.49 -0.33 0.59 16 32 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.07 1.68 6.47 -51.93 -0.34 1.35 16 35 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 39 H 0.09 2.02 7.29 -51.93 -0.38 1.64 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.16 2.29 8.06 -52.48 -0.42 1.86 16 LS Contribution 350.64 15.07 5.28 5.28 Total: -1.00 -32.36 350.64 -7.64 -39.99 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.22 Total: 5.87 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -3.26 Total: -12.28 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.73 Total: -34.08 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.94 Total: -21.95 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.23 Total: 17.17 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.36 -7.64 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923530780.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.774 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds