Wall clock time and date at job start Tue Mar 31 2020 10:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35762 * 116.99466 * 2 1 4 4 C 1.38079 * 120.20650 * 359.72973 * 3 2 1 5 5 C 1.38741 * 120.40225 * 179.75533 * 4 3 2 6 6 C 1.37769 * 120.73216 * 0.50030 * 5 4 3 7 7 C 1.39164 * 120.07930 * 359.75972 * 6 5 4 8 8 N 1.37520 * 133.05054 * 179.97438 * 7 6 5 9 9 H 0.97001 * 125.62745 * 0.02562 * 8 7 6 10 10 C 1.38336 * 108.74217 * 180.02562 * 8 7 6 11 11 C 1.46738 * 125.46673 * 180.02562 * 10 8 7 12 12 O 1.21595 * 120.00230 * 175.00334 * 11 10 8 13 13 O 1.34872 * 120.00208 * 355.00863 * 11 10 8 14 14 C 1.45201 * 117.00168 * 185.18376 * 13 11 10 15 15 C 1.53003 * 109.46952 * 184.21735 * 14 13 11 16 16 C 1.50699 * 115.55086 * 64.76792 * 15 14 13 17 17 H 1.08001 * 119.99959 * 266.67896 * 16 15 14 18 18 C 1.37877 * 119.99963 * 86.67107 * 16 15 14 19 19 N 1.31520 * 119.99865 * 178.71195 * 18 16 15 20 20 Si 1.86802 * 120.00081 * 358.71735 * 18 16 15 21 21 H 1.48494 * 109.47080 * 90.86507 * 20 18 16 22 22 H 1.48503 * 109.46969 * 210.86714 * 20 18 16 23 23 H 1.48504 * 109.46995 * 330.86533 * 20 18 16 24 24 C 1.52999 * 117.50259 * 279.09712 * 15 14 13 25 25 C 1.53000 * 117.49983 * 210.43663 * 15 14 13 26 26 C 1.36023 * 109.06372 * 0.02562 * 10 8 7 27 27 C 1.40580 * 120.19958 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47087 * 299.99508 * 1 2 3 29 29 H 1.09005 * 109.46993 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47487 * 59.99609 * 1 2 3 31 31 H 1.07995 * 119.79654 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.63354 * 180.28455 * 5 4 3 33 33 H 1.07995 * 119.96584 * 179.78380 * 6 5 4 34 34 H 1.08993 * 109.46865 * 304.21619 * 14 13 11 35 35 H 1.08999 * 109.47201 * 64.22099 * 14 13 11 36 36 H 0.97002 * 119.99230 * 180.02562 * 19 18 16 37 37 H 1.09007 * 117.49772 * 0.02562 * 24 15 14 38 38 H 1.08999 * 117.50156 * 145.01980 * 24 15 14 39 39 H 1.08995 * 117.50042 * 214.98449 * 25 15 14 40 40 H 1.08999 * 117.49475 * 359.97438 * 25 15 14 41 41 H 1.08004 * 126.11948 * 179.97438 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2973 2.3704 -0.0056 5 6 1.9228 3.6088 -0.0005 6 6 3.2973 3.7033 -0.0002 7 6 4.0757 2.5498 0.0002 8 7 5.4339 2.3338 0.0001 9 1 6.1157 3.0237 0.0002 10 6 5.6671 0.9702 -0.0001 11 6 6.9886 0.3325 0.0004 12 8 7.0803 -0.8766 0.0919 13 8 8.1018 1.0873 -0.1006 14 6 9.3674 0.3841 -0.2103 15 6 10.5149 1.3962 -0.2087 16 6 10.6847 2.1843 1.0646 17 1 10.2098 3.1485 1.1702 18 6 11.4461 1.6743 2.0946 19 7 11.6152 2.3731 3.1959 20 14 12.2378 -0.0093 1.9261 21 1 13.5982 0.1390 1.3496 22 1 12.3337 -0.6473 3.2636 23 1 11.4107 -0.8578 1.0310 24 6 10.8330 2.1057 -1.5263 25 6 11.7802 1.0308 -0.9874 26 6 4.4748 0.3156 -0.0007 27 6 3.4489 1.2883 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 0.2189 2.3138 -0.0105 32 1 1.3256 4.5087 -0.0004 33 1 3.7712 4.6737 0.0003 34 1 9.4803 -0.2945 0.6351 35 1 9.3871 -0.1859 -1.1391 36 1 12.1512 2.0144 3.9204 37 1 10.2245 1.8518 -2.3944 38 1 11.1654 3.1424 -1.4723 39 1 12.7354 1.3607 -0.5789 40 1 11.7953 0.0693 -1.5004 41 1 4.3366 -0.7556 -0.0013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923530780.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:10 Heat of formation + Delta-G solvation = -53.274242 kcal Electronic energy + Delta-G solvation = -25270.556152 eV Core-core repulsion = 21502.804672 eV Total energy + Delta-G solvation = -3767.751481 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.73742 -41.26012 -40.04306 -38.84391 -37.16341 -36.98887 -34.29121 -32.92815 -30.97738 -29.76740 -29.10647 -28.11113 -27.41172 -25.17928 -23.38220 -22.94399 -22.54443 -21.36533 -21.07088 -19.78361 -18.98968 -18.67778 -17.69746 -17.58612 -16.96690 -16.89541 -16.69566 -16.59720 -16.25973 -15.66092 -15.46302 -14.91126 -14.84021 -14.67772 -14.50190 -14.10245 -13.98853 -13.89931 -13.27782 -13.10588 -12.87430 -12.78669 -12.46618 -12.33860 -12.11409 -11.99788 -11.98048 -11.83696 -11.78688 -11.55751 -10.96909 -10.69986 -10.63010 -10.42884 -9.44809 -8.51763 -8.34321 -6.41815 -0.41128 0.54466 0.84008 1.30374 1.34881 1.41930 1.47038 1.85961 1.97997 2.31587 2.36944 2.80847 2.99025 3.11569 3.60582 3.75355 3.93688 4.00169 4.00510 4.17391 4.19431 4.26403 4.33878 4.35946 4.46001 4.47625 4.51511 4.55921 4.70461 4.80447 4.80968 4.86594 4.98584 5.14858 5.29316 5.36696 5.38170 5.42951 5.46130 5.55328 5.62196 5.81136 6.24949 6.34913 6.46661 6.57308 6.66874 7.27478 8.81157 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.021746 B = 0.002992 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.267981 B = 9355.233231 C = 9639.800562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.178 3.822 4 C -0.247 4.247 5 C -0.031 4.031 6 C -0.184 4.184 7 C 0.149 3.851 8 N -0.562 5.562 9 H 0.434 0.566 10 C 0.005 3.995 11 C 0.525 3.475 12 O -0.528 6.528 13 O -0.342 6.342 14 C 0.112 3.888 15 C -0.040 4.040 16 C -0.483 4.483 17 H 0.035 0.965 18 C 0.021 3.979 19 N -0.946 5.946 20 Si 0.932 3.068 21 H -0.257 1.257 22 H -0.298 1.298 23 H -0.241 1.241 24 C -0.152 4.152 25 C -0.178 4.178 26 C -0.078 4.078 27 C -0.175 4.175 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.169 0.831 33 H 0.146 0.854 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.266 0.734 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.857 -0.385 -10.139 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.131 3.869 4 C -0.266 4.266 5 C -0.051 4.051 6 C -0.205 4.205 7 C 0.036 3.964 8 N -0.166 5.166 9 H 0.275 0.725 10 C -0.102 4.102 11 C 0.371 3.629 12 O -0.419 6.419 13 O -0.258 6.258 14 C 0.039 3.961 15 C -0.040 4.040 16 C -0.520 4.520 17 H 0.054 0.946 18 C -0.177 4.177 19 N -0.585 5.585 20 Si 0.756 3.244 21 H -0.182 1.182 22 H -0.225 1.225 23 H -0.164 1.164 24 C -0.189 4.189 25 C -0.215 4.215 26 C -0.105 4.105 27 C -0.180 4.180 28 H 0.089 0.911 29 H 0.133 0.867 30 H 0.091 0.909 31 H 0.179 0.821 32 H 0.186 0.814 33 H 0.163 0.837 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.126 0.874 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -22.419 -0.880 -9.935 24.538 hybrid contribution 1.096 -0.358 0.703 1.351 sum -21.323 -1.239 -9.232 23.269 Atomic orbital electron populations 1.23424 0.75814 1.05649 1.02839 1.86030 1.23978 1.26993 1.87576 1.18626 0.89117 0.85620 0.93543 1.21274 1.01280 0.91041 1.13033 1.21090 0.92736 0.98277 0.92949 1.20337 0.93845 0.95588 1.10686 1.18453 0.82310 0.95458 1.00175 1.42000 1.06489 1.05866 1.62285 0.72500 1.18878 0.90842 0.84041 1.16476 1.20317 0.84576 0.85154 0.72852 1.90834 1.87642 1.15514 1.47948 1.86605 1.15657 1.41052 1.82467 1.22955 0.78862 0.93779 1.00537 1.19203 0.92862 0.98904 0.93081 1.20352 1.30141 1.03621 0.97931 0.94631 1.25827 0.96447 1.00968 0.94422 1.70030 1.41332 1.40052 1.07082 0.85992 0.80399 0.80531 0.77439 1.18170 1.22513 1.16385 1.22885 1.02503 0.97183 0.96356 1.23088 0.94193 1.00389 1.03821 1.20913 0.88603 0.99996 1.00975 1.17537 0.91608 0.93119 1.15717 0.91139 0.86661 0.90930 0.82150 0.81398 0.83663 0.93243 0.90558 0.92478 0.87649 0.89627 0.89598 0.87439 0.82399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.33 -7.06 10.50 -90.88 -0.95 -8.01 16 3 C 0.18 4.06 6.73 22.80 0.15 4.22 16 4 C -0.25 -3.97 9.03 22.35 0.20 -3.77 16 5 C -0.03 -0.46 10.01 22.28 0.22 -0.23 16 6 C -0.18 -3.56 10.06 22.38 0.23 -3.34 16 7 C 0.15 3.91 7.25 39.12 0.28 4.20 16 8 N -0.56 -16.53 6.20 -177.24 -1.10 -17.63 16 9 H 0.43 11.81 8.96 -92.71 -0.83 10.98 16 10 C 0.00 0.16 6.99 39.82 0.28 0.44 16 11 C 0.52 21.00 7.93 70.04 0.56 21.55 16 12 O -0.53 -22.97 16.56 19.52 0.32 -22.65 16 13 O -0.34 -14.55 10.16 -57.85 -0.59 -15.13 16 14 C 0.11 4.83 5.01 71.98 0.36 5.19 16 15 C -0.04 -1.79 1.06 -52.93 -0.06 -1.84 16 16 C -0.48 -27.31 9.35 25.60 0.24 -27.07 16 17 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 18 C 0.02 1.23 5.47 84.65 0.46 1.69 16 19 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 20 Si 0.93 44.31 24.88 68.60 1.71 46.02 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 23 H -0.24 -10.59 5.74 99.48 0.57 -10.02 16 24 C -0.15 -5.68 9.96 30.62 0.30 -5.37 16 25 C -0.18 -6.82 7.62 30.62 0.23 -6.59 16 26 C -0.08 -2.48 10.52 22.53 0.24 -2.24 16 27 C -0.18 -4.93 6.11 -21.29 -0.13 -5.06 16 28 H 0.07 0.55 7.67 -2.39 -0.02 0.53 16 29 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.07 0.52 7.65 -2.39 -0.02 0.51 16 31 H 0.16 1.50 6.27 -2.91 -0.02 1.48 16 32 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.05 2.32 6.47 -2.39 -0.02 2.31 16 35 H 0.08 2.85 8.09 -2.39 -0.02 2.83 16 36 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 37 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 38 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.09 3.46 7.29 -2.39 -0.02 3.44 16 40 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 41 H 0.16 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -74.03 350.64 4.48 -69.55 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.10 Total: 23.65 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 4.69 Total: -16.95 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -0.80 Total: -76.47 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -1.22 Total: -45.80 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.71 Total: 46.02 kcal Total: -74.03 4.48 -69.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923530780.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.276 kcal (2) G-P(sol) polarization free energy of solvation -74.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds