Wall clock time and date at job start Tue Mar 31 2020 10:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99714 * 2 1 4 4 C 1.50706 * 109.47097 * 180.02562 * 3 2 1 5 5 C 1.35160 * 125.61105 * 94.99672 * 4 3 2 6 6 C 1.40334 * 107.12295 * 180.02562 * 5 4 3 7 7 C 1.36659 * 106.70428 * 0.02562 * 6 5 4 8 8 C 1.46518 * 125.99376 * 179.97438 * 7 6 5 9 9 O 1.21743 * 120.00087 * 2.29944 * 8 7 6 10 10 N 1.34781 * 120.00044 * 182.30405 * 8 7 6 11 11 C 1.36850 * 119.99866 * 174.90093 * 10 8 7 12 12 H 1.08003 * 119.99812 * 218.04980 * 11 10 8 13 13 C 1.39030 * 120.00132 * 38.05433 * 11 10 8 14 14 N 1.31387 * 119.99738 * 29.94128 * 13 11 10 15 15 Si 1.86794 * 119.99886 * 209.94108 * 13 11 10 16 16 H 1.48503 * 109.47167 * 65.00081 * 15 13 11 17 17 H 1.48507 * 109.46835 * 185.00103 * 15 13 11 18 18 H 1.48491 * 109.47248 * 304.99831 * 15 13 11 19 19 C 1.46494 * 119.99783 * 354.89759 * 10 8 7 20 20 C 1.50697 * 109.47258 * 268.12471 * 19 10 8 21 21 C 1.38238 * 120.00098 * 264.24899 * 20 19 10 22 22 C 1.38235 * 119.99843 * 180.32525 * 21 20 19 23 23 C 1.38235 * 120.00438 * 359.94947 * 22 21 20 24 24 C 1.38236 * 119.99433 * 0.02887 * 23 22 21 25 25 C 1.38234 * 119.99952 * 84.52805 * 20 19 10 26 26 O 1.33960 * 125.60493 * 275.33249 * 4 3 2 27 27 H 1.09002 * 109.46738 * 299.99699 * 1 2 3 28 28 H 1.08998 * 109.47305 * 59.99582 * 1 2 3 29 29 H 1.09000 * 109.46852 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47257 * 60.00430 * 3 2 1 31 31 H 1.09003 * 109.47302 * 300.00074 * 3 2 1 32 32 H 1.07998 * 126.43874 * 0.02770 * 5 4 3 33 33 H 1.08001 * 126.64482 * 179.97438 * 6 5 4 34 34 H 0.97001 * 119.99614 * 184.98291 * 14 13 11 35 35 H 1.09000 * 109.46976 * 148.12777 * 19 10 8 36 36 H 1.08999 * 109.47497 * 28.13212 * 19 10 8 37 37 H 1.07996 * 119.99866 * 0.27963 * 21 20 19 38 38 H 1.08000 * 119.99942 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.00644 * 180.02562 * 23 22 21 40 40 H 1.08002 * 119.99960 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.99790 * 359.71974 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.3042 1.2201 -1.0956 6 6 5.6280 1.0758 -0.6529 7 6 5.5767 0.9593 0.7077 8 6 6.7253 0.7885 1.6013 9 8 7.8545 0.7812 1.1465 10 7 6.5316 0.6393 2.9267 11 6 7.5940 0.3756 3.7480 12 1 7.4790 -0.3063 4.5777 13 6 8.8214 0.9855 3.5145 14 7 8.8685 2.1758 2.9602 15 14 10.4033 0.1127 3.9889 16 1 10.5569 -1.1148 3.1675 17 1 11.5577 1.0159 3.7501 18 1 10.3529 -0.2566 5.4263 19 6 5.1839 0.7595 3.4881 20 6 4.9405 2.1858 3.9094 21 6 5.1480 2.5635 5.2229 22 6 4.9183 3.8703 5.6108 23 6 4.4822 4.7996 4.6851 24 6 4.2752 4.4220 3.3715 25 6 4.5044 3.1151 2.9837 26 8 4.2825 1.0239 1.0835 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8465 -0.8900 32 1 3.9791 1.3362 -2.1189 33 1 6.5154 1.0590 -1.2684 34 1 9.7245 2.5705 2.7310 35 1 5.0912 0.1040 4.3541 36 1 4.4497 0.4727 2.7353 37 1 5.4887 1.8374 5.9462 38 1 5.0799 4.1653 6.6371 39 1 4.3032 5.8206 4.9880 40 1 3.9341 5.1479 2.6483 41 1 4.3423 2.8200 1.9575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189262560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:28 Heat of formation + Delta-G solvation = -6.507049 kcal Electronic energy + Delta-G solvation = -26885.641356 eV Core-core repulsion = 23119.917853 eV Total energy + Delta-G solvation = -3765.723503 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.21264 -38.87349 -37.94482 -37.68540 -34.57794 -32.63785 -32.26630 -30.75845 -30.33981 -30.28241 -27.35063 -25.96416 -25.55075 -24.16065 -22.02047 -21.59003 -21.12830 -20.48565 -19.61593 -17.52694 -16.89951 -16.53223 -16.15298 -15.87735 -15.71920 -15.21824 -14.93131 -14.56127 -14.47034 -13.85143 -13.79229 -13.29773 -13.02577 -12.87440 -12.70074 -12.56044 -12.34537 -12.23887 -11.91943 -11.83108 -11.55163 -11.46872 -10.98026 -10.88516 -10.76821 -10.47918 -10.30075 -10.18127 -9.86990 -9.48137 -8.98217 -8.45700 -8.30505 -8.09759 -8.00099 -7.33195 -6.23651 -3.88572 1.69104 1.96077 2.02139 2.78405 3.14482 3.33464 3.39365 3.44744 3.96926 4.19382 4.42438 4.58940 4.79518 4.90851 5.08355 5.17232 5.21579 5.23815 5.29960 5.40049 5.42917 5.44629 5.49401 5.58224 5.72808 5.76486 5.92010 6.08403 6.17712 6.20384 6.29048 6.34791 6.56946 6.65290 6.75314 6.89967 6.95967 7.04299 7.05417 7.32002 7.42575 7.55202 7.62237 8.11222 8.84318 9.00302 9.47586 10.07060 10.81443 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.012065 B = 0.005603 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.207666 B = 4996.393827 C = 6417.125360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.147 3.853 4 C -0.045 4.045 5 C -0.181 4.181 6 C -0.174 4.174 7 C -0.006 4.006 8 C 0.524 3.476 9 O -0.518 6.518 10 N -0.417 5.417 11 C -0.354 4.354 12 H 0.089 0.911 13 C 0.082 3.918 14 N -0.797 5.797 15 Si 0.904 3.096 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.123 3.877 20 C -0.071 4.071 21 C -0.093 4.093 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.128 4.128 25 C -0.107 4.107 26 O -0.151 6.151 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.268 0.732 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.417 1.769 -2.142 15.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.071 3.929 4 C -0.096 4.096 5 C -0.200 4.200 6 C -0.195 4.195 7 C -0.060 4.060 8 C 0.312 3.688 9 O -0.398 6.398 10 N -0.135 5.135 11 C -0.479 4.479 12 H 0.106 0.894 13 C -0.133 4.133 14 N -0.428 5.428 15 Si 0.730 3.270 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.202 1.202 19 C 0.001 3.999 20 C -0.072 4.072 21 C -0.112 4.112 22 C -0.145 4.145 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.125 4.125 26 O -0.048 6.048 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.163 0.837 33 H 0.170 0.830 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.712 1.750 -2.049 14.956 hybrid contribution 0.689 0.153 -0.108 0.714 sum -14.022 1.904 -2.157 14.315 Atomic orbital electron populations 1.22762 0.80757 1.02976 1.00042 1.88025 1.19699 1.27249 1.95435 1.20649 0.85021 0.85401 1.01866 1.22072 0.92506 1.09094 0.85889 1.21433 0.92806 1.07036 0.98769 1.21731 0.97829 1.06366 0.93615 1.23416 0.81541 1.05366 0.95640 1.16424 0.85178 0.85729 0.81478 1.90716 1.20968 1.53562 1.74533 1.43290 1.05473 1.60660 1.04120 1.19052 0.88704 1.26160 1.14003 0.89380 1.25106 0.99528 0.92904 0.95727 1.70011 1.27162 1.11292 1.34348 0.86405 0.81967 0.80222 0.78368 1.19836 1.21226 1.20181 1.20966 0.87403 0.92121 0.99447 1.20243 0.96596 0.96959 0.93407 1.20981 0.98213 0.96068 0.95930 1.20997 1.00735 0.93716 0.99033 1.20947 1.01485 0.98729 0.93775 1.20982 1.01708 0.96010 0.95926 1.21221 0.98785 0.93120 0.99376 1.84381 1.17218 1.69703 1.33470 0.93814 0.93998 0.89458 0.91486 0.90403 0.83662 0.83003 0.92168 0.90728 0.89129 0.86354 0.86908 0.87113 0.87099 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -5.05 10.69 -35.23 -0.38 -5.43 16 3 C 0.15 1.79 6.46 36.01 0.23 2.02 16 4 C -0.04 -0.73 6.83 -35.40 -0.24 -0.97 16 5 C -0.18 -2.93 10.77 -39.89 -0.43 -3.36 16 6 C -0.17 -3.45 10.63 -39.36 -0.42 -3.87 16 7 C -0.01 -0.14 6.29 -36.82 -0.23 -0.37 16 8 C 0.52 13.89 7.13 -12.92 -0.09 13.80 16 9 O -0.52 -15.50 14.21 5.15 0.07 -15.43 16 10 N -0.42 -10.62 2.52 -117.64 -0.30 -10.92 16 11 C -0.35 -9.57 9.25 -15.02 -0.14 -9.71 16 12 H 0.09 2.25 7.99 -52.48 -0.42 1.83 16 13 C 0.08 2.28 3.98 -17.45 -0.07 2.21 16 14 N -0.80 -23.50 11.91 55.50 0.66 -22.84 16 15 Si 0.90 21.70 29.65 -169.99 -5.04 16.66 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 C 0.12 2.59 5.34 -5.20 -0.03 2.57 16 20 C -0.07 -1.44 5.46 -104.62 -0.57 -2.01 16 21 C -0.09 -1.77 9.68 -39.58 -0.38 -2.15 16 22 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 23 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 24 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 25 C -0.11 -2.08 9.44 -39.58 -0.37 -2.45 16 26 O -0.15 -2.90 4.53 4.89 0.02 -2.88 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.15 2.94 8.06 -52.49 -0.42 2.51 16 34 H 0.27 7.62 8.32 -40.82 -0.34 7.29 16 35 H 0.07 1.44 7.96 -51.93 -0.41 1.02 16 36 H 0.09 1.82 4.55 -52.71 -0.24 1.58 16 37 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.12 2.33 4.81 -52.49 -0.25 2.08 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -33.68 349.89 -7.62 -41.30 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.11 Total: 4.89 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.82 Total: -10.63 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.36 Total: -33.76 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.28 Total: -23.73 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.04 Total: 16.66 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.68 -7.62 -41.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189262560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.792 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds