Wall clock time and date at job start Tue Mar 31 2020 10:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99714 * 2 1 4 4 C 1.50706 * 109.47097 * 180.02562 * 3 2 1 5 5 C 1.35160 * 125.61105 * 94.99672 * 4 3 2 6 6 C 1.40334 * 107.12295 * 180.02562 * 5 4 3 7 7 C 1.36659 * 106.70428 * 0.02562 * 6 5 4 8 8 C 1.46518 * 125.99376 * 179.97438 * 7 6 5 9 9 O 1.21743 * 120.00087 * 2.29944 * 8 7 6 10 10 N 1.34781 * 120.00044 * 182.30405 * 8 7 6 11 11 C 1.36850 * 119.99866 * 174.90093 * 10 8 7 12 12 H 1.08003 * 119.99812 * 218.04980 * 11 10 8 13 13 C 1.39030 * 120.00132 * 38.05433 * 11 10 8 14 14 N 1.31387 * 119.99738 * 29.94128 * 13 11 10 15 15 Si 1.86794 * 119.99886 * 209.94108 * 13 11 10 16 16 H 1.48503 * 109.47167 * 65.00081 * 15 13 11 17 17 H 1.48507 * 109.46835 * 185.00103 * 15 13 11 18 18 H 1.48491 * 109.47248 * 304.99831 * 15 13 11 19 19 C 1.46494 * 119.99783 * 354.89759 * 10 8 7 20 20 C 1.50697 * 109.47258 * 268.12471 * 19 10 8 21 21 C 1.38238 * 120.00098 * 264.24899 * 20 19 10 22 22 C 1.38235 * 119.99843 * 180.32525 * 21 20 19 23 23 C 1.38235 * 120.00438 * 359.94947 * 22 21 20 24 24 C 1.38236 * 119.99433 * 0.02887 * 23 22 21 25 25 C 1.38234 * 119.99952 * 84.52805 * 20 19 10 26 26 O 1.33960 * 125.60493 * 275.33249 * 4 3 2 27 27 H 1.09002 * 109.46738 * 299.99699 * 1 2 3 28 28 H 1.08998 * 109.47305 * 59.99582 * 1 2 3 29 29 H 1.09000 * 109.46852 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47257 * 60.00430 * 3 2 1 31 31 H 1.09003 * 109.47302 * 300.00074 * 3 2 1 32 32 H 1.07998 * 126.43874 * 0.02770 * 5 4 3 33 33 H 1.08001 * 126.64482 * 179.97438 * 6 5 4 34 34 H 0.97001 * 119.99614 * 184.98291 * 14 13 11 35 35 H 1.09000 * 109.46976 * 148.12777 * 19 10 8 36 36 H 1.08999 * 109.47497 * 28.13212 * 19 10 8 37 37 H 1.07996 * 119.99866 * 0.27963 * 21 20 19 38 38 H 1.08000 * 119.99942 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.00644 * 180.02562 * 23 22 21 40 40 H 1.08002 * 119.99960 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.99790 * 359.71974 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.3042 1.2201 -1.0956 6 6 5.6280 1.0758 -0.6529 7 6 5.5767 0.9593 0.7077 8 6 6.7253 0.7885 1.6013 9 8 7.8545 0.7812 1.1465 10 7 6.5316 0.6393 2.9267 11 6 7.5940 0.3756 3.7480 12 1 7.4790 -0.3063 4.5777 13 6 8.8214 0.9855 3.5145 14 7 8.8685 2.1758 2.9602 15 14 10.4033 0.1127 3.9889 16 1 10.5569 -1.1148 3.1675 17 1 11.5577 1.0159 3.7501 18 1 10.3529 -0.2566 5.4263 19 6 5.1839 0.7595 3.4881 20 6 4.9405 2.1858 3.9094 21 6 5.1480 2.5635 5.2229 22 6 4.9183 3.8703 5.6108 23 6 4.4822 4.7996 4.6851 24 6 4.2752 4.4220 3.3715 25 6 4.5044 3.1151 2.9837 26 8 4.2825 1.0239 1.0835 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8465 -0.8900 32 1 3.9791 1.3362 -2.1189 33 1 6.5154 1.0590 -1.2684 34 1 9.7245 2.5705 2.7310 35 1 5.0912 0.1040 4.3541 36 1 4.4497 0.4727 2.7353 37 1 5.4887 1.8374 5.9462 38 1 5.0799 4.1653 6.6371 39 1 4.3032 5.8206 4.9880 40 1 3.9341 5.1479 2.6483 41 1 4.3423 2.8200 1.9575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189262560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:27 Heat of formation + Delta-G solvation = -26.963493 kcal Electronic energy + Delta-G solvation = -26886.528414 eV Core-core repulsion = 23119.917853 eV Total energy + Delta-G solvation = -3766.610561 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.69347 -40.48408 -39.49938 -38.74941 -36.44333 -34.33002 -33.97642 -32.13165 -31.89695 -31.67312 -28.61102 -27.48792 -26.80829 -25.72901 -23.47184 -23.15992 -22.55963 -21.92635 -21.29455 -19.34664 -18.25460 -18.00051 -17.35120 -17.24212 -16.84935 -16.62093 -16.54319 -16.13923 -16.04598 -15.62931 -15.12166 -14.92738 -14.57123 -14.27615 -14.05270 -13.98421 -13.82093 -13.52455 -13.49282 -13.28980 -12.96627 -12.82237 -12.66515 -12.50109 -12.30461 -12.18320 -11.92342 -11.69678 -10.99659 -10.92178 -10.69693 -10.44382 -9.70014 -9.58558 -9.51669 -9.33987 -8.30692 -5.98901 0.18110 0.55219 0.62199 1.36209 1.38084 1.47823 1.51323 1.73596 2.32436 2.62116 2.88688 2.99158 3.13057 3.32903 3.77993 3.95989 4.02292 4.05813 4.10012 4.23026 4.27178 4.34924 4.36232 4.41891 4.57632 4.61160 4.62999 4.73080 4.79749 4.84041 4.92124 4.95258 5.13259 5.23925 5.25879 5.41881 5.49821 5.66202 5.67697 5.86666 5.95097 6.12555 6.15709 6.24686 6.83900 7.02464 7.47411 8.09576 8.74682 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.012065 B = 0.005603 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.207666 B = 4996.393827 C = 6417.125360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.146 3.854 4 C -0.029 4.029 5 C -0.180 4.180 6 C -0.167 4.167 7 C -0.051 4.051 8 C 0.516 3.484 9 O -0.571 6.571 10 N -0.429 5.429 11 C -0.372 4.372 12 H 0.095 0.905 13 C 0.038 3.962 14 N -0.838 5.838 15 Si 0.961 3.039 16 H -0.284 1.284 17 H -0.287 1.287 18 H -0.252 1.252 19 C 0.125 3.875 20 C -0.095 4.095 21 C -0.113 4.113 22 C -0.129 4.129 23 C -0.127 4.127 24 C -0.133 4.133 25 C -0.125 4.125 26 O -0.154 6.154 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.187 0.813 33 H 0.148 0.852 34 H 0.261 0.739 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.138 0.862 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.159 2.882 -2.305 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C 0.071 3.929 4 C -0.080 4.080 5 C -0.199 4.199 6 C -0.188 4.188 7 C -0.103 4.103 8 C 0.305 3.695 9 O -0.454 6.454 10 N -0.146 5.146 11 C -0.498 4.498 12 H 0.112 0.888 13 C -0.172 4.172 14 N -0.471 5.471 15 Si 0.786 3.214 16 H -0.210 1.210 17 H -0.213 1.213 18 H -0.176 1.176 19 C 0.004 3.996 20 C -0.096 4.096 21 C -0.131 4.131 22 C -0.147 4.147 23 C -0.145 4.145 24 C -0.151 4.151 25 C -0.144 4.144 26 O -0.052 6.052 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.135 0.865 32 H 0.204 0.796 33 H 0.166 0.834 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.137 0.863 38 H 0.160 0.840 39 H 0.166 0.834 40 H 0.156 0.844 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.497 2.851 -2.166 17.860 hybrid contribution 1.262 -0.180 -0.141 1.283 sum -16.235 2.671 -2.307 16.614 Atomic orbital electron populations 1.22999 0.78304 1.04128 1.01611 1.87960 1.22316 1.27532 1.95783 1.20926 0.81886 0.85763 1.04354 1.23094 0.94484 1.05423 0.84967 1.21794 0.90657 1.06701 1.00764 1.21995 0.99638 1.04368 0.92811 1.22602 0.81975 1.10207 0.95543 1.16935 0.85906 0.84507 0.82125 1.90647 1.23337 1.55737 1.75718 1.43451 1.06658 1.60430 1.04054 1.19360 0.89808 1.26270 1.14389 0.88777 1.25911 1.02346 0.93218 0.95686 1.70107 1.27111 1.12877 1.37035 0.85516 0.78404 0.78425 0.79090 1.21016 1.21254 1.17613 1.21049 0.85373 0.93515 0.99709 1.20237 0.98367 0.96535 0.94435 1.21170 0.98913 0.97463 0.95587 1.21380 0.99664 0.92830 1.00779 1.21406 0.99672 1.00302 0.93082 1.21351 1.00989 0.95506 0.97216 1.21314 0.99791 0.94257 0.98992 1.84321 1.16225 1.69818 1.34788 0.92822 0.91788 0.88663 0.90329 0.86535 0.79576 0.83428 0.92911 0.89916 0.88525 0.86339 0.84005 0.83412 0.84404 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -9.69 10.69 -148.98 -1.59 -11.28 16 3 C 0.15 3.06 6.46 71.24 0.46 3.52 16 4 C -0.03 -0.88 6.83 24.98 0.17 -0.71 16 5 C -0.18 -5.44 10.77 22.07 0.24 -5.20 16 6 C -0.17 -6.65 10.63 22.41 0.24 -6.41 16 7 C -0.05 -2.32 6.29 24.06 0.15 -2.17 16 8 C 0.52 28.73 7.13 86.40 0.62 29.35 16 9 O -0.57 -36.17 14.21 -4.49 -0.06 -36.24 16 10 N -0.43 -22.80 2.52 -644.31 -1.62 -24.42 16 11 C -0.37 -20.94 9.25 84.10 0.78 -20.16 16 12 H 0.09 4.98 7.99 -2.91 -0.02 4.96 16 13 C 0.04 2.22 3.98 84.95 0.34 2.56 16 14 N -0.84 -51.71 11.91 21.68 0.26 -51.45 16 15 Si 0.96 46.03 29.65 68.60 2.03 48.07 16 16 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 17 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 18 H -0.25 -10.94 7.11 99.48 0.71 -10.23 16 19 C 0.13 5.46 5.34 85.63 0.46 5.91 16 20 C -0.09 -3.91 5.46 -19.87 -0.11 -4.02 16 21 C -0.11 -4.28 9.68 22.27 0.22 -4.06 16 22 C -0.13 -4.12 10.05 22.27 0.22 -3.90 16 23 C -0.13 -3.78 10.05 22.27 0.22 -3.55 16 24 C -0.13 -4.34 10.05 22.27 0.22 -4.12 16 25 C -0.13 -4.86 9.44 22.27 0.21 -4.65 16 26 O -0.15 -5.94 4.53 -5.41 -0.02 -5.96 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.19 3.98 8.06 -2.91 -0.02 3.96 16 33 H 0.15 5.88 8.06 -2.91 -0.02 5.86 16 34 H 0.26 15.64 8.32 -92.71 -0.77 14.86 16 35 H 0.08 3.31 7.96 -2.39 -0.02 3.30 16 36 H 0.10 4.02 4.55 -14.76 -0.07 3.95 16 37 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 38 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 39 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 40 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 41 H 0.11 4.41 4.81 -2.91 -0.01 4.39 16 Total: -1.00 -77.90 349.89 5.66 -72.24 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.99 Total: 25.06 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 5.68 Total: -16.01 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -1.37 Total: -75.87 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -1.68 Total: -53.48 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.07 kcal Total: -77.90 5.66 -72.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189262560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.280 kcal (2) G-P(sol) polarization free energy of solvation -77.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds