Wall clock time and date at job start Tue Mar 31 2020 10:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.36002 * 116.99777 * 2 1 4 4 C 1.38616 * 120.05964 * 359.97438 * 3 2 1 5 5 C 1.38259 * 120.10862 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.21749 * 359.97438 * 5 4 3 7 7 C 1.38619 * 120.10807 * 359.97438 * 6 5 4 8 8 O 1.36011 * 120.05213 * 179.97438 * 7 6 5 9 9 C 1.42897 * 117.00059 * 5.18590 * 8 7 6 10 10 C 1.39162 * 119.89189 * 0.02562 * 7 6 5 11 11 N 1.40206 * 120.10869 * 179.97438 * 10 7 6 12 12 C 1.39720 * 120.00390 * 276.57936 * 11 10 7 13 13 C 1.38803 * 120.10511 * 5.67869 * 12 11 10 14 14 C 1.38180 * 119.98904 * 179.69970 * 13 12 11 15 15 C 1.38360 * 120.20487 * 0.58175 * 14 13 12 16 16 C 1.38180 * 120.21959 * 359.71784 * 15 14 13 17 17 C 1.38721 * 120.00681 * 359.97438 * 16 15 14 18 18 O 1.35781 * 120.10174 * 179.97438 * 17 16 15 19 19 C 1.34805 * 117.00136 * 1.87421 * 18 17 16 20 20 H 1.08001 * 119.99720 * 354.74979 * 19 18 17 21 21 C 1.38618 * 120.00172 * 174.74521 * 19 18 17 22 22 N 1.31580 * 119.99974 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99757 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47090 * 90.00073 * 23 21 19 25 25 H 1.48504 * 109.47016 * 209.99613 * 23 21 19 26 26 H 1.48495 * 109.47409 * 329.99597 * 23 21 19 27 27 H 1.08999 * 109.46919 * 59.99947 * 1 2 3 28 28 H 1.08995 * 109.47064 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47005 * 300.00609 * 1 2 3 30 30 H 1.08000 * 119.94415 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.88899 * 179.70449 * 5 4 3 32 32 H 1.08000 * 119.94387 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.47151 * 300.00080 * 9 8 7 34 34 H 1.09000 * 109.47293 * 59.99931 * 9 8 7 35 35 H 1.08994 * 109.47265 * 179.97438 * 9 8 7 36 36 H 0.97003 * 119.99927 * 96.57652 * 11 10 7 37 37 H 1.08004 * 120.00713 * 0.02562 * 13 12 11 38 38 H 1.08000 * 119.89288 * 180.27719 * 14 13 12 39 39 H 1.08001 * 119.88842 * 179.74399 * 15 14 13 40 40 H 1.07999 * 119.99325 * 180.02562 * 16 15 14 41 41 H 0.97002 * 119.99949 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2927 2.3751 -0.0005 5 6 1.9192 3.6076 0.0000 6 6 3.2996 3.6864 0.0016 7 6 4.0622 2.5288 0.0032 8 8 5.4200 2.6077 0.0043 9 6 5.9940 3.9113 0.1187 10 6 3.4362 1.2859 0.0027 11 7 4.2031 0.1122 0.0038 12 6 4.7027 -0.3971 -1.1976 13 6 4.5425 0.3173 -2.3768 14 6 5.0430 -0.1856 -3.5625 15 6 5.6940 -1.4064 -3.5810 16 6 5.8528 -2.1277 -2.4132 17 6 5.3595 -1.6283 -1.2168 18 8 5.5140 -2.3357 -0.0681 19 6 6.1907 -3.4986 -0.1519 20 1 6.5077 -3.8707 -1.1150 21 6 6.4796 -4.2168 0.9980 22 7 7.1396 -5.3521 0.9161 23 14 5.9307 -3.5734 2.6636 24 1 4.5766 -4.0975 2.9749 25 1 6.8871 -4.0222 3.7072 26 1 5.8922 -2.0893 2.6328 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2141 2.3186 -0.0014 31 1 1.3285 4.5116 -0.0053 32 1 3.7844 4.6514 0.0016 33 1 5.6655 4.5277 -0.7181 34 1 5.6734 4.3686 1.0547 35 1 7.0810 3.8319 0.1072 36 1 4.3869 -0.3463 0.8386 37 1 4.0313 1.2687 -2.3667 38 1 4.9214 0.3737 -4.4783 39 1 6.0795 -1.7966 -4.5114 40 1 6.3619 -3.0800 -2.4318 41 1 7.3415 -5.8549 1.7207 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212600543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:27 Heat of formation + Delta-G solvation = -27.409517 kcal Electronic energy + Delta-G solvation = -26472.036911 eV Core-core repulsion = 22705.407009 eV Total energy + Delta-G solvation = -3766.629902 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.65159 -39.03502 -38.92753 -36.67518 -36.25299 -34.73075 -32.22103 -30.23438 -29.59355 -29.09389 -27.82104 -27.59030 -26.47395 -25.07901 -22.73451 -21.79084 -21.11248 -20.89570 -18.61843 -17.72741 -17.46716 -16.74423 -16.68804 -16.37629 -15.98281 -15.48372 -15.46580 -14.78319 -14.73810 -14.42479 -13.80685 -13.70478 -13.50791 -13.31814 -13.14627 -12.76300 -12.50601 -12.21707 -12.13935 -12.05556 -11.66102 -11.54774 -11.37297 -11.08020 -10.87158 -10.75313 -10.71939 -10.49916 -10.13358 -9.62339 -9.28609 -8.73113 -8.27009 -8.17451 -7.55402 -6.48318 -6.27183 -3.90005 1.25952 1.38602 2.39095 2.51138 2.90873 3.29843 3.32401 3.46302 3.62749 3.69800 3.98407 4.34194 4.72169 4.72493 4.90551 4.97342 5.01825 5.07589 5.09786 5.10198 5.11252 5.22160 5.26004 5.43986 5.45023 5.52973 5.75813 5.96919 6.05581 6.13605 6.22321 6.34648 6.34924 6.39480 6.62077 6.81699 7.02594 7.26501 7.35551 7.36457 7.53621 7.74650 7.84508 8.12833 8.29228 8.43560 9.09380 9.74885 10.81448 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.011852 B = 0.004929 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.965072 B = 5679.485382 C = 6046.656856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.295 6.295 3 C 0.162 3.838 4 C -0.244 4.244 5 C -0.045 4.045 6 C -0.245 4.245 7 C 0.162 3.838 8 O -0.294 6.294 9 C 0.027 3.973 10 C 0.094 3.906 11 N -0.684 5.684 12 C 0.166 3.834 13 C -0.151 4.151 14 C -0.159 4.159 15 C -0.126 4.126 16 C -0.190 4.190 17 C 0.107 3.893 18 O -0.227 6.227 19 C -0.377 4.377 20 H 0.104 0.896 21 C 0.060 3.940 22 N -0.887 5.887 23 Si 0.903 3.097 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.261 1.261 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.100 0.900 36 H 0.409 0.591 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.133 0.867 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.824 19.089 -1.720 22.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.207 6.207 3 C 0.114 3.886 4 C -0.264 4.264 5 C -0.064 4.064 6 C -0.265 4.265 7 C 0.114 3.886 8 O -0.205 6.205 9 C -0.069 4.069 10 C -0.001 4.001 11 N -0.315 5.315 12 C 0.067 3.933 13 C -0.174 4.174 14 C -0.179 4.179 15 C -0.146 4.146 16 C -0.210 4.210 17 C 0.054 3.946 18 O -0.133 6.133 19 C -0.453 4.453 20 H 0.122 0.878 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.730 3.270 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.185 1.185 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.247 0.753 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.150 0.850 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.631 18.692 -1.433 21.552 hybrid contribution -0.354 0.364 0.954 1.081 sum -10.985 19.056 -0.479 22.001 Atomic orbital electron populations 1.23095 0.78643 1.04107 1.01006 1.86267 1.20890 1.25889 1.87638 1.19203 0.91089 0.84729 0.93617 1.21042 0.99967 0.91869 1.13508 1.20654 0.93605 0.96932 0.95187 1.21044 0.94713 0.97134 1.13566 1.19206 0.83013 0.92803 0.93592 1.86279 1.16657 1.30422 1.87172 1.23087 0.99492 0.83451 1.00826 1.15870 0.86564 0.85473 1.12207 1.41151 1.57699 1.25409 1.07196 1.17003 0.98730 0.91149 0.86380 1.20105 1.06199 0.99812 0.91309 1.20396 1.03646 0.97302 0.96515 1.20592 1.01524 0.95416 0.97067 1.21030 1.05988 1.02323 0.91702 1.18601 0.98414 0.90263 0.87281 1.83477 1.68048 1.33472 1.28337 1.20693 1.33159 0.94463 0.96951 0.87845 1.24396 0.95876 0.95142 0.98760 1.69662 1.38980 1.13889 1.30178 0.86215 0.78399 0.80298 0.82123 1.20114 1.21106 1.18529 0.92675 0.88127 0.92792 0.85271 0.85588 0.85278 0.92730 0.92810 0.88180 0.75299 0.87618 0.87809 0.87638 0.84989 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.30 -4.68 10.24 -19.75 -0.20 -4.88 16 3 C 0.16 2.47 6.70 -39.09 -0.26 2.21 16 4 C -0.24 -2.87 9.04 -39.43 -0.36 -3.23 16 5 C -0.05 -0.48 10.04 -39.57 -0.40 -0.87 16 6 C -0.25 -2.85 9.05 -39.43 -0.36 -3.21 16 7 C 0.16 2.45 6.19 -39.10 -0.24 2.20 16 8 O -0.29 -4.55 10.24 -19.77 -0.20 -4.76 16 9 C 0.03 0.27 9.83 101.05 0.99 1.26 16 10 C 0.09 1.62 4.59 -83.34 -0.38 1.24 16 11 N -0.68 -13.92 4.91 -8.05 -0.04 -13.96 16 12 C 0.17 3.64 6.64 -83.56 -0.56 3.08 16 13 C -0.15 -3.00 9.27 -39.39 -0.37 -3.36 16 14 C -0.16 -2.99 10.04 -39.56 -0.40 -3.38 16 15 C -0.13 -2.50 10.04 -39.56 -0.40 -2.90 16 16 C -0.19 -4.40 9.16 -39.42 -0.36 -4.76 16 17 C 0.11 2.63 6.67 -38.91 -0.26 2.37 16 18 O -0.23 -6.15 7.84 0.02 0.00 -6.15 16 19 C -0.38 -10.93 9.94 30.87 0.31 -10.63 16 20 H 0.10 3.08 5.43 -52.49 -0.29 2.80 16 21 C 0.06 1.73 5.49 -17.52 -0.10 1.63 16 22 N -0.89 -26.41 13.96 55.48 0.77 -25.64 16 23 Si 0.90 22.40 28.62 -169.99 -4.86 17.53 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.26 -6.43 7.11 56.52 0.40 -6.03 16 27 H 0.05 0.48 7.66 -51.93 -0.40 0.09 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 30 H 0.13 1.18 6.29 -52.49 -0.33 0.85 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.16 6.30 -52.49 -0.33 0.83 16 33 H 0.05 0.46 7.44 -51.93 -0.39 0.07 16 34 H 0.05 0.45 7.88 -51.93 -0.41 0.04 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.41 8.80 8.21 -40.82 -0.34 8.46 16 37 H 0.11 1.95 6.66 -52.48 -0.35 1.61 16 38 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 39 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.13 3.17 5.62 -52.49 -0.29 2.87 16 41 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -33.28 347.56 -6.20 -39.48 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -4.77 Total: 10.21 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -2.14 Total: -17.08 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.74 Total: -39.60 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.40 Total: -15.78 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.86 Total: 17.53 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.28 -6.20 -39.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.068 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds