Wall clock time and date at job start Tue Mar 31 2020 10:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36085 * 116.99926 * 2 1 4 4 C 1.38550 * 119.99392 * 0.02655 * 3 2 1 5 5 C 1.38197 * 120.06878 * 179.74281 * 4 3 2 6 6 C 1.38885 * 120.06771 * 0.50716 * 5 4 3 7 7 N 1.39908 * 120.00135 * 179.74200 * 6 5 4 8 8 C 1.39762 * 120.00225 * 354.99002 * 7 6 5 9 9 C 1.38788 * 120.10761 * 254.87211 * 8 7 6 10 10 C 1.38179 * 119.98467 * 180.27319 * 9 8 7 11 11 C 1.38352 * 120.21455 * 359.69682 * 10 9 8 12 12 C 1.38183 * 120.21019 * 0.02562 * 11 10 9 13 13 C 1.38723 * 120.00979 * 359.97438 * 12 11 10 14 14 O 1.35781 * 120.10264 * 180.02562 * 13 12 11 15 15 C 1.34802 * 117.00125 * 5.64971 * 14 13 12 16 16 H 1.08007 * 119.99841 * 354.93742 * 15 14 13 17 17 C 1.38617 * 119.99974 * 174.92927 * 15 14 13 18 18 N 1.31586 * 119.99853 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00284 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46900 * 60.00167 * 19 17 15 21 21 H 1.48498 * 109.47390 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47153 * 300.00580 * 19 17 15 23 23 C 1.38863 * 119.99820 * 359.47594 * 6 5 4 24 24 C 1.38507 * 119.92224 * 0.26644 * 23 6 5 25 25 O 1.35983 * 120.03500 * 179.97438 * 24 23 6 26 26 C 1.42898 * 117.00078 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.47411 * 59.99575 * 1 2 3 28 28 H 1.08998 * 109.46882 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46524 * 299.99473 * 1 2 3 30 30 H 1.07998 * 119.96754 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.95940 * 180.25729 * 5 4 3 32 32 H 0.97000 * 119.99483 * 174.99046 * 7 6 5 33 33 H 1.07991 * 120.00764 * 359.97438 * 9 8 7 34 34 H 1.08005 * 119.89414 * 179.71685 * 10 9 8 35 35 H 1.07996 * 119.89861 * 180.02562 * 11 10 9 36 36 H 1.07997 * 119.99499 * 180.02562 * 12 11 10 37 37 H 0.96998 * 119.99675 * 180.02562 * 18 17 15 38 38 H 1.07995 * 120.03943 * 180.25549 * 23 6 5 39 39 H 1.09003 * 109.47231 * 300.00205 * 26 25 24 40 40 H 1.09008 * 109.46889 * 59.99880 * 26 25 24 41 41 H 1.09004 * 109.47583 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2125 0.0000 4 6 1.2921 2.3744 0.0006 5 6 1.9179 3.6066 0.0059 6 6 3.3046 3.6828 0.0001 7 7 3.9367 4.9310 0.0001 8 6 3.1763 6.0993 -0.0998 9 6 3.1447 6.8097 -1.2917 10 6 2.3966 7.9676 -1.3859 11 6 1.6725 8.4192 -0.2970 12 6 1.6933 7.7156 0.8921 13 6 2.4413 6.5520 0.9967 14 8 2.4626 5.8587 2.1640 15 6 1.6449 6.2881 3.1459 16 1 1.0727 7.1947 3.0142 17 6 1.5383 5.5662 4.3244 18 7 2.2357 4.4619 4.4848 19 14 0.4046 6.1608 5.6847 20 1 -0.9890 6.2239 5.1754 21 1 0.4709 5.2193 6.8312 22 1 0.8309 7.5121 6.1291 23 6 4.0638 2.5201 -0.0001 24 6 3.4365 1.2852 -0.0001 25 8 4.1777 0.1452 -0.0008 26 6 5.5988 0.2953 -0.0009 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 0.2137 2.3172 0.0006 31 1 1.3278 4.5112 0.0106 32 1 4.9027 4.9854 0.0695 33 1 3.7086 6.4602 -2.1438 34 1 2.3767 8.5217 -2.3128 35 1 1.0892 9.3246 -0.3764 36 1 1.1264 8.0710 1.7398 37 1 2.1608 3.9566 5.3094 38 1 5.1422 2.5786 -0.0004 39 1 5.9060 0.8450 -0.8907 40 1 5.9062 0.8441 0.8893 41 1 6.0681 -0.6885 -0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212600775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:15 Heat of formation + Delta-G solvation = -31.785949 kcal Electronic energy + Delta-G solvation = -26258.285540 eV Core-core repulsion = 22491.465862 eV Total energy + Delta-G solvation = -3766.819678 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.12061 -39.26711 -37.97025 -37.11348 -36.28316 -33.92778 -32.30280 -30.04459 -29.68126 -29.00276 -27.63353 -26.94014 -26.11843 -25.34797 -22.36478 -21.65033 -21.47172 -20.57439 -18.18001 -18.00395 -17.41245 -16.99781 -16.37143 -15.64904 -15.34265 -15.27805 -14.87747 -14.70020 -14.62678 -14.34385 -14.05379 -13.88295 -13.42487 -13.29314 -12.79930 -12.52126 -12.36829 -12.14342 -11.74786 -11.70700 -11.41743 -11.26269 -11.14050 -10.98211 -10.88925 -10.83390 -10.72414 -10.57451 -10.49100 -9.51015 -9.02580 -8.86663 -8.20764 -7.92725 -7.29161 -6.50896 -6.45097 -4.06158 1.88678 1.98140 2.23607 2.29573 3.10234 3.11385 3.14357 3.62430 3.76520 3.92324 4.08062 4.38843 4.46650 5.04106 5.16751 5.22161 5.30880 5.38188 5.40916 5.48011 5.59462 5.60317 5.70179 5.72622 5.75579 5.87893 5.90324 5.95718 6.04009 6.19187 6.30522 6.60020 6.63412 6.87165 6.96007 7.00126 7.05891 7.10976 7.27833 7.29962 7.47663 7.61243 7.93260 7.98442 8.19237 8.37939 8.96934 9.65508 10.68823 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.005371 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.374553 B = 5211.671178 C = 6680.744653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.315 6.315 3 C 0.034 3.966 4 C -0.122 4.122 5 C -0.157 4.157 6 C 0.241 3.759 7 N -0.677 5.677 8 C 0.056 3.944 9 C -0.074 4.074 10 C -0.211 4.211 11 C -0.071 4.071 12 C -0.233 4.233 13 C 0.147 3.853 14 O -0.155 6.155 15 C -0.397 4.397 16 H 0.090 0.910 17 C 0.044 3.956 18 N -0.849 5.849 19 Si 0.937 3.063 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.247 4.247 24 C 0.137 3.863 25 O -0.310 6.310 26 C 0.029 3.971 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.397 0.603 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.270 0.730 38 H 0.128 0.872 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.990 -2.879 -9.234 9.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.230 6.230 3 C -0.012 4.012 4 C -0.142 4.142 5 C -0.179 4.179 6 C 0.139 3.861 7 N -0.303 5.303 8 C -0.038 4.038 9 C -0.094 4.094 10 C -0.231 4.231 11 C -0.089 4.089 12 C -0.253 4.253 13 C 0.090 3.910 14 O -0.057 6.057 15 C -0.473 4.473 16 H 0.108 0.892 17 C -0.162 4.162 18 N -0.483 5.483 19 Si 0.762 3.238 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.271 4.271 24 C 0.091 3.909 25 O -0.223 6.223 26 C -0.067 4.067 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.233 0.767 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.080 0.920 38 H 0.146 0.854 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.065 -3.556 -8.952 9.691 hybrid contribution -0.293 0.886 0.931 1.318 sum 0.772 -2.670 -8.021 8.489 Atomic orbital electron populations 1.22911 0.79762 1.02890 1.00948 1.86081 1.19995 1.26371 1.90561 1.17843 0.88791 0.84772 1.09804 1.20718 0.99202 0.91059 1.03177 1.20363 0.92704 0.97442 1.07395 1.17395 0.91495 0.84582 0.92653 1.41407 1.07243 1.00696 1.80911 1.16576 1.03984 0.91165 0.92031 1.20865 0.98362 0.95190 0.95021 1.20468 1.04363 0.99364 0.98913 1.20809 0.97226 0.98137 0.92758 1.21112 1.06739 0.98075 0.99394 1.19761 0.93650 0.90692 0.86917 1.84048 1.55278 1.49039 1.17296 1.21269 1.22709 1.09715 0.93621 0.89243 1.25255 0.97696 0.95323 0.97893 1.70059 1.37841 1.13900 1.26457 0.85847 0.79822 0.78607 0.79562 1.19485 1.20264 1.19539 1.20245 0.99291 0.90086 1.17460 1.17739 0.87835 0.85017 1.00316 1.86118 1.18205 1.28731 1.89294 1.22972 0.79433 1.03059 1.01190 0.93361 0.89084 0.93022 0.85461 0.85787 0.76695 0.86849 0.87380 0.87373 0.85358 0.91961 0.85449 0.93083 0.92766 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.32 -5.70 10.28 -34.62 -0.36 -6.06 16 3 C 0.03 0.65 6.70 -39.13 -0.26 0.39 16 4 C -0.12 -2.35 9.03 -39.48 -0.36 -2.70 16 5 C -0.16 -3.28 8.94 -39.36 -0.35 -3.63 16 6 C 0.24 4.84 6.50 -83.70 -0.54 4.29 16 7 N -0.68 -12.94 5.18 -8.26 -0.04 -12.98 16 8 C 0.06 1.13 4.89 -83.55 -0.41 0.72 16 9 C -0.07 -1.29 9.97 -39.40 -0.39 -1.68 16 10 C -0.21 -3.47 10.04 -39.56 -0.40 -3.87 16 11 C -0.07 -1.23 10.04 -39.56 -0.40 -1.63 16 12 C -0.23 -4.83 9.16 -39.42 -0.36 -5.19 16 13 C 0.15 3.37 5.48 -38.91 -0.21 3.15 16 14 O -0.15 -4.19 9.19 0.03 0.00 -4.19 16 15 C -0.40 -10.72 9.49 30.87 0.29 -10.43 16 16 H 0.09 2.24 5.21 -52.48 -0.27 1.96 16 17 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 18 N -0.85 -24.52 13.67 55.48 0.76 -23.76 16 19 Si 0.94 20.24 29.55 -169.99 -5.02 15.22 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 23 C -0.25 -4.53 8.88 -39.25 -0.35 -4.88 16 24 C 0.14 2.61 6.70 -39.14 -0.26 2.35 16 25 O -0.31 -5.42 10.28 -34.30 -0.35 -5.77 16 26 C 0.03 0.36 9.81 101.05 0.99 1.35 16 27 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.69 7.66 -51.93 -0.40 0.29 16 30 H 0.13 2.13 6.29 -52.49 -0.33 1.80 16 31 H 0.12 2.75 6.28 -52.48 -0.33 2.42 16 32 H 0.40 6.66 8.84 -40.82 -0.36 6.30 16 33 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 36 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 37 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.13 1.97 6.29 -52.49 -0.33 1.64 16 39 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 40 H 0.05 0.67 7.66 -51.92 -0.40 0.27 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -32.13 348.36 -6.64 -38.78 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -4.76 Total: 12.79 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -2.12 Total: -19.27 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.72 Total: -36.74 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.71 Total: -16.03 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.13 -6.64 -38.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.990 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds