Wall clock time and date at job start Tue Mar 31 2020 10:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36085 * 116.99926 * 2 1 4 4 C 1.38550 * 119.99392 * 0.02655 * 3 2 1 5 5 C 1.38197 * 120.06878 * 179.74281 * 4 3 2 6 6 C 1.38885 * 120.06771 * 0.50716 * 5 4 3 7 7 N 1.39908 * 120.00135 * 179.74200 * 6 5 4 8 8 C 1.39762 * 120.00225 * 354.99002 * 7 6 5 9 9 C 1.38788 * 120.10761 * 254.87211 * 8 7 6 10 10 C 1.38179 * 119.98467 * 180.27319 * 9 8 7 11 11 C 1.38352 * 120.21455 * 359.69682 * 10 9 8 12 12 C 1.38183 * 120.21019 * 0.02562 * 11 10 9 13 13 C 1.38723 * 120.00979 * 359.97438 * 12 11 10 14 14 O 1.35781 * 120.10264 * 180.02562 * 13 12 11 15 15 C 1.34802 * 117.00125 * 5.64971 * 14 13 12 16 16 H 1.08007 * 119.99841 * 354.93742 * 15 14 13 17 17 C 1.38617 * 119.99974 * 174.92927 * 15 14 13 18 18 N 1.31586 * 119.99853 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00284 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46900 * 60.00167 * 19 17 15 21 21 H 1.48498 * 109.47390 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47153 * 300.00580 * 19 17 15 23 23 C 1.38863 * 119.99820 * 359.47594 * 6 5 4 24 24 C 1.38507 * 119.92224 * 0.26644 * 23 6 5 25 25 O 1.35983 * 120.03500 * 179.97438 * 24 23 6 26 26 C 1.42898 * 117.00078 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.47411 * 59.99575 * 1 2 3 28 28 H 1.08998 * 109.46882 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46524 * 299.99473 * 1 2 3 30 30 H 1.07998 * 119.96754 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.95940 * 180.25729 * 5 4 3 32 32 H 0.97000 * 119.99483 * 174.99046 * 7 6 5 33 33 H 1.07991 * 120.00764 * 359.97438 * 9 8 7 34 34 H 1.08005 * 119.89414 * 179.71685 * 10 9 8 35 35 H 1.07996 * 119.89861 * 180.02562 * 11 10 9 36 36 H 1.07997 * 119.99499 * 180.02562 * 12 11 10 37 37 H 0.96998 * 119.99675 * 180.02562 * 18 17 15 38 38 H 1.07995 * 120.03943 * 180.25549 * 23 6 5 39 39 H 1.09003 * 109.47231 * 300.00205 * 26 25 24 40 40 H 1.09008 * 109.46889 * 59.99880 * 26 25 24 41 41 H 1.09004 * 109.47583 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2125 0.0000 4 6 1.2921 2.3744 0.0006 5 6 1.9179 3.6066 0.0059 6 6 3.3046 3.6828 0.0001 7 7 3.9367 4.9310 0.0001 8 6 3.1763 6.0993 -0.0998 9 6 3.1447 6.8097 -1.2917 10 6 2.3966 7.9676 -1.3859 11 6 1.6725 8.4192 -0.2970 12 6 1.6933 7.7156 0.8921 13 6 2.4413 6.5520 0.9967 14 8 2.4626 5.8587 2.1640 15 6 1.6449 6.2881 3.1459 16 1 1.0727 7.1947 3.0142 17 6 1.5383 5.5662 4.3244 18 7 2.2357 4.4619 4.4848 19 14 0.4046 6.1608 5.6847 20 1 -0.9890 6.2239 5.1754 21 1 0.4709 5.2193 6.8312 22 1 0.8309 7.5121 6.1291 23 6 4.0638 2.5201 -0.0001 24 6 3.4365 1.2852 -0.0001 25 8 4.1777 0.1452 -0.0008 26 6 5.5988 0.2953 -0.0009 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 0.2137 2.3172 0.0006 31 1 1.3278 4.5112 0.0106 32 1 4.9027 4.9854 0.0695 33 1 3.7086 6.4602 -2.1438 34 1 2.3767 8.5217 -2.3128 35 1 1.0892 9.3246 -0.3764 36 1 1.1264 8.0710 1.7398 37 1 2.1608 3.9566 5.3094 38 1 5.1422 2.5786 -0.0004 39 1 5.9060 0.8450 -0.8907 40 1 5.9062 0.8441 0.8893 41 1 6.0681 -0.6885 -0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212600775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:14 Heat of formation + Delta-G solvation = -51.968414 kcal Electronic energy + Delta-G solvation = -26259.160717 eV Core-core repulsion = 22491.465862 eV Total energy + Delta-G solvation = -3767.694856 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55664 -40.82627 -39.27512 -38.67630 -37.83532 -35.38909 -34.22804 -31.52478 -31.08845 -30.50540 -29.05501 -28.01653 -27.54439 -27.18291 -23.85746 -23.17861 -22.94637 -22.06045 -19.78262 -19.57796 -19.01170 -18.40752 -17.90372 -16.92808 -16.80889 -16.73204 -16.37697 -16.27073 -16.06082 -15.74315 -15.38446 -15.29612 -15.15658 -14.80537 -14.49752 -13.81677 -13.73752 -13.56913 -13.51111 -13.02096 -12.91293 -12.65717 -12.54077 -12.49092 -12.27215 -12.24066 -12.08418 -12.00482 -11.97058 -11.28213 -10.77530 -10.48527 -9.68910 -9.37125 -8.93219 -8.42333 -7.97663 -6.08661 0.40222 0.47512 0.72117 0.78104 1.33496 1.43355 1.48296 2.16843 2.35695 2.48380 2.65955 2.85728 2.89859 3.18541 3.52170 3.87036 4.15443 4.21280 4.26845 4.29316 4.35601 4.42352 4.43635 4.46460 4.52083 4.55785 4.63641 4.71451 4.72976 4.74479 4.82076 5.06837 5.13974 5.17654 5.33849 5.46287 5.58493 5.64742 5.66162 5.77791 6.01176 6.13766 6.18901 6.53701 6.74722 6.94646 7.02559 7.84240 8.78296 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.005371 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.374553 B = 5211.671178 C = 6680.744653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.331 6.331 3 C 0.022 3.978 4 C -0.127 4.127 5 C -0.181 4.181 6 C 0.226 3.774 7 N -0.677 5.677 8 C 0.053 3.947 9 C -0.073 4.073 10 C -0.185 4.185 11 C -0.069 4.069 12 C -0.247 4.247 13 C 0.111 3.889 14 O -0.203 6.203 15 C -0.412 4.412 16 H 0.097 0.903 17 C -0.016 4.016 18 N -0.908 5.908 19 Si 1.008 2.992 20 H -0.259 1.259 21 H -0.276 1.276 22 H -0.258 1.258 23 C -0.246 4.246 24 C 0.129 3.871 25 O -0.325 6.325 26 C 0.019 3.981 27 H 0.063 0.937 28 H 0.122 0.878 29 H 0.046 0.954 30 H 0.144 0.856 31 H 0.102 0.898 32 H 0.407 0.593 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.268 0.732 38 H 0.154 0.846 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 -1.868 -11.377 11.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.246 6.246 3 C -0.024 4.024 4 C -0.146 4.146 5 C -0.204 4.204 6 C 0.124 3.876 7 N -0.303 5.303 8 C -0.041 4.041 9 C -0.093 4.093 10 C -0.204 4.204 11 C -0.087 4.087 12 C -0.267 4.267 13 C 0.058 3.942 14 O -0.108 6.108 15 C -0.489 4.489 16 H 0.115 0.885 17 C -0.214 4.214 18 N -0.545 5.545 19 Si 0.828 3.172 20 H -0.184 1.184 21 H -0.201 1.201 22 H -0.183 1.183 23 C -0.269 4.269 24 C 0.083 3.917 25 O -0.239 6.239 26 C -0.076 4.076 27 H 0.081 0.919 28 H 0.140 0.860 29 H 0.065 0.935 30 H 0.161 0.839 31 H 0.120 0.880 32 H 0.244 0.756 33 H 0.162 0.838 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.136 0.864 37 H 0.077 0.923 38 H 0.171 0.829 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.034 -2.507 -11.153 11.478 hybrid contribution -0.220 0.640 1.245 1.417 sum 0.814 -1.867 -9.908 10.115 Atomic orbital electron populations 1.23223 0.77514 1.05142 1.01405 1.86055 1.22397 1.25727 1.90454 1.18065 0.89445 0.85235 1.09690 1.20881 1.00177 0.90669 1.02909 1.20319 0.93298 0.97215 1.09571 1.17574 0.91488 0.85446 0.93079 1.41404 1.07642 1.00318 1.80962 1.16951 1.03414 0.91501 0.92271 1.21263 0.98333 0.95075 0.94627 1.21050 1.01239 0.98180 0.99925 1.21216 0.97198 0.98831 0.91493 1.21270 1.06677 0.98010 1.00747 1.20354 0.95308 0.91594 0.86945 1.84024 1.57073 1.50994 1.18747 1.21691 1.22900 1.10045 0.94229 0.88523 1.26387 0.99331 0.95407 1.00308 1.70219 1.40958 1.16077 1.27263 0.84800 0.77883 0.78379 0.76149 1.18392 1.20072 1.18256 1.20478 1.00541 0.89317 1.16577 1.17984 0.88271 0.85761 0.99667 1.86100 1.20617 1.28202 1.88991 1.23329 0.76926 1.05340 1.01969 0.91891 0.85992 0.93523 0.83874 0.87966 0.75625 0.83819 0.82953 0.83737 0.86412 0.92323 0.82861 0.91331 0.92849 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.81 113.37 1.11 1.68 16 2 O -0.33 -11.97 10.28 -80.55 -0.83 -12.80 16 3 C 0.02 0.85 6.70 22.56 0.15 1.00 16 4 C -0.13 -5.05 9.03 22.33 0.20 -4.85 16 5 C -0.18 -7.92 8.94 22.41 0.20 -7.72 16 6 C 0.23 9.30 6.50 38.16 0.25 9.55 16 7 N -0.68 -26.11 5.18 -180.04 -0.93 -27.04 16 8 C 0.05 2.10 4.89 38.32 0.19 2.29 16 9 C -0.07 -2.33 9.97 22.39 0.22 -2.11 16 10 C -0.18 -5.25 10.04 22.28 0.22 -5.03 16 11 C -0.07 -2.20 10.04 22.28 0.22 -1.98 16 12 C -0.25 -10.24 9.16 22.37 0.21 -10.04 16 13 C 0.11 5.25 5.48 22.70 0.12 5.37 16 14 O -0.20 -11.63 9.19 -22.80 -0.21 -11.84 16 15 C -0.41 -23.41 9.49 67.91 0.64 -22.76 16 16 H 0.10 5.06 5.21 -2.91 -0.02 5.05 16 17 C -0.02 -0.88 5.49 84.82 0.47 -0.41 16 18 N -0.91 -55.50 13.67 21.61 0.30 -55.20 16 19 Si 1.01 42.95 29.55 68.60 2.03 44.98 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 23 C -0.25 -9.06 8.88 22.48 0.20 -8.86 16 24 C 0.13 4.97 6.70 22.55 0.15 5.12 16 25 O -0.33 -11.17 10.28 -79.39 -0.82 -11.99 16 26 C 0.02 0.43 9.81 113.37 1.11 1.55 16 27 H 0.06 1.44 7.66 -2.39 -0.02 1.42 16 28 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 1.25 7.66 -2.39 -0.02 1.23 16 30 H 0.14 4.95 6.29 -2.91 -0.02 4.94 16 31 H 0.10 4.82 6.28 -2.91 -0.02 4.80 16 32 H 0.41 13.63 8.84 -92.71 -0.82 12.81 16 33 H 0.14 3.71 8.06 -2.92 -0.02 3.69 16 34 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 36 H 0.12 5.02 5.64 -2.91 -0.02 5.01 16 37 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.15 4.62 6.29 -2.91 -0.02 4.60 16 39 H 0.07 1.35 7.66 -2.39 -0.02 1.34 16 40 H 0.05 1.25 7.66 -2.38 -0.02 1.24 16 41 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -75.04 348.36 5.47 -69.56 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: 0.26 Total: 41.53 kcal Atomic # 6 Polarization: -42.87 SS G_CDS: 5.67 Total: -37.20 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -0.64 Total: -82.24 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -1.85 Total: -36.63 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -75.04 5.47 -69.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.595 kcal (2) G-P(sol) polarization free energy of solvation -75.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds