Wall clock time and date at job start Tue Mar 31 2020 10:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35887 * 117.00342 * 2 1 4 4 C 1.38631 * 119.99267 * 179.97438 * 3 2 1 5 5 C 1.38883 * 119.98023 * 180.02562 * 4 3 2 6 6 N 1.39665 * 120.02236 * 179.97438 * 5 4 3 7 7 C 1.39791 * 120.00153 * 151.55299 * 6 5 4 8 8 C 1.38971 * 120.00659 * 145.71190 * 7 6 5 9 9 C 1.38003 * 119.99154 * 179.97438 * 8 7 6 10 10 C 1.38908 * 120.00654 * 0.02562 * 9 8 7 11 11 O 1.35789 * 119.99162 * 179.97438 * 10 9 8 12 12 C 1.34811 * 117.00085 * 5.77206 * 11 10 9 13 13 H 1.08001 * 119.99837 * 4.89398 * 12 11 10 14 14 C 1.38608 * 120.00079 * 184.88767 * 12 11 10 15 15 N 1.31584 * 120.00002 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00202 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46998 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47238 * 120.00085 * 16 14 12 19 19 H 1.48495 * 109.47282 * 240.00503 * 16 14 12 20 20 C 1.38917 * 120.01667 * 0.25705 * 10 9 8 21 21 C 1.37997 * 120.00427 * 359.48523 * 20 10 9 22 22 C 1.38886 * 119.95304 * 0.24792 * 5 4 3 23 23 C 1.38619 * 119.98143 * 359.49620 * 22 5 4 24 24 O 1.35897 * 119.99160 * 180.22670 * 23 22 5 25 25 C 1.42901 * 117.00056 * 180.29989 * 24 23 22 26 26 C 1.38703 * 119.98892 * 0.02562 * 3 2 1 27 27 H 1.08994 * 109.46927 * 300.00385 * 1 2 3 28 28 H 1.09007 * 109.46671 * 60.00252 * 1 2 3 29 29 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00927 * 0.02562 * 4 3 2 31 31 H 0.96998 * 120.00106 * 331.55871 * 6 5 4 32 32 H 1.07996 * 120.00870 * 359.96038 * 8 7 6 33 33 H 1.08004 * 119.99346 * 180.02562 * 9 8 7 34 34 H 0.97006 * 119.99616 * 180.02562 * 15 14 12 35 35 H 1.08002 * 119.99712 * 179.74726 * 20 10 9 36 36 H 1.08000 * 120.00476 * 180.22947 * 21 20 10 37 37 H 1.08003 * 120.00505 * 179.74800 * 22 5 4 38 38 H 1.08997 * 109.47102 * 299.99870 * 25 24 23 39 39 H 1.09000 * 109.47404 * 60.00497 * 25 24 23 40 40 H 1.09005 * 109.46570 * 180.02562 * 25 24 23 41 41 H 1.08004 * 119.98094 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 3.4304 1.2830 0.0005 5 6 4.0608 2.5206 0.0011 6 7 5.4555 2.5944 0.0022 7 6 6.0976 3.6944 -0.5740 8 6 7.2822 4.1727 -0.0268 9 6 7.9161 5.2582 -0.5961 10 6 7.3701 5.8731 -1.7156 11 8 7.9939 6.9415 -2.2753 12 6 9.1973 7.2808 -1.7712 13 1 9.6584 6.6649 -1.0133 14 6 9.8429 8.4200 -2.2258 15 7 9.2810 9.1706 -3.1490 16 14 11.5107 8.8898 -1.5279 17 1 11.9217 7.8885 -0.5112 18 1 12.5137 8.9234 -2.6225 19 1 11.4229 10.2305 -0.8956 20 6 6.1830 5.3989 -2.2593 21 6 5.5513 4.3101 -1.6937 22 6 3.3032 3.6846 0.0063 23 6 1.9190 3.6103 0.0004 24 8 1.1776 4.7492 0.0008 25 6 -0.2434 4.5982 0.0012 26 6 1.2904 2.3739 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 4.0186 0.3772 0.0005 31 1 5.9785 1.8825 0.4026 32 1 7.7064 3.6951 0.8440 33 1 8.8369 5.6297 -0.1712 34 1 9.7330 9.9677 -3.4674 35 1 5.7565 5.8797 -3.1273 36 1 4.6303 3.9391 -2.1186 37 1 3.7925 4.6474 0.0108 38 1 -0.5507 4.0491 -0.8888 39 1 -0.5503 4.0488 0.8912 40 1 -0.7132 5.5819 0.0011 41 1 0.2119 2.3169 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212607840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:22 Heat of formation + Delta-G solvation = -37.860570 kcal Electronic energy + Delta-G solvation = -24943.732004 eV Core-core repulsion = 21176.648911 eV Total energy + Delta-G solvation = -3767.083094 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.63033 -39.25410 -38.88123 -37.88460 -36.17215 -33.86877 -32.17404 -30.49849 -30.24164 -29.32465 -28.18518 -27.07481 -26.62518 -25.20005 -22.68586 -22.19682 -21.65221 -20.67026 -18.86669 -17.91602 -17.38445 -16.95037 -16.62379 -16.07866 -16.00677 -15.60615 -15.46437 -15.43747 -14.77742 -14.51728 -14.31884 -13.80406 -13.51439 -13.36895 -12.87672 -12.73133 -12.61798 -12.51563 -12.27180 -11.97328 -11.73590 -11.61369 -11.50230 -11.35312 -11.23036 -11.10967 -10.79506 -10.63244 -10.41353 -9.69516 -9.32744 -8.82018 -8.26174 -8.05008 -7.99782 -6.64398 -6.43362 -4.00679 1.39261 1.53247 2.14678 2.38279 2.95498 3.13356 3.14766 3.19386 3.20251 3.77731 3.82940 3.98096 4.56160 4.75291 4.85405 4.88530 4.93791 4.97284 5.11474 5.12100 5.18520 5.26400 5.29390 5.29741 5.40985 5.53626 5.62852 5.72969 6.00287 6.16374 6.22177 6.29019 6.37293 6.46947 6.55422 6.79655 6.89988 7.04821 7.09975 7.22613 7.34516 7.45930 7.54797 7.83824 8.00680 8.02004 9.02338 9.72985 10.74809 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.025161 B = 0.002598 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.572302 B =10775.665426 C =11495.633257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.194 3.806 4 C -0.249 4.249 5 C 0.276 3.724 6 N -0.675 5.675 7 C 0.063 3.937 8 C -0.100 4.100 9 C -0.211 4.211 10 C 0.139 3.861 11 O -0.178 6.178 12 C -0.389 4.389 13 H 0.092 0.908 14 C 0.038 3.962 15 N -0.863 5.863 16 Si 0.940 3.060 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.167 4.167 21 C -0.097 4.097 22 C -0.236 4.236 23 C 0.196 3.804 24 O -0.311 6.311 25 C 0.029 3.971 26 C -0.342 4.342 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.405 0.595 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.269 0.731 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.099 0.901 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.575 -14.695 7.357 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.148 3.852 4 C -0.272 4.272 5 C 0.173 3.827 6 N -0.298 5.298 7 C -0.031 4.031 8 C -0.121 4.121 9 C -0.231 4.231 10 C 0.085 3.915 11 O -0.082 6.082 12 C -0.466 4.466 13 H 0.109 0.891 14 C -0.166 4.166 15 N -0.498 5.498 16 Si 0.765 3.235 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.187 4.187 21 C -0.117 4.117 22 C -0.258 4.258 23 C 0.149 3.851 24 O -0.224 6.224 25 C -0.066 4.066 26 C -0.363 4.363 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.147 0.853 31 H 0.241 0.759 32 H 0.128 0.872 33 H 0.148 0.852 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.156 0.844 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.411 -14.184 6.974 22.785 hybrid contribution 0.513 -0.081 0.574 0.775 sum -15.897 -14.265 7.549 22.654 Atomic orbital electron populations 1.23021 0.78621 1.03659 1.01311 1.86053 1.21218 1.27158 1.88493 1.18257 0.91308 0.83268 0.92398 1.19727 0.91476 0.96994 1.19040 1.16955 0.83527 0.91570 0.90606 1.41816 1.01913 1.23123 1.62964 1.17214 0.96275 0.93335 0.96247 1.20499 0.95808 0.96775 0.98990 1.21010 1.03363 0.99347 0.99333 1.19369 0.91872 0.88747 0.91489 1.84000 1.31694 1.39156 1.53333 1.21338 0.92227 1.09594 1.23415 0.89097 1.25276 0.99843 0.95048 0.96449 1.70063 1.38216 1.14633 1.26863 0.85655 0.80252 0.78845 0.78719 1.19133 1.20185 1.20175 1.20068 0.96236 0.99369 1.03037 1.20517 1.00055 0.96805 0.94371 1.20043 0.90326 0.99122 1.16328 1.18360 0.90507 0.84262 0.91943 1.86125 1.18803 1.29254 1.88203 1.23029 0.78834 1.03690 1.01073 1.20971 0.99935 0.91850 1.23532 0.92773 0.92722 0.88385 0.85312 0.75941 0.87159 0.85159 0.92105 0.86127 0.86595 0.84388 0.92795 0.92877 0.88274 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.55 10.49 -19.38 -0.20 -3.76 16 3 C 0.19 2.45 6.68 -39.26 -0.26 2.19 16 4 C -0.25 -3.29 9.88 -39.20 -0.39 -3.67 16 5 C 0.28 3.98 5.93 -83.81 -0.50 3.48 16 6 N -0.68 -9.64 5.44 -8.40 -0.05 -9.69 16 7 C 0.06 1.09 5.80 -83.68 -0.49 0.60 16 8 C -0.10 -1.79 9.96 -39.40 -0.39 -2.19 16 9 C -0.21 -4.48 9.13 -39.42 -0.36 -4.84 16 10 C 0.14 3.32 6.65 -39.08 -0.26 3.06 16 11 O -0.18 -5.05 9.75 -0.02 0.00 -5.05 16 12 C -0.39 -10.80 9.44 30.87 0.29 -10.51 16 13 H 0.09 2.33 5.28 -52.49 -0.28 2.05 16 14 C 0.04 1.04 5.49 -17.52 -0.10 0.94 16 15 N -0.86 -25.30 13.67 55.48 0.76 -24.54 16 16 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 17 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 20 C -0.17 -3.54 9.98 -39.42 -0.39 -3.93 16 21 C -0.10 -1.79 7.97 -39.40 -0.31 -2.10 16 22 C -0.24 -3.62 8.01 -39.20 -0.31 -3.94 16 23 C 0.20 2.73 6.68 -39.27 -0.26 2.47 16 24 O -0.31 -4.13 10.49 -19.42 -0.20 -4.33 16 25 C 0.03 0.24 9.81 101.05 0.99 1.23 16 26 C -0.34 -4.11 8.02 -39.24 -0.31 -4.42 16 27 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.05 0.34 7.66 -51.92 -0.40 -0.06 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.40 4.76 8.91 -40.82 -0.36 4.40 16 32 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.13 2.77 5.70 -52.48 -0.30 2.47 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 36 H 0.12 2.00 6.90 -52.49 -0.36 1.63 16 37 H 0.14 2.37 6.67 -52.48 -0.35 2.02 16 38 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 39 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.13 1.20 4.51 -52.48 -0.24 0.96 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -32.11 347.36 -6.28 -38.39 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -4.73 Total: 8.74 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -2.07 Total: -20.44 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.71 Total: -34.23 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.41 Total: -13.14 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.11 -6.28 -38.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212607840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.528 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds