Wall clock time and date at job start Tue Mar 31 2020 10:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35887 * 117.00342 * 2 1 4 4 C 1.38631 * 119.99267 * 179.97438 * 3 2 1 5 5 C 1.38883 * 119.98023 * 180.02562 * 4 3 2 6 6 N 1.39665 * 120.02236 * 179.97438 * 5 4 3 7 7 C 1.39791 * 120.00153 * 151.55299 * 6 5 4 8 8 C 1.38971 * 120.00659 * 145.71190 * 7 6 5 9 9 C 1.38003 * 119.99154 * 179.97438 * 8 7 6 10 10 C 1.38908 * 120.00654 * 0.02562 * 9 8 7 11 11 O 1.35789 * 119.99162 * 179.97438 * 10 9 8 12 12 C 1.34811 * 117.00085 * 5.77206 * 11 10 9 13 13 H 1.08001 * 119.99837 * 4.89398 * 12 11 10 14 14 C 1.38608 * 120.00079 * 184.88767 * 12 11 10 15 15 N 1.31584 * 120.00002 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00202 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46998 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47238 * 120.00085 * 16 14 12 19 19 H 1.48495 * 109.47282 * 240.00503 * 16 14 12 20 20 C 1.38917 * 120.01667 * 0.25705 * 10 9 8 21 21 C 1.37997 * 120.00427 * 359.48523 * 20 10 9 22 22 C 1.38886 * 119.95304 * 0.24792 * 5 4 3 23 23 C 1.38619 * 119.98143 * 359.49620 * 22 5 4 24 24 O 1.35897 * 119.99160 * 180.22670 * 23 22 5 25 25 C 1.42901 * 117.00056 * 180.29989 * 24 23 22 26 26 C 1.38703 * 119.98892 * 0.02562 * 3 2 1 27 27 H 1.08994 * 109.46927 * 300.00385 * 1 2 3 28 28 H 1.09007 * 109.46671 * 60.00252 * 1 2 3 29 29 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00927 * 0.02562 * 4 3 2 31 31 H 0.96998 * 120.00106 * 331.55871 * 6 5 4 32 32 H 1.07996 * 120.00870 * 359.96038 * 8 7 6 33 33 H 1.08004 * 119.99346 * 180.02562 * 9 8 7 34 34 H 0.97006 * 119.99616 * 180.02562 * 15 14 12 35 35 H 1.08002 * 119.99712 * 179.74726 * 20 10 9 36 36 H 1.08000 * 120.00476 * 180.22947 * 21 20 10 37 37 H 1.08003 * 120.00505 * 179.74800 * 22 5 4 38 38 H 1.08997 * 109.47102 * 299.99870 * 25 24 23 39 39 H 1.09000 * 109.47404 * 60.00497 * 25 24 23 40 40 H 1.09005 * 109.46570 * 180.02562 * 25 24 23 41 41 H 1.08004 * 119.98094 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 3.4304 1.2830 0.0005 5 6 4.0608 2.5206 0.0011 6 7 5.4555 2.5944 0.0022 7 6 6.0976 3.6944 -0.5740 8 6 7.2822 4.1727 -0.0268 9 6 7.9161 5.2582 -0.5961 10 6 7.3701 5.8731 -1.7156 11 8 7.9939 6.9415 -2.2753 12 6 9.1973 7.2808 -1.7712 13 1 9.6584 6.6649 -1.0133 14 6 9.8429 8.4200 -2.2258 15 7 9.2810 9.1706 -3.1490 16 14 11.5107 8.8898 -1.5279 17 1 11.9217 7.8885 -0.5112 18 1 12.5137 8.9234 -2.6225 19 1 11.4229 10.2305 -0.8956 20 6 6.1830 5.3989 -2.2593 21 6 5.5513 4.3101 -1.6937 22 6 3.3032 3.6846 0.0063 23 6 1.9190 3.6103 0.0004 24 8 1.1776 4.7492 0.0008 25 6 -0.2434 4.5982 0.0012 26 6 1.2904 2.3739 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 4.0186 0.3772 0.0005 31 1 5.9785 1.8825 0.4026 32 1 7.7064 3.6951 0.8440 33 1 8.8369 5.6297 -0.1712 34 1 9.7330 9.9677 -3.4674 35 1 5.7565 5.8797 -3.1273 36 1 4.6303 3.9391 -2.1186 37 1 3.7925 4.6474 0.0108 38 1 -0.5507 4.0491 -0.8888 39 1 -0.5503 4.0488 0.8912 40 1 -0.7132 5.5819 0.0011 41 1 0.2119 2.3169 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212607840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:21 Heat of formation + Delta-G solvation = -58.810276 kcal Electronic energy + Delta-G solvation = -24944.640452 eV Core-core repulsion = 21176.648911 eV Total energy + Delta-G solvation = -3767.991541 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.65254 -40.81020 -39.75711 -39.32716 -37.56145 -35.17830 -34.11017 -31.97383 -31.32301 -30.54623 -29.10804 -28.30255 -27.44052 -27.06425 -23.98873 -23.51730 -22.95999 -22.00986 -20.06420 -19.56880 -18.87888 -18.33278 -17.68739 -17.08017 -16.89695 -16.72719 -16.53740 -16.36343 -16.24269 -15.90937 -15.58244 -15.50252 -15.26080 -14.59709 -14.37782 -14.03753 -13.82418 -13.52403 -13.40870 -13.28304 -13.11256 -12.95635 -12.76224 -12.43634 -12.34277 -12.19980 -12.16053 -12.07429 -11.95155 -11.24386 -10.90673 -10.54386 -9.85353 -9.38035 -9.03773 -8.43568 -8.12290 -6.09318 0.25339 0.47230 0.54400 0.86448 1.37490 1.45734 1.55700 2.01747 2.20286 2.37609 2.67679 2.74578 2.88354 3.19009 3.54249 3.99985 4.04498 4.07609 4.11582 4.17343 4.28810 4.36447 4.38319 4.41946 4.45109 4.49516 4.54337 4.60722 4.72501 4.75542 4.83321 5.07862 5.15440 5.19325 5.29148 5.30719 5.34746 5.47738 5.55694 5.68627 5.93107 6.05292 6.23292 6.45800 6.57257 6.83048 7.01466 7.83334 8.80218 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.025161 B = 0.002598 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.572302 B =10775.665426 C =11495.633257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.194 3.806 4 C -0.249 4.249 5 C 0.266 3.734 6 N -0.669 5.669 7 C 0.097 3.903 8 C -0.098 4.098 9 C -0.211 4.211 10 C 0.097 3.903 11 O -0.233 6.233 12 C -0.408 4.408 13 H 0.103 0.897 14 C -0.026 4.026 15 N -0.923 5.923 16 Si 1.019 2.981 17 H -0.250 1.250 18 H -0.270 1.270 19 H -0.270 1.270 20 C -0.174 4.174 21 C -0.096 4.096 22 C -0.260 4.260 23 C 0.189 3.811 24 O -0.336 6.336 25 C 0.018 3.982 26 C -0.331 4.331 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.122 0.878 30 H 0.143 0.857 31 H 0.421 0.579 32 H 0.149 0.851 33 H 0.127 0.873 34 H 0.271 0.729 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.116 0.884 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.180 -17.743 9.357 27.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.147 3.853 4 C -0.272 4.272 5 C 0.165 3.835 6 N -0.294 5.294 7 C 0.002 3.998 8 C -0.118 4.118 9 C -0.231 4.231 10 C 0.047 3.953 11 O -0.140 6.140 12 C -0.485 4.485 13 H 0.121 0.879 14 C -0.223 4.223 15 N -0.562 5.562 16 Si 0.838 3.162 17 H -0.173 1.173 18 H -0.195 1.195 19 H -0.195 1.195 20 C -0.194 4.194 21 C -0.116 4.116 22 C -0.282 4.282 23 C 0.142 3.858 24 O -0.250 6.250 25 C -0.076 4.076 26 C -0.351 4.351 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.161 0.839 31 H 0.259 0.741 32 H 0.167 0.833 33 H 0.145 0.855 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.148 0.852 37 H 0.130 0.870 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.134 0.866 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -18.087 -17.321 9.014 26.616 hybrid contribution 0.540 0.515 0.061 0.749 sum -17.546 -16.806 9.075 25.936 Atomic orbital electron populations 1.23386 0.76289 1.05745 1.02327 1.86055 1.23613 1.26258 1.88049 1.18377 0.91360 0.84062 0.91522 1.19877 0.92185 0.96823 1.18321 1.16963 0.83162 0.91858 0.91524 1.41686 1.02225 1.22541 1.62968 1.17296 0.95246 0.92648 0.94608 1.20785 0.95721 0.95634 0.99676 1.21109 1.03319 1.00062 0.98576 1.19821 0.93197 0.88992 0.93302 1.83959 1.32701 1.41679 1.55660 1.21845 0.92766 1.10169 1.23677 0.87936 1.26579 1.04274 0.94711 0.96737 1.70214 1.40690 1.15791 1.29465 0.84524 0.74556 0.78796 0.78304 1.17276 1.19502 1.19538 1.20206 0.95829 1.00165 1.03171 1.20634 1.00331 0.96006 0.94661 1.20006 0.91494 0.98354 1.18375 1.18461 0.90246 0.85261 0.91805 1.86102 1.21267 1.29519 1.88079 1.23377 0.76332 1.05442 1.02488 1.21212 1.01414 0.90771 1.21713 0.91572 0.91782 0.86000 0.83875 0.74055 0.83341 0.85496 0.91968 0.86680 0.85177 0.86985 0.91450 0.91214 0.86611 0.82556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.28 16 2 O -0.33 -6.16 10.49 -92.27 -0.97 -7.13 16 3 C 0.19 4.28 6.68 22.48 0.15 4.43 16 4 C -0.25 -5.88 9.88 22.52 0.22 -5.65 16 5 C 0.27 7.14 5.93 38.20 0.23 7.37 16 6 N -0.67 -17.46 5.44 -180.48 -0.98 -18.44 16 7 C 0.10 3.22 5.80 38.22 0.22 3.44 16 8 C -0.10 -3.34 9.96 22.39 0.22 -3.12 16 9 C -0.21 -9.09 9.13 22.37 0.20 -8.89 16 10 C 0.10 4.88 6.65 22.59 0.15 5.03 16 11 O -0.23 -14.13 9.75 -22.98 -0.22 -14.36 16 12 C -0.41 -23.80 9.44 67.91 0.64 -23.16 16 13 H 0.10 5.44 5.28 -2.91 -0.02 5.42 16 14 C -0.03 -1.49 5.49 84.82 0.47 -1.02 16 15 N -0.92 -57.25 13.67 21.61 0.30 -56.96 16 16 Si 1.02 43.09 29.55 68.60 2.03 45.12 16 17 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 20 C -0.17 -7.69 9.98 22.38 0.22 -7.47 16 21 C -0.10 -3.53 7.97 22.39 0.18 -3.35 16 22 C -0.26 -7.77 8.01 22.52 0.18 -7.59 16 23 C 0.19 4.97 6.68 22.47 0.15 5.12 16 24 O -0.34 -8.50 10.49 -92.39 -0.97 -9.47 16 25 C 0.02 0.25 9.81 113.37 1.11 1.36 16 26 C -0.33 -6.94 8.02 22.49 0.18 -6.76 16 27 H 0.07 0.51 7.66 -2.39 -0.02 0.50 16 28 H 0.06 0.53 7.66 -2.38 -0.02 0.51 16 29 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 31 H 0.42 8.49 8.91 -92.71 -0.83 7.66 16 32 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 33 H 0.13 5.49 5.70 -2.91 -0.02 5.47 16 34 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 35 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 36 H 0.13 4.42 6.90 -2.91 -0.02 4.40 16 37 H 0.11 3.90 6.67 -2.91 -0.02 3.88 16 38 H 0.07 0.76 7.66 -2.39 -0.02 0.75 16 39 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 40 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.16 2.27 4.51 -2.91 -0.01 2.26 16 Total: -1.00 -74.97 347.36 5.08 -69.89 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.26 Total: 30.32 kcal Atomic # 6 Polarization: -44.61 SS G_CDS: 5.64 Total: -38.97 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -0.69 Total: -75.40 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -2.16 Total: -30.96 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -74.97 5.08 -69.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212607840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.080 kcal (2) G-P(sol) polarization free energy of solvation -74.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds