Wall clock time and date at job start Tue Mar 31 2020 10:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36001 * 117.00439 * 2 1 4 4 C 1.38615 * 120.05082 * 359.97438 * 3 2 1 5 5 C 1.38261 * 120.10376 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.22021 * 0.04996 * 5 4 3 7 7 C 1.38618 * 120.10600 * 359.97438 * 6 5 4 8 8 O 1.36003 * 120.05285 * 179.97438 * 7 6 5 9 9 C 1.42894 * 117.00028 * 354.74930 * 8 7 6 10 10 C 1.39162 * 120.05591 * 179.73022 * 3 2 1 11 11 N 1.40225 * 120.10570 * 0.02562 * 10 3 2 12 12 C 1.39720 * 119.99992 * 278.15425 * 11 10 3 13 13 C 1.38992 * 120.01109 * 355.45159 * 12 11 10 14 14 C 1.37993 * 119.99103 * 179.71945 * 13 12 11 15 15 C 1.38913 * 120.00502 * 0.55368 * 14 13 12 16 16 O 1.35793 * 119.99061 * 179.69927 * 15 14 13 17 17 C 1.34809 * 116.99881 * 182.93088 * 16 15 14 18 18 H 1.07998 * 120.00502 * 5.40666 * 17 16 15 19 19 C 1.38608 * 119.99599 * 185.39439 * 17 16 15 20 20 N 1.31593 * 119.99798 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00152 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47468 * 89.99540 * 21 19 17 23 23 H 1.48498 * 109.47077 * 209.99494 * 21 19 17 24 24 H 1.48500 * 109.47389 * 329.99454 * 21 19 17 25 25 C 1.38923 * 120.02325 * 359.72335 * 15 14 13 26 26 C 1.37990 * 120.00595 * 359.97438 * 25 15 14 27 27 H 1.08999 * 109.46742 * 299.99991 * 1 2 3 28 28 H 1.08996 * 109.47487 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46800 * 59.99617 * 1 2 3 30 30 H 1.08001 * 119.95333 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.88826 * 180.02562 * 5 4 3 32 32 H 1.07996 * 119.94552 * 180.02562 * 6 5 4 33 33 H 1.08995 * 109.47168 * 179.97438 * 9 8 7 34 34 H 1.08996 * 109.47329 * 299.99788 * 9 8 7 35 35 H 1.09008 * 109.47183 * 59.99889 * 9 8 7 36 36 H 0.97001 * 119.99593 * 98.16165 * 11 10 3 37 37 H 1.08002 * 120.00671 * 359.97438 * 13 12 11 38 38 H 1.07998 * 119.99343 * 180.27707 * 14 13 12 39 39 H 0.97004 * 119.99842 * 180.02562 * 20 19 17 40 40 H 1.07994 * 119.99795 * 179.97438 * 25 15 14 41 41 H 1.08002 * 120.00263 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2927 2.3750 -0.0005 5 6 1.9193 3.6074 0.0000 6 6 3.2997 3.6863 0.0000 7 6 4.0623 2.5287 0.0001 8 8 5.4200 2.6075 -0.0004 9 6 5.9941 3.9108 -0.1175 10 6 3.4361 1.2858 0.0057 11 7 4.2031 0.1119 0.0109 12 6 4.4365 -0.5648 1.2108 13 6 3.9897 -0.0255 2.4113 14 6 4.2153 -0.6970 3.5955 15 6 4.8991 -1.9062 3.5891 16 8 5.1263 -2.5637 4.7552 17 6 5.8478 -3.7004 4.6864 18 1 6.2898 -4.0035 3.7488 19 6 6.0223 -4.4801 5.8190 20 7 6.7270 -5.5894 5.7519 21 14 5.2574 -3.9561 7.4406 22 1 3.8946 -4.5349 7.5551 23 1 6.0977 -4.4424 8.5643 24 1 5.1718 -2.4744 7.4917 25 6 5.3509 -2.4428 2.3900 26 6 5.1202 -1.7750 1.2047 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 0.2141 2.3186 -0.0014 31 1 1.3286 4.5115 0.0000 32 1 3.7846 4.6513 0.0009 33 1 7.0811 3.8315 -0.1043 34 1 5.6741 4.3660 -1.0547 35 1 5.6651 4.5291 0.7178 36 1 4.5716 -0.2303 -0.8186 37 1 3.4623 0.9170 2.4170 38 1 3.8642 -0.2801 4.5279 39 1 6.8489 -6.1352 6.5445 40 1 5.8828 -3.3827 2.3854 41 1 5.4718 -2.1920 0.2725 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212609060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:30 Heat of formation + Delta-G solvation = -27.834212 kcal Electronic energy + Delta-G solvation = -25681.187088 eV Core-core repulsion = 21914.538770 eV Total energy + Delta-G solvation = -3766.648318 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75886 -39.05795 -38.94452 -37.12509 -36.39465 -34.31058 -32.15361 -30.37014 -29.73953 -29.68576 -27.93537 -27.36542 -26.58049 -24.86198 -22.63703 -21.94123 -21.84110 -20.56376 -18.76842 -17.75196 -17.29416 -16.89680 -16.71082 -16.48681 -16.33130 -15.75479 -15.59472 -14.89662 -14.80401 -14.29428 -13.74322 -13.68555 -13.53225 -13.46594 -12.90097 -12.72313 -12.58294 -12.36789 -12.13208 -12.01403 -11.84069 -11.67813 -11.51863 -11.48814 -11.08153 -10.86284 -10.80130 -10.53224 -10.03194 -9.32366 -9.19067 -8.55575 -8.35752 -8.28425 -8.12191 -6.43052 -6.24415 -3.88225 1.14686 1.27378 2.25120 2.59114 2.77890 3.32447 3.35829 3.51242 3.52122 3.56850 3.82784 4.38240 4.62918 4.69485 4.79879 4.91901 4.95857 4.99242 5.00322 5.02614 5.12491 5.13524 5.26291 5.31452 5.37063 5.42391 5.71460 5.80080 5.96289 6.10641 6.24533 6.24685 6.25391 6.31426 6.55047 6.89001 6.91168 7.12668 7.21433 7.26585 7.45302 7.62118 7.91342 8.09050 8.21056 8.29668 9.12672 9.80222 10.84391 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.003336 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.597291 B = 8390.599830 C = 8985.106300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.295 6.295 3 C 0.163 3.837 4 C -0.244 4.244 5 C -0.045 4.045 6 C -0.244 4.244 7 C 0.159 3.841 8 O -0.298 6.298 9 C 0.026 3.974 10 C 0.094 3.906 11 N -0.690 5.690 12 C 0.143 3.857 13 C -0.135 4.135 14 C -0.151 4.151 15 C 0.118 3.882 16 O -0.229 6.229 17 C -0.382 4.382 18 H 0.103 0.897 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.905 3.095 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.261 1.261 25 C -0.178 4.178 26 C -0.138 4.138 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.399 0.601 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.276 0.724 40 H 0.134 0.866 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.051 19.626 -14.727 26.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.206 6.206 3 C 0.114 3.886 4 C -0.264 4.264 5 C -0.063 4.063 6 C -0.263 4.263 7 C 0.111 3.889 8 O -0.210 6.210 9 C -0.069 4.069 10 C -0.002 4.002 11 N -0.322 5.322 12 C 0.046 3.954 13 C -0.157 4.157 14 C -0.171 4.171 15 C 0.068 3.932 16 O -0.136 6.136 17 C -0.458 4.458 18 H 0.120 0.880 19 C -0.143 4.143 20 N -0.529 5.529 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.185 1.185 25 C -0.197 4.197 26 C -0.160 4.160 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.235 0.765 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.151 0.849 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.873 19.227 -14.274 25.902 hybrid contribution -0.406 0.381 0.309 0.636 sum -10.279 19.608 -13.965 26.175 Atomic orbital electron populations 1.23099 0.78568 1.04139 1.01083 1.86240 1.20926 1.25855 1.87609 1.19193 0.91135 0.84731 0.93529 1.21076 1.00084 0.91918 1.13281 1.20678 0.93622 0.97018 0.94991 1.21056 0.94740 0.97198 1.13338 1.19169 0.82882 0.92855 0.93981 1.86212 1.16794 1.30650 1.87350 1.23092 0.99411 0.83416 1.00954 1.15791 0.86590 0.85316 1.12481 1.41122 1.58813 1.25045 1.07197 1.17394 0.99997 0.92719 0.85276 1.20091 1.04850 0.99979 0.90775 1.19957 1.04622 0.94926 0.97586 1.18960 0.95989 0.92338 0.85960 1.83579 1.66223 1.36737 1.27032 1.20706 1.28153 0.97381 0.99539 0.87961 1.24415 0.96586 0.94434 0.98832 1.69674 1.39549 1.13038 1.30677 0.86192 0.78968 0.80116 0.81655 1.20134 1.21060 1.18470 1.21074 1.05232 1.02017 0.91415 1.20252 1.03431 0.94623 0.97717 0.92571 0.88111 0.92824 0.85232 0.85537 0.85264 0.88163 0.92773 0.92610 0.76495 0.87610 0.86754 0.91403 0.84868 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.29 -4.02 10.24 -19.74 -0.20 -4.23 16 3 C 0.16 2.15 6.62 -39.10 -0.26 1.89 16 4 C -0.24 -2.54 9.03 -39.43 -0.36 -2.90 16 5 C -0.04 -0.42 10.04 -39.56 -0.40 -0.81 16 6 C -0.24 -2.49 9.05 -39.43 -0.36 -2.85 16 7 C 0.16 2.06 6.69 -39.10 -0.26 1.80 16 8 O -0.30 -3.87 10.24 -19.75 -0.20 -4.07 16 9 C 0.03 0.22 9.83 101.05 0.99 1.21 16 10 C 0.09 1.35 4.40 -83.33 -0.37 0.99 16 11 N -0.69 -10.85 4.93 -8.14 -0.04 -10.89 16 12 C 0.14 2.67 6.63 -83.70 -0.56 2.12 16 13 C -0.13 -2.64 9.31 -39.39 -0.37 -3.01 16 14 C -0.15 -3.27 9.98 -39.42 -0.39 -3.66 16 15 C 0.12 2.91 6.65 -39.08 -0.26 2.65 16 16 O -0.23 -6.36 8.58 -0.03 0.00 -6.36 16 17 C -0.38 -11.22 9.92 30.87 0.31 -10.92 16 18 H 0.10 3.06 5.47 -52.49 -0.29 2.78 16 19 C 0.06 1.71 5.49 -17.52 -0.10 1.62 16 20 N -0.89 -26.68 13.97 55.48 0.77 -25.90 16 21 Si 0.90 22.63 28.61 -169.99 -4.86 17.77 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.26 -6.55 7.11 56.52 0.40 -6.15 16 25 C -0.18 -4.07 9.14 -39.42 -0.36 -4.43 16 26 C -0.14 -2.71 9.89 -39.39 -0.39 -3.10 16 27 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 30 H 0.13 1.04 6.29 -52.49 -0.33 0.71 16 31 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.35 7.89 -51.93 -0.41 -0.06 16 35 H 0.06 0.40 7.43 -51.92 -0.39 0.02 16 36 H 0.40 5.62 8.84 -40.82 -0.36 5.25 16 37 H 0.11 1.93 6.93 -52.49 -0.36 1.57 16 38 H 0.11 2.32 8.06 -52.49 -0.42 1.89 16 39 H 0.28 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.13 3.17 5.65 -52.49 -0.30 2.87 16 41 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -33.85 349.27 -6.21 -40.06 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -4.81 Total: 6.55 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -2.13 Total: -18.18 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.73 Total: -36.80 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.40 Total: -14.66 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.86 Total: 17.77 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.85 -6.21 -40.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212609060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.225 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds