Wall clock time and date at job start Tue Mar 31 2020 10:54:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35984 * 116.99741 * 2 1
4 4 C 1.38707 * 119.96225 * 0.02562 * 3 2 1
5 5 C 1.38196 * 120.10707 * 179.97438 * 4 3 2
6 6 C 1.38726 * 120.03264 * 359.71941 * 5 4 3
7 7 N 1.40176 * 120.04153 * 180.30168 * 6 5 4
8 8 C 1.39733 * 119.99800 * 246.82357 * 7 6 5
9 9 C 1.38994 * 120.01127 * 5.79913 * 8 7 6
10 10 C 1.37985 * 119.98818 * 179.74167 * 9 8 7
11 11 C 1.38915 * 120.00968 * 0.52358 * 10 9 8
12 12 O 1.35783 * 119.99049 * 179.70394 * 11 10 9
13 13 C 1.34812 * 117.00032 * 186.08293 * 12 11 10
14 14 H 1.07996 * 120.00081 * 354.88466 * 13 12 11
15 15 C 1.38612 * 120.00077 * 174.89022 * 13 12 11
16 16 N 1.31583 * 119.99980 * 179.97438 * 15 13 12
17 17 Si 1.86800 * 119.99926 * 359.97438 * 15 13 12
18 18 H 1.48496 * 109.47208 * 89.99623 * 17 15 13
19 19 H 1.48502 * 109.47222 * 209.99866 * 17 15 13
20 20 H 1.48503 * 109.47190 * 330.00093 * 17 15 13
21 21 C 1.38918 * 120.01960 * 359.73139 * 11 10 9
22 22 C 1.37991 * 120.00856 * 0.02562 * 21 11 10
23 23 C 1.39317 * 119.92141 * 0.55515 * 6 5 4
24 24 O 1.35994 * 120.05935 * 179.72075 * 23 6 5
25 25 C 1.42899 * 117.00500 * 179.72701 * 24 23 6
26 26 C 1.38502 * 119.89312 * 359.44887 * 23 6 5
27 27 H 1.09005 * 109.46713 * 180.02562 * 1 2 3
28 28 H 1.08997 * 109.47223 * 299.99406 * 1 2 3
29 29 H 1.08996 * 109.47535 * 60.00336 * 1 2 3
30 30 H 1.07993 * 119.94470 * 0.02562 * 4 3 2
31 31 H 1.07996 * 119.98843 * 180.02562 * 5 4 3
32 32 H 0.96995 * 119.99851 * 66.82879 * 7 6 5
33 33 H 1.08000 * 120.00307 * 359.96651 * 9 8 7
34 34 H 1.08006 * 119.99102 * 180.25010 * 10 9 8
35 35 H 0.97004 * 119.99863 * 179.97438 * 16 15 13
36 36 H 1.07994 * 119.99795 * 180.02562 * 21 11 10
37 37 H 1.07999 * 120.00037 * 179.97438 * 22 21 11
38 38 H 1.09003 * 109.46977 * 179.97438 * 25 24 23
39 39 H 1.09002 * 109.46679 * 59.99924 * 25 24 23
40 40 H 1.09000 * 109.47038 * 299.99743 * 25 24 23
41 41 H 1.07996 * 120.01837 * 180.25253 * 26 23 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2117 0.0000
4 6 1.2900 2.3744 0.0005
5 6 1.9142 3.6074 0.0011
6 6 3.2994 3.6843 0.0070
7 7 3.9327 4.9348 0.0139
8 6 4.6777 5.3468 -1.0942
9 6 4.6927 4.5727 -2.2485
10 6 5.4244 4.9827 -3.3443
11 6 6.1545 6.1632 -3.2901
12 8 6.8791 6.5631 -4.3665
13 6 7.6634 7.6480 -4.2075
14 1 7.6328 8.2057 -3.2831
15 6 8.5090 8.0479 -5.2304
16 7 9.2742 9.1071 -5.0754
17 14 8.5624 7.0830 -6.8290
18 1 7.5611 7.6372 -7.7754
19 1 9.9183 7.1878 -7.4255
20 1 8.2500 5.6569 -6.5572
21 6 6.1440 6.9344 -2.1347
22 6 5.4087 6.5278 -1.0401
23 6 4.0602 2.5173 0.0006
24 8 5.4182 2.5895 0.0006
25 6 6.1338 1.3526 0.0000
26 6 3.4314 1.2833 0.0000
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5137 0.8900
29 1 -0.3634 0.5137 -0.8900
30 1 0.2117 2.3161 0.0014
31 1 1.3235 4.5115 0.0019
32 1 3.8538 5.5141 0.7879
33 1 4.1290 3.6525 -2.2891
34 1 5.4328 4.3833 -4.2427
35 1 9.8662 9.3867 -5.7911
36 1 6.7115 7.8523 -2.0930
37 1 5.4009 7.1272 -0.1418
38 1 7.2053 1.5527 -0.0004
39 1 5.8709 0.7813 -0.8903
40 1 5.8710 0.7804 0.8897
41 1 4.0192 0.3773 -0.0008
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001212610092.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:34
Heat of formation + Delta-G solvation = -29.686778 kcal
Electronic energy + Delta-G solvation = -25374.911275 eV
Core-core repulsion = 21608.182624 eV
Total energy + Delta-G solvation = -3766.728651 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.130 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-40.75406 -39.28629 -38.86368 -37.44259 -36.32793 -34.00124 -32.17873 -30.71084
-30.29336 -29.34207 -27.85135 -27.38847 -26.55264 -24.83884 -22.72273 -22.06826
-21.82980 -20.57649 -18.85933 -17.84325 -17.40227 -16.98230 -16.70934 -16.43308
-16.26161 -15.99509 -15.54997 -14.99843 -14.58633 -14.20074 -13.77896 -13.73231
-13.64600 -13.47780 -12.84607 -12.79596 -12.66255 -12.60799 -12.18816 -12.06830
-11.90303 -11.68318 -11.66217 -11.39170 -11.19265 -10.84864 -10.73492 -10.56654
-10.06662 -9.46652 -9.23871 -8.75401 -8.60088 -8.18348 -7.96543 -6.47698
-6.27845 -3.92158 1.17051 1.26786 2.19435 2.52223 2.93575 3.26719
3.30856 3.33309 3.49085 3.54277 3.78847 4.35104 4.58484 4.66369
4.80108 4.84446 4.86552 4.94196 5.05304 5.10214 5.11209 5.15712
5.25310 5.37022 5.44593 5.48149 5.60961 5.69303 5.77333 6.12609
6.18589 6.20147 6.24814 6.33996 6.52916 6.83821 6.89774 7.06473
7.07980 7.29315 7.39231 7.55585 7.86347 8.01926 8.12922 8.22636
9.08878 9.75480 10.80742
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.022531 B = 0.002872 C = 0.002822
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1242.441419 B = 9747.489827 C = 9918.574549
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.319 6.319
3 C 0.153 3.847
4 C -0.235 4.235
5 C -0.058 4.058
6 C 0.102 3.898
7 N -0.696 5.696
8 C 0.132 3.868
9 C -0.128 4.128
10 C -0.153 4.153
11 C 0.122 3.878
12 O -0.228 6.228
13 C -0.383 4.383
14 H 0.103 0.897
15 C 0.059 3.941
16 N -0.888 5.888
17 Si 0.905 3.095
18 H -0.275 1.275
19 H -0.285 1.285
20 H -0.260 1.260
21 C -0.180 4.180
22 C -0.135 4.135
23 C 0.158 3.842
24 O -0.290 6.290
25 C 0.024 3.976
26 C -0.237 4.237
27 H 0.098 0.902
28 H 0.055 0.945
29 H 0.057 0.943
30 H 0.129 0.871
31 H 0.134 0.866
32 H 0.400 0.600
33 H 0.107 0.893
34 H 0.115 0.885
35 H 0.277 0.723
36 H 0.134 0.866
37 H 0.110 0.890
38 H 0.101 0.899
39 H 0.056 0.944
40 H 0.053 0.947
41 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.793 -16.864 12.772 26.399
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.232 6.232
3 C 0.107 3.893
4 C -0.254 4.254
5 C -0.078 4.078
6 C 0.007 3.993
7 N -0.327 5.327
8 C 0.036 3.964
9 C -0.149 4.149
10 C -0.173 4.173
11 C 0.071 3.929
12 O -0.134 6.134
13 C -0.459 4.459
14 H 0.121 0.879
15 C -0.142 4.142
16 N -0.528 5.528
17 Si 0.731 3.269
18 H -0.201 1.201
19 H -0.211 1.211
20 H -0.184 1.184
21 C -0.200 4.200
22 C -0.157 4.157
23 C 0.109 3.891
24 O -0.201 6.201
25 C -0.071 4.071
26 C -0.256 4.256
27 H 0.116 0.884
28 H 0.074 0.926
29 H 0.075 0.925
30 H 0.147 0.853
31 H 0.152 0.848
32 H 0.236 0.764
33 H 0.125 0.875
34 H 0.133 0.867
35 H 0.087 0.913
36 H 0.151 0.849
37 H 0.128 0.872
38 H 0.120 0.880
39 H 0.074 0.926
40 H 0.072 0.928
41 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -15.398 -16.953 12.357 26.023
hybrid contribution -0.124 -0.181 -0.318 0.386
sum -15.521 -17.134 12.039 26.066
Atomic orbital electron populations
1.23054 0.78309 1.03818 1.01531 1.86061 1.21443 1.27027 1.88676
1.18618 0.91421 0.84109 0.95136 1.20965 0.99928 0.91697 1.12850
1.20970 0.92683 0.97576 0.96581 1.16740 0.89740 0.84178 1.08687
1.41407 1.57163 1.16256 1.17844 1.17378 0.96507 0.95193 0.87316
1.20114 1.02823 0.99760 0.92238 1.19982 1.01946 0.96296 0.99030
1.18964 0.93479 0.93105 0.87316 1.83568 1.52681 1.45147 1.32049
1.20710 1.18251 1.02396 1.04513 0.87919 1.24421 0.94666 0.96204
0.98951 1.69667 1.24723 1.24210 1.34195 0.86189 0.77125 0.81430
0.82178 1.20088 1.21073 1.18445 1.21071 1.03441 1.02146 0.93325
1.20265 1.00092 0.96568 0.98786 1.19164 0.83237 0.92547 0.94164
1.86318 1.14422 1.31876 1.87518 1.23112 0.97272 0.85630 1.01099
1.20281 0.92613 0.97312 1.15444 0.88356 0.92593 0.92475 0.85291
0.84819 0.76425 0.87465 0.86699 0.91349 0.84862 0.87242 0.88047
0.92554 0.92830 0.84580
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.17 9.81 101.05 0.99 1.16 16
2 O -0.32 -3.24 10.50 -19.69 -0.21 -3.44 16
3 C 0.15 1.71 6.68 -39.24 -0.26 1.45 16
4 C -0.23 -2.38 9.03 -39.42 -0.36 -2.74 16
5 C -0.06 -0.65 9.96 -39.42 -0.39 -1.04 16
6 C 0.10 1.36 4.94 -83.46 -0.41 0.95 16
7 N -0.70 -9.92 5.26 -8.21 -0.04 -9.96 16
8 C 0.13 2.33 6.17 -83.70 -0.52 1.81 16
9 C -0.13 -2.38 8.64 -39.39 -0.34 -2.72 16
10 C -0.15 -3.20 9.98 -39.42 -0.39 -3.59 16
11 C 0.12 2.92 6.65 -39.08 -0.26 2.66 16
12 O -0.23 -6.21 8.58 0.00 0.00 -6.21 16
13 C -0.38 -11.07 9.94 30.87 0.31 -10.77 16
14 H 0.10 3.02 5.43 -52.49 -0.29 2.74 16
15 C 0.06 1.71 5.49 -17.52 -0.10 1.61 16
16 N -0.89 -26.35 13.96 55.48 0.77 -25.58 16
17 Si 0.90 22.36 28.62 -169.99 -4.86 17.50 16
18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
20 H -0.26 -6.46 7.11 56.52 0.40 -6.05 16
21 C -0.18 -3.99 9.16 -39.42 -0.36 -4.35 16
22 C -0.14 -2.52 9.89 -39.39 -0.39 -2.91 16
23 C 0.16 2.12 5.57 -39.08 -0.22 1.90 16
24 O -0.29 -4.12 9.41 -19.72 -0.19 -4.30 16
25 C 0.02 0.24 9.81 101.05 0.99 1.23 16
26 C -0.24 -2.81 8.97 -39.32 -0.35 -3.16 16
27 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16
28 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16
29 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16
30 H 0.13 0.98 6.28 -52.49 -0.33 0.65 16
31 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16
32 H 0.40 4.84 8.84 -40.82 -0.36 4.48 16
33 H 0.11 1.87 6.42 -52.49 -0.34 1.53 16
34 H 0.11 2.27 8.06 -52.48 -0.42 1.84 16
35 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16
36 H 0.13 3.08 5.64 -52.49 -0.30 2.79 16
37 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16
38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16
39 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16
40 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16
41 H 0.14 1.42 6.30 -52.49 -0.33 1.09 16
LS Contribution 346.67 15.07 5.22 5.22
Total: -1.00 -32.85 346.67 -6.14 -38.99
By element:
Atomic # 1 Polarization: 11.07 SS G_CDS: -4.78 Total: 6.29 kcal
Atomic # 6 Polarization: -16.44 SS G_CDS: -2.06 Total: -18.50 kcal
Atomic # 7 Polarization: -36.27 SS G_CDS: 0.73 Total: -35.54 kcal
Atomic # 8 Polarization: -13.56 SS G_CDS: -0.39 Total: -13.96 kcal
Atomic # 14 Polarization: 22.36 SS G_CDS: -4.86 Total: 17.50 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -32.85 -6.14 -38.99 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001212610092.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.303 kcal
(2) G-P(sol) polarization free energy of solvation -32.849 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.546 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.141 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.687 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds