Wall clock time and date at job start Tue Mar 31 2020 10:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35984 * 116.99741 * 2 1 4 4 C 1.38707 * 119.96225 * 0.02562 * 3 2 1 5 5 C 1.38196 * 120.10707 * 179.97438 * 4 3 2 6 6 C 1.38726 * 120.03264 * 359.71941 * 5 4 3 7 7 N 1.40176 * 120.04153 * 180.30168 * 6 5 4 8 8 C 1.39733 * 119.99800 * 246.82357 * 7 6 5 9 9 C 1.38994 * 120.01127 * 5.79913 * 8 7 6 10 10 C 1.37985 * 119.98818 * 179.74167 * 9 8 7 11 11 C 1.38915 * 120.00968 * 0.52358 * 10 9 8 12 12 O 1.35783 * 119.99049 * 179.70394 * 11 10 9 13 13 C 1.34812 * 117.00032 * 186.08293 * 12 11 10 14 14 H 1.07996 * 120.00081 * 354.88466 * 13 12 11 15 15 C 1.38612 * 120.00077 * 174.89022 * 13 12 11 16 16 N 1.31583 * 119.99980 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99926 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47208 * 89.99623 * 17 15 13 19 19 H 1.48502 * 109.47222 * 209.99866 * 17 15 13 20 20 H 1.48503 * 109.47190 * 330.00093 * 17 15 13 21 21 C 1.38918 * 120.01960 * 359.73139 * 11 10 9 22 22 C 1.37991 * 120.00856 * 0.02562 * 21 11 10 23 23 C 1.39317 * 119.92141 * 0.55515 * 6 5 4 24 24 O 1.35994 * 120.05935 * 179.72075 * 23 6 5 25 25 C 1.42899 * 117.00500 * 179.72701 * 24 23 6 26 26 C 1.38502 * 119.89312 * 359.44887 * 23 6 5 27 27 H 1.09005 * 109.46713 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47223 * 299.99406 * 1 2 3 29 29 H 1.08996 * 109.47535 * 60.00336 * 1 2 3 30 30 H 1.07993 * 119.94470 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.98843 * 180.02562 * 5 4 3 32 32 H 0.96995 * 119.99851 * 66.82879 * 7 6 5 33 33 H 1.08000 * 120.00307 * 359.96651 * 9 8 7 34 34 H 1.08006 * 119.99102 * 180.25010 * 10 9 8 35 35 H 0.97004 * 119.99863 * 179.97438 * 16 15 13 36 36 H 1.07994 * 119.99795 * 180.02562 * 21 11 10 37 37 H 1.07999 * 120.00037 * 179.97438 * 22 21 11 38 38 H 1.09003 * 109.46977 * 179.97438 * 25 24 23 39 39 H 1.09002 * 109.46679 * 59.99924 * 25 24 23 40 40 H 1.09000 * 109.47038 * 299.99743 * 25 24 23 41 41 H 1.07996 * 120.01837 * 180.25253 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2900 2.3744 0.0005 5 6 1.9142 3.6074 0.0011 6 6 3.2994 3.6843 0.0070 7 7 3.9327 4.9348 0.0139 8 6 4.6777 5.3468 -1.0942 9 6 4.6927 4.5727 -2.2485 10 6 5.4244 4.9827 -3.3443 11 6 6.1545 6.1632 -3.2901 12 8 6.8791 6.5631 -4.3665 13 6 7.6634 7.6480 -4.2075 14 1 7.6328 8.2057 -3.2831 15 6 8.5090 8.0479 -5.2304 16 7 9.2742 9.1071 -5.0754 17 14 8.5624 7.0830 -6.8290 18 1 7.5611 7.6372 -7.7754 19 1 9.9183 7.1878 -7.4255 20 1 8.2500 5.6569 -6.5572 21 6 6.1440 6.9344 -2.1347 22 6 5.4087 6.5278 -1.0401 23 6 4.0602 2.5173 0.0006 24 8 5.4182 2.5895 0.0006 25 6 6.1338 1.3526 0.0000 26 6 3.4314 1.2833 0.0000 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 0.2117 2.3161 0.0014 31 1 1.3235 4.5115 0.0019 32 1 3.8538 5.5141 0.7879 33 1 4.1290 3.6525 -2.2891 34 1 5.4328 4.3833 -4.2427 35 1 9.8662 9.3867 -5.7911 36 1 6.7115 7.8523 -2.0930 37 1 5.4009 7.1272 -0.1418 38 1 7.2053 1.5527 -0.0004 39 1 5.8709 0.7813 -0.8903 40 1 5.8710 0.7804 0.8897 41 1 4.0192 0.3773 -0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212610092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:34 Heat of formation + Delta-G solvation = -29.686778 kcal Electronic energy + Delta-G solvation = -25374.911275 eV Core-core repulsion = 21608.182624 eV Total energy + Delta-G solvation = -3766.728651 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.75406 -39.28629 -38.86368 -37.44259 -36.32793 -34.00124 -32.17873 -30.71084 -30.29336 -29.34207 -27.85135 -27.38847 -26.55264 -24.83884 -22.72273 -22.06826 -21.82980 -20.57649 -18.85933 -17.84325 -17.40227 -16.98230 -16.70934 -16.43308 -16.26161 -15.99509 -15.54997 -14.99843 -14.58633 -14.20074 -13.77896 -13.73231 -13.64600 -13.47780 -12.84607 -12.79596 -12.66255 -12.60799 -12.18816 -12.06830 -11.90303 -11.68318 -11.66217 -11.39170 -11.19265 -10.84864 -10.73492 -10.56654 -10.06662 -9.46652 -9.23871 -8.75401 -8.60088 -8.18348 -7.96543 -6.47698 -6.27845 -3.92158 1.17051 1.26786 2.19435 2.52223 2.93575 3.26719 3.30856 3.33309 3.49085 3.54277 3.78847 4.35104 4.58484 4.66369 4.80108 4.84446 4.86552 4.94196 5.05304 5.10214 5.11209 5.15712 5.25310 5.37022 5.44593 5.48149 5.60961 5.69303 5.77333 6.12609 6.18589 6.20147 6.24814 6.33996 6.52916 6.83821 6.89774 7.06473 7.07980 7.29315 7.39231 7.55585 7.86347 8.01926 8.12922 8.22636 9.08878 9.75480 10.80742 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022531 B = 0.002872 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.441419 B = 9747.489827 C = 9918.574549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.153 3.847 4 C -0.235 4.235 5 C -0.058 4.058 6 C 0.102 3.898 7 N -0.696 5.696 8 C 0.132 3.868 9 C -0.128 4.128 10 C -0.153 4.153 11 C 0.122 3.878 12 O -0.228 6.228 13 C -0.383 4.383 14 H 0.103 0.897 15 C 0.059 3.941 16 N -0.888 5.888 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.260 1.260 21 C -0.180 4.180 22 C -0.135 4.135 23 C 0.158 3.842 24 O -0.290 6.290 25 C 0.024 3.976 26 C -0.237 4.237 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.400 0.600 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.277 0.723 36 H 0.134 0.866 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.793 -16.864 12.772 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.107 3.893 4 C -0.254 4.254 5 C -0.078 4.078 6 C 0.007 3.993 7 N -0.327 5.327 8 C 0.036 3.964 9 C -0.149 4.149 10 C -0.173 4.173 11 C 0.071 3.929 12 O -0.134 6.134 13 C -0.459 4.459 14 H 0.121 0.879 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.184 1.184 21 C -0.200 4.200 22 C -0.157 4.157 23 C 0.109 3.891 24 O -0.201 6.201 25 C -0.071 4.071 26 C -0.256 4.256 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.236 0.764 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.087 0.913 36 H 0.151 0.849 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.398 -16.953 12.357 26.023 hybrid contribution -0.124 -0.181 -0.318 0.386 sum -15.521 -17.134 12.039 26.066 Atomic orbital electron populations 1.23054 0.78309 1.03818 1.01531 1.86061 1.21443 1.27027 1.88676 1.18618 0.91421 0.84109 0.95136 1.20965 0.99928 0.91697 1.12850 1.20970 0.92683 0.97576 0.96581 1.16740 0.89740 0.84178 1.08687 1.41407 1.57163 1.16256 1.17844 1.17378 0.96507 0.95193 0.87316 1.20114 1.02823 0.99760 0.92238 1.19982 1.01946 0.96296 0.99030 1.18964 0.93479 0.93105 0.87316 1.83568 1.52681 1.45147 1.32049 1.20710 1.18251 1.02396 1.04513 0.87919 1.24421 0.94666 0.96204 0.98951 1.69667 1.24723 1.24210 1.34195 0.86189 0.77125 0.81430 0.82178 1.20088 1.21073 1.18445 1.21071 1.03441 1.02146 0.93325 1.20265 1.00092 0.96568 0.98786 1.19164 0.83237 0.92547 0.94164 1.86318 1.14422 1.31876 1.87518 1.23112 0.97272 0.85630 1.01099 1.20281 0.92613 0.97312 1.15444 0.88356 0.92593 0.92475 0.85291 0.84819 0.76425 0.87465 0.86699 0.91349 0.84862 0.87242 0.88047 0.92554 0.92830 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.24 10.50 -19.69 -0.21 -3.44 16 3 C 0.15 1.71 6.68 -39.24 -0.26 1.45 16 4 C -0.23 -2.38 9.03 -39.42 -0.36 -2.74 16 5 C -0.06 -0.65 9.96 -39.42 -0.39 -1.04 16 6 C 0.10 1.36 4.94 -83.46 -0.41 0.95 16 7 N -0.70 -9.92 5.26 -8.21 -0.04 -9.96 16 8 C 0.13 2.33 6.17 -83.70 -0.52 1.81 16 9 C -0.13 -2.38 8.64 -39.39 -0.34 -2.72 16 10 C -0.15 -3.20 9.98 -39.42 -0.39 -3.59 16 11 C 0.12 2.92 6.65 -39.08 -0.26 2.66 16 12 O -0.23 -6.21 8.58 0.00 0.00 -6.21 16 13 C -0.38 -11.07 9.94 30.87 0.31 -10.77 16 14 H 0.10 3.02 5.43 -52.49 -0.29 2.74 16 15 C 0.06 1.71 5.49 -17.52 -0.10 1.61 16 16 N -0.89 -26.35 13.96 55.48 0.77 -25.58 16 17 Si 0.90 22.36 28.62 -169.99 -4.86 17.50 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.26 -6.46 7.11 56.52 0.40 -6.05 16 21 C -0.18 -3.99 9.16 -39.42 -0.36 -4.35 16 22 C -0.14 -2.52 9.89 -39.39 -0.39 -2.91 16 23 C 0.16 2.12 5.57 -39.08 -0.22 1.90 16 24 O -0.29 -4.12 9.41 -19.72 -0.19 -4.30 16 25 C 0.02 0.24 9.81 101.05 0.99 1.23 16 26 C -0.24 -2.81 8.97 -39.32 -0.35 -3.16 16 27 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 30 H 0.13 0.98 6.28 -52.49 -0.33 0.65 16 31 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.40 4.84 8.84 -40.82 -0.36 4.48 16 33 H 0.11 1.87 6.42 -52.49 -0.34 1.53 16 34 H 0.11 2.27 8.06 -52.48 -0.42 1.84 16 35 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.13 3.08 5.64 -52.49 -0.30 2.79 16 37 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 40 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 41 H 0.14 1.42 6.30 -52.49 -0.33 1.09 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -32.85 346.67 -6.14 -38.99 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.78 Total: 6.29 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -2.06 Total: -18.50 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.73 Total: -35.54 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.39 Total: -13.96 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.86 Total: 17.50 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.85 -6.14 -38.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212610092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.303 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds