Wall clock time and date at job start Tue Mar 31 2020 10:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35984 * 116.99741 * 2 1 4 4 C 1.38707 * 119.96225 * 0.02562 * 3 2 1 5 5 C 1.38196 * 120.10707 * 179.97438 * 4 3 2 6 6 C 1.38726 * 120.03264 * 359.71941 * 5 4 3 7 7 N 1.40176 * 120.04153 * 180.30168 * 6 5 4 8 8 C 1.39733 * 119.99800 * 246.82357 * 7 6 5 9 9 C 1.38994 * 120.01127 * 5.79913 * 8 7 6 10 10 C 1.37985 * 119.98818 * 179.74167 * 9 8 7 11 11 C 1.38915 * 120.00968 * 0.52358 * 10 9 8 12 12 O 1.35783 * 119.99049 * 179.70394 * 11 10 9 13 13 C 1.34812 * 117.00032 * 186.08293 * 12 11 10 14 14 H 1.07996 * 120.00081 * 354.88466 * 13 12 11 15 15 C 1.38612 * 120.00077 * 174.89022 * 13 12 11 16 16 N 1.31583 * 119.99980 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99926 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47208 * 89.99623 * 17 15 13 19 19 H 1.48502 * 109.47222 * 209.99866 * 17 15 13 20 20 H 1.48503 * 109.47190 * 330.00093 * 17 15 13 21 21 C 1.38918 * 120.01960 * 359.73139 * 11 10 9 22 22 C 1.37991 * 120.00856 * 0.02562 * 21 11 10 23 23 C 1.39317 * 119.92141 * 0.55515 * 6 5 4 24 24 O 1.35994 * 120.05935 * 179.72075 * 23 6 5 25 25 C 1.42899 * 117.00500 * 179.72701 * 24 23 6 26 26 C 1.38502 * 119.89312 * 359.44887 * 23 6 5 27 27 H 1.09005 * 109.46713 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47223 * 299.99406 * 1 2 3 29 29 H 1.08996 * 109.47535 * 60.00336 * 1 2 3 30 30 H 1.07993 * 119.94470 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.98843 * 180.02562 * 5 4 3 32 32 H 0.96995 * 119.99851 * 66.82879 * 7 6 5 33 33 H 1.08000 * 120.00307 * 359.96651 * 9 8 7 34 34 H 1.08006 * 119.99102 * 180.25010 * 10 9 8 35 35 H 0.97004 * 119.99863 * 179.97438 * 16 15 13 36 36 H 1.07994 * 119.99795 * 180.02562 * 21 11 10 37 37 H 1.07999 * 120.00037 * 179.97438 * 22 21 11 38 38 H 1.09003 * 109.46977 * 179.97438 * 25 24 23 39 39 H 1.09002 * 109.46679 * 59.99924 * 25 24 23 40 40 H 1.09000 * 109.47038 * 299.99743 * 25 24 23 41 41 H 1.07996 * 120.01837 * 180.25253 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2900 2.3744 0.0005 5 6 1.9142 3.6074 0.0011 6 6 3.2994 3.6843 0.0070 7 7 3.9327 4.9348 0.0139 8 6 4.6777 5.3468 -1.0942 9 6 4.6927 4.5727 -2.2485 10 6 5.4244 4.9827 -3.3443 11 6 6.1545 6.1632 -3.2901 12 8 6.8791 6.5631 -4.3665 13 6 7.6634 7.6480 -4.2075 14 1 7.6328 8.2057 -3.2831 15 6 8.5090 8.0479 -5.2304 16 7 9.2742 9.1071 -5.0754 17 14 8.5624 7.0830 -6.8290 18 1 7.5611 7.6372 -7.7754 19 1 9.9183 7.1878 -7.4255 20 1 8.2500 5.6569 -6.5572 21 6 6.1440 6.9344 -2.1347 22 6 5.4087 6.5278 -1.0401 23 6 4.0602 2.5173 0.0006 24 8 5.4182 2.5895 0.0006 25 6 6.1338 1.3526 0.0000 26 6 3.4314 1.2833 0.0000 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 0.2117 2.3161 0.0014 31 1 1.3235 4.5115 0.0019 32 1 3.8538 5.5141 0.7879 33 1 4.1290 3.6525 -2.2891 34 1 5.4328 4.3833 -4.2427 35 1 9.8662 9.3867 -5.7911 36 1 6.7115 7.8523 -2.0930 37 1 5.4009 7.1272 -0.1418 38 1 7.2053 1.5527 -0.0004 39 1 5.8709 0.7813 -0.8903 40 1 5.8710 0.7804 0.8897 41 1 4.0192 0.3773 -0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212610092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:33 Heat of formation + Delta-G solvation = -50.755782 kcal Electronic energy + Delta-G solvation = -25375.824896 eV Core-core repulsion = 21608.182624 eV Total energy + Delta-G solvation = -3767.642272 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68229 -40.73034 -39.91689 -38.85417 -37.50615 -35.30499 -34.26464 -31.88981 -31.56151 -30.47633 -29.01157 -28.08784 -27.72520 -26.66120 -24.01415 -23.18132 -23.04205 -22.02867 -19.86051 -19.56574 -19.09971 -18.14399 -17.84653 -17.63460 -17.16285 -16.79226 -16.42961 -16.36237 -15.74664 -15.59613 -15.49649 -15.37876 -15.04473 -14.45495 -14.36699 -14.13240 -13.95930 -13.66292 -13.56681 -13.40533 -13.12778 -13.06082 -12.71486 -12.50657 -12.39247 -12.31995 -11.96831 -11.92262 -11.55925 -11.21595 -11.05388 -10.49471 -9.79718 -9.60689 -8.98938 -8.42329 -7.98177 -6.10269 0.27449 0.37368 0.57308 0.90289 1.33830 1.38948 1.55028 2.21647 2.33615 2.39921 2.59957 2.74014 2.86062 3.15926 3.31399 3.82450 4.08771 4.11184 4.12955 4.15934 4.21631 4.37368 4.42734 4.45000 4.53159 4.55797 4.58227 4.66343 4.73172 4.80080 4.86049 4.91948 5.21473 5.25187 5.29997 5.35148 5.49764 5.51860 5.64266 5.84529 5.86208 6.14782 6.30149 6.40262 6.70450 6.93421 7.00849 7.73269 8.69963 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022531 B = 0.002872 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.441419 B = 9747.489827 C = 9918.574549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.153 3.847 4 C -0.230 4.230 5 C -0.051 4.051 6 C 0.069 3.931 7 N -0.683 5.683 8 C 0.163 3.837 9 C -0.128 4.128 10 C -0.146 4.146 11 C 0.075 3.925 12 O -0.254 6.254 13 C -0.390 4.390 14 H 0.080 0.920 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.970 3.030 18 H -0.267 1.267 19 H -0.269 1.269 20 H -0.264 1.264 21 C -0.188 4.188 22 C -0.140 4.140 23 C 0.146 3.854 24 O -0.320 6.320 25 C 0.018 3.982 26 C -0.245 4.245 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.412 0.588 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.282 0.718 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.552 -19.334 13.703 30.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.107 3.893 4 C -0.249 4.249 5 C -0.070 4.070 6 C -0.025 4.025 7 N -0.313 5.313 8 C 0.064 3.936 9 C -0.150 4.150 10 C -0.166 4.166 11 C 0.027 3.973 12 O -0.162 6.162 13 C -0.467 4.467 14 H 0.097 0.903 15 C -0.192 4.192 16 N -0.572 5.572 17 Si 0.793 3.207 18 H -0.192 1.192 19 H -0.194 1.194 20 H -0.189 1.189 21 C -0.207 4.207 22 C -0.162 4.162 23 C 0.098 3.902 24 O -0.232 6.232 25 C -0.076 4.076 26 C -0.265 4.265 27 H 0.136 0.864 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.176 0.824 31 H 0.169 0.831 32 H 0.250 0.750 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.157 0.843 38 H 0.125 0.875 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.216 -19.464 13.354 29.816 hybrid contribution 0.428 0.335 -0.284 0.613 sum -17.788 -19.129 13.071 29.209 Atomic orbital electron populations 1.23386 0.76122 1.05644 1.02567 1.86059 1.23716 1.26557 1.88295 1.18795 0.91418 0.84972 0.94088 1.21265 1.01369 0.90818 1.11440 1.21167 0.91830 0.98804 0.95245 1.16995 0.90660 0.83444 1.11406 1.41358 1.55992 1.16976 1.16988 1.17478 0.94454 0.93766 0.87886 1.20256 1.02524 1.00413 0.91774 1.20180 1.01082 0.95161 1.00154 1.19386 0.95247 0.95035 0.87638 1.83499 1.54023 1.44979 1.33738 1.20687 1.18934 1.03057 1.04009 0.90279 1.25233 0.94391 0.97279 1.02307 1.69752 1.26020 1.25867 1.35605 0.85220 0.77903 0.79507 0.78097 1.19192 1.19435 1.18868 1.21053 1.03991 1.01437 0.94241 1.20452 0.99586 0.97422 0.98716 1.19275 0.83085 0.93121 0.94764 1.86251 1.15116 1.34008 1.87850 1.23302 0.97273 0.84784 1.02265 1.20416 0.93354 0.97193 1.15551 0.86380 0.91257 0.91612 0.82447 0.83050 0.75043 0.85734 0.85808 0.90857 0.87019 0.84329 0.87533 0.91946 0.91078 0.83713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.71 10.50 -93.37 -0.98 -6.69 16 3 C 0.15 2.96 6.68 22.49 0.15 3.11 16 4 C -0.23 -3.78 9.03 22.37 0.20 -3.58 16 5 C -0.05 -0.95 9.96 22.38 0.22 -0.73 16 6 C 0.07 1.67 4.94 38.18 0.19 1.86 16 7 N -0.68 -17.73 5.26 -179.89 -0.95 -18.67 16 8 C 0.16 5.45 6.17 38.24 0.24 5.69 16 9 C -0.13 -4.57 8.64 22.39 0.19 -4.37 16 10 C -0.15 -6.10 9.98 22.37 0.22 -5.88 16 11 C 0.08 3.71 6.65 22.60 0.15 3.86 16 12 O -0.25 -14.37 8.58 -22.93 -0.20 -14.56 16 13 C -0.39 -23.75 9.94 67.91 0.68 -23.08 16 14 H 0.08 5.02 5.43 -2.91 -0.02 5.00 16 15 C 0.00 0.29 5.49 84.82 0.47 0.76 16 16 N -0.93 -57.19 13.96 21.61 0.30 -56.88 16 17 Si 0.97 47.14 28.62 68.60 1.96 49.10 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.26 -12.85 7.11 99.48 0.71 -12.15 16 21 C -0.19 -8.58 9.16 22.37 0.20 -8.38 16 22 C -0.14 -5.11 9.89 22.39 0.22 -4.89 16 23 C 0.15 3.62 5.57 22.59 0.13 3.74 16 24 O -0.32 -8.63 9.41 -93.48 -0.88 -9.51 16 25 C 0.02 0.34 9.81 113.37 1.11 1.46 16 26 C -0.25 -5.27 8.97 22.44 0.20 -5.06 16 27 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.07 0.41 7.66 -2.39 -0.02 0.40 16 29 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 30 H 0.16 1.64 6.28 -2.91 -0.02 1.63 16 31 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.41 8.80 8.84 -92.71 -0.82 7.98 16 33 H 0.12 4.06 6.42 -2.91 -0.02 4.04 16 34 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 35 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 36 H 0.11 5.54 5.64 -2.91 -0.02 5.53 16 37 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.07 7.66 -2.39 -0.02 1.05 16 40 H 0.07 1.05 7.66 -2.39 -0.02 1.03 16 41 H 0.15 2.72 6.30 -2.91 -0.02 2.71 16 Total: -1.00 -73.57 346.67 5.21 -68.36 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.26 Total: 23.08 kcal Atomic # 6 Polarization: -39.92 SS G_CDS: 5.69 Total: -34.23 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -0.64 Total: -75.56 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -2.06 Total: -30.76 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.96 Total: 49.10 kcal Total: -73.57 5.21 -68.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212610092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.609 kcal (2) G-P(sol) polarization free energy of solvation -73.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds