Wall clock time and date at job start Tue Mar 31 2020 10:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35995 * 116.99751 * 2 1 4 4 C 1.38508 * 120.08109 * 359.72407 * 3 2 1 5 5 C 1.38286 * 120.01477 * 179.74497 * 4 3 2 6 6 C 1.38270 * 120.18906 * 0.54992 * 5 4 3 7 7 C 1.50700 * 119.91690 * 179.72192 * 6 5 4 8 8 O 1.42910 * 109.46987 * 269.98003 * 7 6 5 9 9 C 1.38197 * 120.16562 * 359.70464 * 6 5 4 10 10 C 1.38768 * 119.97826 * 0.02562 * 9 6 5 11 11 N 1.39942 * 120.09641 * 180.02562 * 10 9 6 12 12 C 1.39757 * 119.99815 * 246.75637 * 11 10 9 13 13 C 1.38983 * 120.00574 * 5.75303 * 12 11 10 14 14 C 1.37992 * 119.98454 * 179.74259 * 13 12 11 15 15 C 1.38911 * 120.01274 * 0.53114 * 14 13 12 16 16 O 1.35786 * 119.99511 * 179.69983 * 15 14 13 17 17 C 1.34816 * 116.99861 * 186.06305 * 16 15 14 18 18 H 1.07992 * 120.00196 * 354.89256 * 17 16 15 19 19 C 1.38614 * 119.99763 * 174.89384 * 17 16 15 20 20 N 1.31586 * 120.00137 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99964 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47107 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46868 * 119.99864 * 21 19 17 24 24 H 1.48498 * 109.46710 * 239.99914 * 21 19 17 25 25 C 1.38919 * 120.01359 * 359.72299 * 15 14 13 26 26 C 1.37993 * 120.00961 * 0.02562 * 25 15 14 27 27 H 1.08994 * 109.47598 * 299.99938 * 1 2 3 28 28 H 1.08997 * 109.47258 * 60.00364 * 1 2 3 29 29 H 1.09011 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.07993 * 119.99303 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.90761 * 180.25124 * 5 4 3 32 32 H 1.08996 * 109.47585 * 29.97898 * 7 6 5 33 33 H 1.09001 * 109.46932 * 149.98440 * 7 6 5 34 34 H 0.96696 * 113.99514 * 180.02562 * 8 7 6 35 35 H 1.08002 * 120.01500 * 180.02562 * 9 6 5 36 36 H 0.97000 * 119.99977 * 66.74974 * 11 10 9 37 37 H 1.07995 * 120.00636 * 359.97438 * 13 12 11 38 38 H 1.08008 * 119.99312 * 180.25190 * 14 13 12 39 39 H 0.96996 * 120.00547 * 180.02562 * 20 19 17 40 40 H 1.08000 * 119.99429 * 180.02562 * 25 15 14 41 41 H 1.07997 * 120.00598 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2936 2.3744 -0.0058 5 6 1.9227 3.6058 -0.0004 6 6 3.3034 3.6813 -0.0008 7 6 3.9826 5.0265 -0.0013 8 8 4.1974 5.4512 -1.3488 9 6 4.0619 2.5261 -0.0004 10 6 3.4378 1.2867 -0.0001 11 7 4.2036 0.1154 0.0009 12 6 4.1867 -0.7314 -1.1108 13 6 3.5062 -0.3534 -2.2621 14 6 3.4942 -1.1875 -3.3614 15 6 4.1530 -2.4095 -3.3135 16 8 4.1359 -3.2327 -4.3933 17 6 4.6854 -4.4542 -4.2404 18 1 5.1858 -4.7097 -3.3182 19 6 4.6080 -5.3824 -5.2670 20 7 3.9978 -5.0713 -6.3906 21 14 5.3687 -7.0752 -5.0550 22 1 5.9902 -7.1736 -3.7099 23 1 4.3144 -8.1121 -5.1908 24 1 6.4067 -7.2853 -6.0960 25 6 4.8288 -2.7899 -2.1610 26 6 4.8456 -1.9542 -1.0631 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0278 -0.0005 30 1 0.2151 2.3192 -0.0099 31 1 1.3340 4.5114 -0.0008 32 1 3.3520 5.7522 0.5121 33 1 4.9408 4.9499 0.5125 34 1 4.6322 6.3115 -1.4255 35 1 5.1402 2.5879 -0.0002 36 1 4.7461 -0.1087 0.7732 37 1 2.9900 0.5945 -2.2978 38 1 2.9688 -0.8920 -4.2576 39 1 3.9433 -5.7209 -7.1089 40 1 5.3412 -3.7399 -2.1242 41 1 5.3707 -2.2501 -0.1670 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212610093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:06 Heat of formation + Delta-G solvation = -45.738060 kcal Electronic energy + Delta-G solvation = -25300.509022 eV Core-core repulsion = 21533.084335 eV Total energy + Delta-G solvation = -3767.424687 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.48900 -38.83803 -38.03167 -37.09726 -36.23760 -34.29401 -32.05819 -30.99707 -30.33289 -29.68272 -27.73076 -26.92580 -25.41826 -25.07278 -22.73617 -21.73154 -21.46912 -20.38152 -18.19297 -17.78997 -17.64482 -17.11366 -16.70136 -16.42489 -15.97080 -15.55967 -14.82292 -14.66597 -14.40569 -14.21958 -13.88882 -13.71170 -13.48513 -13.37480 -13.08640 -12.73589 -12.46808 -12.37886 -12.12451 -11.84090 -11.57841 -11.44407 -11.29086 -11.08581 -10.99485 -10.96121 -10.51811 -10.32867 -10.30595 -9.52971 -9.17598 -8.88180 -8.49677 -8.09209 -8.03572 -6.38678 -6.29155 -3.86321 1.21611 1.24830 2.28968 2.62522 3.20324 3.21542 3.26892 3.29153 3.47465 3.80280 4.08848 4.32115 4.65626 4.75054 4.80555 4.89329 5.00702 5.09625 5.11841 5.14479 5.23734 5.32390 5.48698 5.48797 5.55470 5.68185 5.74972 5.85408 6.11792 6.16756 6.28034 6.33553 6.43800 6.54263 6.69439 6.91952 6.99082 7.20422 7.31826 7.38538 7.40367 7.51918 7.70808 8.09853 8.15861 8.21933 9.16837 9.91931 10.89689 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.002896 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.947291 B = 9664.646797 C =10084.102978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.294 6.294 3 C 0.125 3.875 4 C -0.206 4.206 5 C -0.072 4.072 6 C -0.125 4.125 7 C 0.124 3.876 8 O -0.566 6.566 9 C -0.076 4.076 10 C 0.137 3.863 11 N -0.699 5.699 12 C 0.122 3.878 13 C -0.121 4.121 14 C -0.154 4.154 15 C 0.120 3.880 16 O -0.188 6.188 17 C -0.385 4.385 18 H 0.089 0.911 19 C 0.035 3.965 20 N -0.869 5.869 21 Si 0.938 3.062 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.278 1.278 25 C -0.195 4.195 26 C -0.132 4.132 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.377 0.623 35 H 0.130 0.870 36 H 0.400 0.600 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.266 0.734 40 H 0.128 0.872 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.449 17.850 16.370 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.206 6.206 3 C 0.077 3.923 4 C -0.225 4.225 5 C -0.090 4.090 6 C -0.126 4.126 7 C 0.047 3.953 8 O -0.372 6.372 9 C -0.097 4.097 10 C 0.041 3.959 11 N -0.330 5.330 12 C 0.026 3.974 13 C -0.143 4.143 14 C -0.174 4.174 15 C 0.068 3.932 16 O -0.093 6.093 17 C -0.462 4.462 18 H 0.106 0.894 19 C -0.167 4.167 20 N -0.506 5.506 21 Si 0.763 3.237 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.203 1.203 25 C -0.215 4.215 26 C -0.154 4.154 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.224 0.776 35 H 0.148 0.852 36 H 0.235 0.765 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.076 0.924 40 H 0.146 0.854 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.881 17.033 15.712 23.496 hybrid contribution 0.520 -0.285 0.587 0.835 sum -3.361 16.748 16.299 23.610 Atomic orbital electron populations 1.23074 0.78933 1.04104 1.00847 1.86293 1.20694 1.25830 1.87771 1.19566 0.91983 0.84785 0.96013 1.21120 1.00013 0.91942 1.09438 1.20736 0.93637 0.96956 0.97693 1.19301 0.93421 0.93809 1.06074 1.20879 0.98220 0.92506 0.83730 1.86633 1.83147 1.40969 1.26443 1.21069 1.00023 0.90257 0.98333 1.16774 0.86753 0.87203 1.05152 1.41388 1.51840 1.21810 1.17920 1.17300 1.01638 0.91196 0.87256 1.20133 1.02505 0.99452 0.92223 1.19999 1.04373 0.94071 0.98931 1.19239 0.94786 0.91493 0.87718 1.83986 1.71028 1.24228 1.30070 1.21289 1.34700 0.87513 1.02704 0.89377 1.25217 0.97375 0.99257 0.94890 1.70062 1.40808 1.35203 1.04502 0.85698 0.78581 0.80875 0.78548 1.19250 1.20338 1.20338 1.20951 1.05365 1.01447 0.93743 1.20201 1.03395 0.93196 0.98588 0.93046 0.92682 0.88187 0.85240 0.85924 0.93010 0.92956 0.77586 0.85193 0.76469 0.87610 0.86616 0.92383 0.85449 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.29 -4.35 9.43 -19.73 -0.19 -4.54 16 3 C 0.13 1.75 5.58 -39.07 -0.22 1.53 16 4 C -0.21 -2.37 9.04 -39.46 -0.36 -2.73 16 5 C -0.07 -0.77 9.69 -39.55 -0.38 -1.15 16 6 C -0.13 -1.40 5.51 -104.62 -0.58 -1.98 16 7 C 0.12 1.05 7.17 36.01 0.26 1.31 16 8 O -0.57 -5.56 13.64 -35.23 -0.48 -6.04 16 9 C -0.08 -0.96 9.62 -39.40 -0.38 -1.34 16 10 C 0.14 1.95 4.93 -83.55 -0.41 1.54 16 11 N -0.70 -10.59 5.25 -8.25 -0.04 -10.64 16 12 C 0.12 2.27 6.18 -83.69 -0.52 1.76 16 13 C -0.12 -2.45 8.65 -39.40 -0.34 -2.79 16 14 C -0.15 -3.51 9.98 -39.42 -0.39 -3.91 16 15 C 0.12 3.05 6.65 -39.08 -0.26 2.79 16 16 O -0.19 -5.59 9.76 -0.02 0.00 -5.59 16 17 C -0.39 -11.15 9.48 30.87 0.29 -10.86 16 18 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 19 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 20 N -0.87 -26.38 13.67 55.48 0.76 -25.62 16 21 Si 0.94 21.24 29.55 -169.99 -5.02 16.21 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.20 -4.43 9.16 -39.42 -0.36 -4.79 16 26 C -0.13 -2.55 9.89 -39.40 -0.39 -2.94 16 27 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 28 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 29 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 30 H 0.13 1.20 6.30 -52.49 -0.33 0.87 16 31 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.05 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 34 H 0.38 1.74 9.12 45.56 0.42 2.16 16 35 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 36 H 0.40 5.11 8.84 -40.82 -0.36 4.75 16 37 H 0.11 2.04 6.43 -52.49 -0.34 1.70 16 38 H 0.12 2.57 8.06 -52.48 -0.42 2.14 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 351.16 15.07 5.29 5.29 Total: -1.00 -35.46 351.16 -6.89 -42.35 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -4.07 Total: 9.96 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -3.14 Total: -21.38 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.72 Total: -36.25 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.67 Total: -16.18 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.46 -6.89 -42.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212610093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.393 kcal (2) G-P(sol) polarization free energy of solvation -35.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds