Wall clock time and date at job start Tue Mar 31 2020 10:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35995 * 116.99751 * 2 1 4 4 C 1.38508 * 120.08109 * 359.72407 * 3 2 1 5 5 C 1.38286 * 120.01477 * 179.74497 * 4 3 2 6 6 C 1.38270 * 120.18906 * 0.54992 * 5 4 3 7 7 C 1.50700 * 119.91690 * 179.72192 * 6 5 4 8 8 O 1.42910 * 109.46987 * 269.98003 * 7 6 5 9 9 C 1.38197 * 120.16562 * 359.70464 * 6 5 4 10 10 C 1.38768 * 119.97826 * 0.02562 * 9 6 5 11 11 N 1.39942 * 120.09641 * 180.02562 * 10 9 6 12 12 C 1.39757 * 119.99815 * 246.75637 * 11 10 9 13 13 C 1.38983 * 120.00574 * 5.75303 * 12 11 10 14 14 C 1.37992 * 119.98454 * 179.74259 * 13 12 11 15 15 C 1.38911 * 120.01274 * 0.53114 * 14 13 12 16 16 O 1.35786 * 119.99511 * 179.69983 * 15 14 13 17 17 C 1.34816 * 116.99861 * 186.06305 * 16 15 14 18 18 H 1.07992 * 120.00196 * 354.89256 * 17 16 15 19 19 C 1.38614 * 119.99763 * 174.89384 * 17 16 15 20 20 N 1.31586 * 120.00137 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99964 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47107 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46868 * 119.99864 * 21 19 17 24 24 H 1.48498 * 109.46710 * 239.99914 * 21 19 17 25 25 C 1.38919 * 120.01359 * 359.72299 * 15 14 13 26 26 C 1.37993 * 120.00961 * 0.02562 * 25 15 14 27 27 H 1.08994 * 109.47598 * 299.99938 * 1 2 3 28 28 H 1.08997 * 109.47258 * 60.00364 * 1 2 3 29 29 H 1.09011 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.07993 * 119.99303 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.90761 * 180.25124 * 5 4 3 32 32 H 1.08996 * 109.47585 * 29.97898 * 7 6 5 33 33 H 1.09001 * 109.46932 * 149.98440 * 7 6 5 34 34 H 0.96696 * 113.99514 * 180.02562 * 8 7 6 35 35 H 1.08002 * 120.01500 * 180.02562 * 9 6 5 36 36 H 0.97000 * 119.99977 * 66.74974 * 11 10 9 37 37 H 1.07995 * 120.00636 * 359.97438 * 13 12 11 38 38 H 1.08008 * 119.99312 * 180.25190 * 14 13 12 39 39 H 0.96996 * 120.00547 * 180.02562 * 20 19 17 40 40 H 1.08000 * 119.99429 * 180.02562 * 25 15 14 41 41 H 1.07997 * 120.00598 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2936 2.3744 -0.0058 5 6 1.9227 3.6058 -0.0004 6 6 3.3034 3.6813 -0.0008 7 6 3.9826 5.0265 -0.0013 8 8 4.1974 5.4512 -1.3488 9 6 4.0619 2.5261 -0.0004 10 6 3.4378 1.2867 -0.0001 11 7 4.2036 0.1154 0.0009 12 6 4.1867 -0.7314 -1.1108 13 6 3.5062 -0.3534 -2.2621 14 6 3.4942 -1.1875 -3.3614 15 6 4.1530 -2.4095 -3.3135 16 8 4.1359 -3.2327 -4.3933 17 6 4.6854 -4.4542 -4.2404 18 1 5.1858 -4.7097 -3.3182 19 6 4.6080 -5.3824 -5.2670 20 7 3.9978 -5.0713 -6.3906 21 14 5.3687 -7.0752 -5.0550 22 1 5.9902 -7.1736 -3.7099 23 1 4.3144 -8.1121 -5.1908 24 1 6.4067 -7.2853 -6.0960 25 6 4.8288 -2.7899 -2.1610 26 6 4.8456 -1.9542 -1.0631 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0278 -0.0005 30 1 0.2151 2.3192 -0.0099 31 1 1.3340 4.5114 -0.0008 32 1 3.3520 5.7522 0.5121 33 1 4.9408 4.9499 0.5125 34 1 4.6322 6.3115 -1.4255 35 1 5.1402 2.5879 -0.0002 36 1 4.7461 -0.1087 0.7732 37 1 2.9900 0.5945 -2.2978 38 1 2.9688 -0.8920 -4.2576 39 1 3.9433 -5.7209 -7.1089 40 1 5.3412 -3.7399 -2.1242 41 1 5.3707 -2.2501 -0.1670 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212610093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:05 Heat of formation + Delta-G solvation = -71.624421 kcal Electronic energy + Delta-G solvation = -25301.631539 eV Core-core repulsion = 21533.084335 eV Total energy + Delta-G solvation = -3768.547204 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.53102 -40.55658 -38.93824 -38.62569 -37.17707 -35.68018 -34.10550 -31.96129 -31.81996 -31.02260 -28.77361 -28.31147 -27.06861 -26.17840 -24.08779 -23.20942 -22.70499 -21.67637 -19.78418 -19.14158 -18.77368 -18.31556 -18.07439 -17.49704 -17.24446 -16.56654 -16.24914 -15.97014 -15.53502 -15.44308 -15.39325 -15.22367 -14.90532 -14.53409 -14.42872 -14.11701 -13.84941 -13.57584 -13.46683 -13.28460 -13.10349 -12.87092 -12.72350 -12.32897 -12.23448 -12.07212 -11.99110 -11.84849 -11.13565 -11.08661 -10.90873 -10.47537 -9.81869 -9.78358 -9.09928 -8.39433 -7.99914 -6.03829 0.25649 0.33707 0.56916 0.92100 1.37180 1.46217 1.55742 2.22566 2.36442 2.48136 2.71716 2.90889 3.23888 3.63622 3.67852 3.86577 3.99417 4.09135 4.14826 4.18211 4.26772 4.36853 4.37876 4.39627 4.53615 4.59809 4.66399 4.70837 4.71835 4.84050 4.98424 5.11371 5.19909 5.25617 5.29359 5.46004 5.52079 5.58292 5.72207 5.76740 5.98217 6.10540 6.36558 6.67868 6.98115 6.98758 7.06038 7.91951 8.85340 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.002896 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.947291 B = 9664.646797 C =10084.102978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.326 6.326 3 C 0.108 3.892 4 C -0.206 4.206 5 C -0.067 4.067 6 C -0.132 4.132 7 C 0.123 3.877 8 O -0.594 6.594 9 C -0.079 4.079 10 C 0.103 3.897 11 N -0.686 5.686 12 C 0.153 3.847 13 C -0.123 4.123 14 C -0.160 4.160 15 C 0.074 3.926 16 O -0.241 6.241 17 C -0.406 4.406 18 H 0.100 0.900 19 C -0.029 4.029 20 N -0.927 5.927 21 Si 1.018 2.982 22 H -0.251 1.251 23 H -0.270 1.270 24 H -0.270 1.270 25 C -0.194 4.194 26 C -0.133 4.133 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.137 0.863 36 H 0.413 0.587 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.270 0.730 40 H 0.124 0.876 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 19.604 19.289 27.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.239 6.239 3 C 0.060 3.940 4 C -0.225 4.225 5 C -0.085 4.085 6 C -0.133 4.133 7 C 0.046 3.954 8 O -0.403 6.403 9 C -0.099 4.099 10 C 0.009 3.991 11 N -0.317 5.317 12 C 0.054 3.946 13 C -0.145 4.145 14 C -0.180 4.180 15 C 0.024 3.976 16 O -0.149 6.149 17 C -0.482 4.482 18 H 0.117 0.883 19 C -0.225 4.225 20 N -0.567 5.567 21 Si 0.838 3.162 22 H -0.174 1.174 23 H -0.195 1.195 24 H -0.195 1.195 25 C -0.214 4.214 26 C -0.154 4.154 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.121 0.879 30 H 0.169 0.831 31 H 0.169 0.831 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.249 0.751 35 H 0.155 0.845 36 H 0.251 0.749 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.079 0.921 40 H 0.142 0.858 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.606 18.878 18.713 26.825 hybrid contribution 0.342 -0.432 -0.067 0.555 sum -3.264 18.446 18.646 26.431 Atomic orbital electron populations 1.23284 0.77141 1.04885 1.02259 1.86220 1.22787 1.26781 1.88137 1.19742 0.92105 0.85353 0.96839 1.21412 1.01132 0.91480 1.08501 1.21146 0.93845 0.97699 0.95846 1.19721 0.93906 0.94779 1.04892 1.20982 0.99315 0.91549 0.83581 1.86557 1.83709 1.42798 1.27254 1.21213 1.00617 0.90137 0.97940 1.17034 0.87119 0.87168 1.07798 1.41320 1.51738 1.21584 1.17047 1.17418 0.98592 0.90948 0.87619 1.20171 1.02994 0.99404 0.91949 1.20120 1.04240 0.93903 0.99744 1.19652 0.97399 0.92225 0.88328 1.83939 1.73236 1.25209 1.32487 1.21823 1.34976 0.87931 1.03511 0.88252 1.26556 0.97831 1.03863 0.94223 1.70218 1.43443 1.37165 1.05850 0.84533 0.77768 0.74550 0.79362 1.17393 1.19510 1.19485 1.21044 1.04645 1.01848 0.93830 1.20488 1.03380 0.92754 0.98812 0.90650 0.92146 0.87892 0.83127 0.83130 0.90449 0.91537 0.75134 0.84482 0.74943 0.86574 0.87338 0.92128 0.85786 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.48 16 2 O -0.33 -9.26 9.43 -93.50 -0.88 -10.14 16 3 C 0.11 2.81 5.58 22.60 0.13 2.94 16 4 C -0.21 -4.19 9.04 22.35 0.20 -3.98 16 5 C -0.07 -1.20 9.69 22.29 0.22 -0.99 16 6 C -0.13 -2.55 5.51 -19.87 -0.11 -2.66 16 7 C 0.12 1.65 7.17 71.24 0.51 2.16 16 8 O -0.59 -9.94 13.64 -148.98 -2.03 -11.97 16 9 C -0.08 -1.79 9.62 22.39 0.22 -1.58 16 10 C 0.10 2.75 4.93 38.24 0.19 2.94 16 11 N -0.69 -19.38 5.25 -180.02 -0.95 -20.33 16 12 C 0.15 5.50 6.18 38.23 0.24 5.73 16 13 C -0.12 -4.96 8.65 22.39 0.19 -4.77 16 14 C -0.16 -7.62 9.98 22.37 0.22 -7.40 16 15 C 0.07 3.91 6.65 22.59 0.15 4.06 16 16 O -0.24 -15.23 9.76 -23.00 -0.22 -15.46 16 17 C -0.41 -24.57 9.48 67.91 0.64 -23.92 16 18 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 19 C -0.03 -1.69 5.49 84.82 0.47 -1.22 16 20 N -0.93 -59.04 13.67 21.61 0.30 -58.75 16 21 Si 1.02 44.44 29.55 68.60 2.03 46.47 16 22 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 C -0.19 -8.92 9.16 22.37 0.20 -8.72 16 26 C -0.13 -4.93 9.89 22.39 0.22 -4.71 16 27 H 0.08 1.06 7.67 -2.39 -0.02 1.04 16 28 H 0.06 1.08 7.65 -2.39 -0.02 1.06 16 29 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.15 2.31 6.30 -2.91 -0.02 2.29 16 31 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 33 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 34 H 0.40 2.55 9.12 -74.06 -0.68 1.87 16 35 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.41 9.45 8.84 -92.71 -0.82 8.63 16 37 H 0.12 4.43 6.43 -2.91 -0.02 4.41 16 38 H 0.11 5.15 8.06 -2.91 -0.02 5.12 16 39 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 40 H 0.12 5.69 5.64 -2.91 -0.02 5.68 16 41 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -81.47 351.16 2.64 -78.83 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: -0.40 Total: 31.99 kcal Atomic # 6 Polarization: -45.45 SS G_CDS: 4.80 Total: -40.64 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -0.65 Total: -79.07 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -3.14 Total: -37.57 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -81.47 2.64 -78.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212610093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.204 kcal (2) G-P(sol) polarization free energy of solvation -81.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds