Wall clock time and date at job start Tue Mar 31 2020 10:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36006 * 116.99487 * 2 1 4 4 C 1.38508 * 120.08207 * 359.97438 * 3 2 1 5 5 C 1.38281 * 120.02030 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.90584 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.47196 * 269.98272 * 6 5 4 8 8 C 1.38264 * 120.18777 * 359.96387 * 5 4 3 9 9 C 1.38207 * 120.16390 * 0.02562 * 8 5 4 10 10 C 1.38763 * 119.97974 * 0.27256 * 9 8 5 11 11 N 1.39935 * 120.09561 * 179.70156 * 10 9 8 12 12 C 1.39750 * 120.00337 * 246.70428 * 11 10 9 13 13 C 1.38981 * 120.00903 * 5.71754 * 12 11 10 14 14 C 1.37993 * 119.99364 * 179.80730 * 13 12 11 15 15 C 1.38915 * 120.00714 * 0.45281 * 14 13 12 16 16 O 1.35784 * 119.99027 * 179.76517 * 15 14 13 17 17 C 1.34813 * 116.99577 * 186.04661 * 16 15 14 18 18 H 1.07996 * 120.00356 * 354.88952 * 17 16 15 19 19 C 1.38616 * 119.99701 * 174.89107 * 17 16 15 20 20 N 1.31588 * 120.00047 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00015 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47176 * 90.00096 * 21 19 17 23 23 H 1.48504 * 109.47105 * 209.99948 * 21 19 17 24 24 H 1.48497 * 109.46971 * 329.99907 * 21 19 17 25 25 C 1.38911 * 120.01462 * 359.77896 * 15 14 13 26 26 C 1.37989 * 120.01157 * 0.02562 * 25 15 14 27 27 H 1.08997 * 109.46968 * 60.00377 * 1 2 3 28 28 H 1.09009 * 109.46378 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47230 * 299.99875 * 1 2 3 30 30 H 1.08003 * 119.98739 * 0.02562 * 4 3 2 31 31 H 1.08995 * 109.46761 * 29.98609 * 6 5 4 32 32 H 1.09000 * 109.46691 * 149.98732 * 6 5 4 33 33 H 0.96699 * 113.99753 * 179.97438 * 7 6 5 34 34 H 1.08004 * 119.92294 * 180.02562 * 8 5 4 35 35 H 1.08002 * 120.01224 * 180.02562 * 9 8 5 36 36 H 0.96999 * 119.99762 * 66.70613 * 11 10 9 37 37 H 1.08007 * 120.00596 * 0.02562 * 13 12 11 38 38 H 1.08000 * 119.99745 * 180.22893 * 14 13 12 39 39 H 0.96995 * 120.00429 * 179.97438 * 20 19 17 40 40 H 1.08002 * 119.99322 * 179.97438 * 25 15 14 41 41 H 1.08001 * 120.00832 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2936 2.3745 -0.0005 5 6 1.9226 3.6060 -0.0011 6 6 1.1010 4.8694 -0.0022 7 8 0.8422 5.2681 -1.3499 8 6 3.3032 3.6815 -0.0003 9 6 4.0618 2.5263 0.0004 10 6 3.4378 1.2869 -0.0053 11 7 4.2036 0.1157 -0.0108 12 6 4.1854 -0.7259 -1.1263 13 6 3.5026 -0.3431 -2.2748 14 6 3.4881 -1.1726 -3.3775 15 6 4.1480 -2.3943 -3.3365 16 8 4.1295 -3.2124 -4.4200 17 6 4.6805 -4.4341 -4.2740 18 1 5.1832 -4.6933 -3.3539 19 6 4.6019 -5.3575 -5.3047 20 7 5.1402 -6.5498 -5.1624 21 14 3.7319 -4.9095 -6.8958 22 1 4.7071 -4.3089 -7.8411 23 1 3.1451 -6.1323 -7.5005 24 1 2.6518 -3.9310 -6.6108 25 6 4.8264 -2.7794 -2.1871 26 6 4.8448 -1.9487 -1.0854 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.2150 2.3192 -0.0005 31 1 0.1565 4.6890 0.5111 32 1 1.6487 5.6594 0.5115 33 1 0.3163 6.0759 -1.4269 34 1 3.7900 4.6456 -0.0003 35 1 5.1401 2.5882 0.0014 36 1 4.7472 -0.1120 0.7596 37 1 2.9864 0.6051 -2.3055 38 1 2.9607 -0.8735 -4.2712 39 1 5.0849 -7.1962 -5.8835 40 1 5.3390 -3.7296 -2.1554 41 1 5.3719 -2.2483 -0.1917 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212610250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:09 Heat of formation + Delta-G solvation = -44.157386 kcal Electronic energy + Delta-G solvation = -25333.438474 eV Core-core repulsion = 21566.082330 eV Total energy + Delta-G solvation = -3767.356144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55163 -39.00456 -37.96942 -37.34627 -36.39859 -34.39446 -32.20883 -30.88649 -30.33232 -29.93314 -27.68499 -27.59436 -25.55075 -24.53392 -22.55254 -22.04083 -21.54464 -20.56217 -18.09739 -17.78748 -17.60206 -17.32756 -16.76748 -16.57974 -16.16548 -15.61400 -14.95938 -14.67548 -14.57582 -14.16310 -13.78527 -13.76714 -13.64396 -13.54807 -13.05004 -12.67124 -12.60911 -12.21710 -12.14121 -12.07244 -11.94017 -11.63206 -11.44489 -11.16570 -11.02741 -10.83414 -10.57688 -10.42492 -10.06745 -9.57891 -9.24841 -8.90860 -8.58187 -8.19036 -8.10948 -6.50651 -6.28091 -3.92490 1.04188 1.31917 2.19036 2.50827 3.25373 3.30959 3.33580 3.43500 3.49415 3.74033 4.17184 4.35166 4.58200 4.65398 4.70679 4.83738 4.96436 5.03356 5.04897 5.09381 5.13603 5.24974 5.32379 5.44187 5.48279 5.59507 5.66283 5.74820 6.00251 6.17470 6.20850 6.25473 6.37814 6.46425 6.60939 6.83365 6.89829 7.05936 7.26704 7.31201 7.38405 7.54513 7.85331 8.00037 8.09878 8.21315 9.08568 9.74983 10.80476 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.020325 B = 0.002969 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.301363 B = 9428.168355 C = 9790.452208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.295 6.295 3 C 0.115 3.885 4 C -0.181 4.181 5 C -0.071 4.071 6 C 0.119 3.881 7 O -0.565 6.565 8 C -0.125 4.125 9 C -0.101 4.101 10 C 0.146 3.854 11 N -0.699 5.699 12 C 0.130 3.870 13 C -0.126 4.126 14 C -0.153 4.153 15 C 0.124 3.876 16 O -0.227 6.227 17 C -0.383 4.383 18 H 0.104 0.896 19 C 0.060 3.940 20 N -0.888 5.888 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.260 1.260 25 C -0.181 4.181 26 C -0.133 4.133 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.128 0.872 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.379 0.621 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.401 0.599 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.277 0.723 40 H 0.134 0.866 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.551 21.979 13.873 27.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.207 6.207 3 C 0.067 3.933 4 C -0.201 4.201 5 C -0.072 4.072 6 C 0.042 3.958 7 O -0.371 6.371 8 C -0.144 4.144 9 C -0.121 4.121 10 C 0.050 3.950 11 N -0.329 5.329 12 C 0.034 3.966 13 C -0.148 4.148 14 C -0.173 4.173 15 C 0.073 3.927 16 O -0.134 6.134 17 C -0.459 4.459 18 H 0.121 0.879 19 C -0.142 4.142 20 N -0.528 5.528 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.184 1.184 25 C -0.201 4.201 26 C -0.155 4.155 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.146 0.854 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.226 0.774 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.237 0.763 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.152 0.848 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.261 21.107 13.333 26.297 hybrid contribution -0.677 0.499 -0.155 0.856 sum -8.938 21.606 13.178 26.840 Atomic orbital electron populations 1.23069 0.78969 1.04096 1.00810 1.86294 1.20657 1.25677 1.88042 1.19449 0.91942 0.84702 0.97209 1.20987 0.99859 0.91419 1.07806 1.19303 0.93662 0.93271 1.00947 1.20950 0.97408 0.93591 0.83852 1.86616 1.76523 1.47741 1.26225 1.20769 0.92753 0.98182 1.02725 1.21199 1.00296 0.90631 0.99984 1.16889 0.86752 0.87318 1.04032 1.41444 1.51653 1.22004 1.17836 1.17351 1.00981 0.91140 0.87130 1.20132 1.02749 0.99651 0.92227 1.19989 1.04266 0.94024 0.98982 1.18966 0.95464 0.91072 0.87227 1.83572 1.72521 1.25449 1.31828 1.20714 1.34117 0.86513 1.04559 0.87909 1.24423 0.96896 0.93978 0.98916 1.69664 1.44330 1.04792 1.33989 0.86189 0.80589 0.78033 0.82122 1.20057 1.21056 1.18438 1.21068 1.04180 1.01509 0.93300 1.20262 1.03387 0.93123 0.98750 0.92736 0.88154 0.93100 0.85411 0.92970 0.92665 0.77441 0.85782 0.84933 0.76273 0.87418 0.86635 0.91332 0.84816 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.29 -4.25 9.46 -19.76 -0.19 -4.44 16 3 C 0.12 1.56 5.59 -39.07 -0.22 1.35 16 4 C -0.18 -2.08 8.69 -39.47 -0.34 -2.43 16 5 C -0.07 -0.75 5.51 -104.59 -0.58 -1.33 16 6 C 0.12 0.92 7.17 36.01 0.26 1.18 16 7 O -0.57 -4.99 13.64 -35.23 -0.48 -5.47 16 8 C -0.13 -1.31 9.69 -39.58 -0.38 -1.69 16 9 C -0.10 -1.17 9.97 -39.40 -0.39 -1.56 16 10 C 0.15 1.99 4.92 -83.55 -0.41 1.58 16 11 N -0.70 -10.14 5.25 -8.26 -0.04 -10.19 16 12 C 0.13 2.33 6.18 -83.70 -0.52 1.81 16 13 C -0.13 -2.40 8.67 -39.40 -0.34 -2.75 16 14 C -0.15 -3.26 9.98 -39.42 -0.39 -3.65 16 15 C 0.12 2.99 6.65 -39.08 -0.26 2.73 16 16 O -0.23 -6.23 8.58 -0.01 0.00 -6.23 16 17 C -0.38 -11.13 9.94 30.87 0.31 -10.83 16 18 H 0.10 3.04 5.43 -52.49 -0.29 2.75 16 19 C 0.06 1.72 5.49 -17.52 -0.10 1.63 16 20 N -0.89 -26.42 13.96 55.48 0.77 -25.65 16 21 Si 0.90 22.46 28.62 -169.99 -4.86 17.60 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.26 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.18 -4.04 9.16 -39.42 -0.36 -4.40 16 26 C -0.13 -2.51 9.89 -39.40 -0.39 -2.90 16 27 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 28 H 0.10 0.93 8.14 -51.92 -0.42 0.50 16 29 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 30 H 0.13 1.23 6.30 -52.48 -0.33 0.90 16 31 H 0.05 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.38 1.37 9.12 45.56 0.42 1.78 16 34 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 35 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.40 4.92 8.84 -40.82 -0.36 4.56 16 37 H 0.11 1.96 6.44 -52.48 -0.34 1.62 16 38 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 39 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.13 3.11 5.64 -52.49 -0.30 2.81 16 41 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 350.08 15.07 5.28 5.28 Total: -1.00 -34.27 350.08 -6.73 -41.00 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -4.08 Total: 8.11 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -3.13 Total: -20.01 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.73 Total: -35.83 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.67 Total: -16.14 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.86 Total: 17.60 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.27 -6.73 -41.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212610250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.156 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds