Wall clock time and date at job start Tue Mar 31 2020 10:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35996 * 117.00306 * 2 1 4 4 C 1.38512 * 120.08016 * 359.72394 * 3 2 1 5 5 C 1.38284 * 120.01878 * 180.25318 * 4 3 2 6 6 C 1.38269 * 120.18686 * 359.78876 * 5 4 3 7 7 C 1.38213 * 120.16558 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.01221 * 179.97438 * 7 6 5 9 9 O 1.42906 * 109.47002 * 359.97438 * 8 7 6 10 10 C 1.38763 * 119.97512 * 359.97438 * 7 6 5 11 11 N 1.39935 * 120.09036 * 179.97438 * 10 7 6 12 12 C 1.39756 * 119.99936 * 89.85071 * 11 10 7 13 13 C 1.38989 * 120.00670 * 175.63265 * 12 11 10 14 14 C 1.37987 * 119.99038 * 179.97438 * 13 12 11 15 15 C 1.38922 * 120.00658 * 0.02562 * 14 13 12 16 16 O 1.35793 * 119.98920 * 179.97438 * 15 14 13 17 17 C 1.34813 * 116.99937 * 1.72736 * 16 15 14 18 18 H 1.07997 * 120.00113 * 5.33642 * 17 16 15 19 19 C 1.38609 * 119.99973 * 185.34254 * 17 16 15 20 20 N 1.31594 * 119.99752 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00427 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47039 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47128 * 119.99712 * 21 19 17 24 24 H 1.48496 * 109.47559 * 240.00141 * 21 19 17 25 25 C 1.38914 * 120.01619 * 0.25146 * 15 14 13 26 26 C 1.37987 * 120.00736 * 359.49045 * 25 15 14 27 27 H 1.09010 * 109.46665 * 300.00024 * 1 2 3 28 28 H 1.08999 * 109.46897 * 59.99463 * 1 2 3 29 29 H 1.08992 * 109.47538 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99074 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.91113 * 179.76869 * 5 4 3 32 32 H 1.08005 * 119.92025 * 179.97438 * 6 5 4 33 33 H 1.08995 * 109.46922 * 119.97698 * 8 7 6 34 34 H 1.08989 * 109.46969 * 239.98019 * 8 7 6 35 35 H 0.96703 * 113.99999 * 180.02562 * 9 8 7 36 36 H 0.96996 * 119.99972 * 269.84828 * 11 10 7 37 37 H 1.07993 * 120.00536 * 359.95801 * 13 12 11 38 38 H 1.07995 * 119.99730 * 180.02562 * 14 13 12 39 39 H 0.96999 * 119.99532 * 180.02562 * 20 19 17 40 40 H 1.08002 * 119.99428 * 179.74781 * 25 15 14 41 41 H 1.08008 * 120.00420 * 180.25704 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2938 2.3745 -0.0058 5 6 1.9230 3.6058 -0.0111 6 6 3.3036 3.6812 -0.0062 7 6 4.0622 2.5258 0.0034 8 6 5.5667 2.6120 0.0081 9 8 5.9653 3.9843 0.0006 10 6 3.4379 1.2866 0.0088 11 7 4.2036 0.1153 0.0180 12 6 4.5848 -0.4607 1.2329 13 6 5.2669 -1.6717 1.2443 14 6 5.6437 -2.2399 2.4440 15 6 5.3408 -1.6019 3.6403 16 8 5.7112 -2.1617 4.8207 17 6 6.4010 -3.3184 4.7598 18 1 6.7096 -3.7134 3.8032 19 6 6.7141 -4.0008 5.9250 20 7 6.3375 -3.5197 7.0906 21 14 7.6692 -5.6038 5.8407 22 1 7.9710 -5.9262 4.4229 23 1 8.9393 -5.4636 6.5971 24 1 6.8571 -6.6958 6.4350 25 6 4.6540 -0.3945 3.6295 26 6 4.2816 0.1769 2.4300 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2152 2.3193 -0.0099 31 1 1.3344 4.5113 -0.0193 32 1 3.7906 4.6452 -0.0108 33 1 5.9557 2.1255 0.9026 34 1 5.9619 2.1141 -0.8772 35 1 6.9234 4.1156 0.0027 36 1 4.4696 -0.2967 -0.8188 37 1 5.5018 -2.1679 0.3143 38 1 6.1740 -3.1806 2.4529 39 1 6.5569 -3.9971 7.9059 40 1 4.4151 0.0991 4.5600 41 1 3.7513 1.1178 2.4215 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212610263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:13 Heat of formation + Delta-G solvation = -46.398247 kcal Electronic energy + Delta-G solvation = -25588.728941 eV Core-core repulsion = 21821.275626 eV Total energy + Delta-G solvation = -3767.453315 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.52031 -38.90357 -38.08198 -36.87871 -36.28774 -34.32828 -32.09182 -31.04064 -30.23905 -29.58674 -27.50443 -27.10295 -25.74424 -25.02132 -22.56208 -21.81224 -21.22066 -20.56394 -18.08203 -17.75467 -17.62514 -17.12425 -16.71720 -16.17358 -15.80151 -15.62627 -14.91967 -14.83371 -14.45815 -14.32641 -13.97482 -13.86496 -13.50662 -13.41397 -12.82911 -12.72772 -12.45121 -12.39777 -12.08944 -11.70696 -11.60288 -11.49491 -11.34009 -11.17798 -11.02944 -10.90872 -10.54463 -10.36374 -10.33244 -9.34382 -9.18858 -8.70465 -8.49184 -8.16827 -8.13557 -6.44046 -6.32245 -3.89192 1.15026 1.39614 2.23832 2.57504 3.16421 3.18639 3.19728 3.25009 3.59852 3.82633 4.06526 4.13582 4.68373 4.76306 4.80343 4.97802 5.04627 5.15631 5.21385 5.25695 5.36704 5.39905 5.44146 5.46419 5.58768 5.68312 5.73098 5.81963 6.16285 6.25447 6.29817 6.38368 6.45964 6.54905 6.67622 6.88649 6.95815 7.16451 7.28002 7.36685 7.48071 7.49047 7.68255 8.08834 8.13135 8.20712 9.14110 9.88818 10.86843 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017916 B = 0.003205 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.434987 B = 8734.874465 C = 9458.998319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.300 6.300 3 C 0.125 3.875 4 C -0.209 4.209 5 C -0.086 4.086 6 C -0.132 4.132 7 C -0.055 4.055 8 C 0.123 3.877 9 O -0.572 6.572 10 C 0.134 3.866 11 N -0.705 5.705 12 C 0.124 3.876 13 C -0.134 4.134 14 C -0.193 4.193 15 C 0.117 3.883 16 O -0.188 6.188 17 C -0.386 4.386 18 H 0.089 0.911 19 C 0.036 3.964 20 N -0.868 5.868 21 Si 0.938 3.062 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.277 1.277 25 C -0.152 4.152 26 C -0.132 4.132 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.134 0.866 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.383 0.617 36 H 0.399 0.601 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.267 0.733 40 H 0.116 0.884 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.235 11.637 -16.931 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.212 6.212 3 C 0.077 3.923 4 C -0.229 4.229 5 C -0.104 4.104 6 C -0.151 4.151 7 C -0.057 4.057 8 C 0.046 3.954 9 O -0.378 6.378 10 C 0.039 3.961 11 N -0.338 5.338 12 C 0.028 3.972 13 C -0.156 4.156 14 C -0.213 4.213 15 C 0.065 3.935 16 O -0.092 6.092 17 C -0.463 4.463 18 H 0.106 0.894 19 C -0.167 4.167 20 N -0.505 5.505 21 Si 0.763 3.237 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.203 1.203 25 C -0.172 4.172 26 C -0.154 4.154 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.230 0.770 36 H 0.235 0.765 37 H 0.125 0.875 38 H 0.146 0.854 39 H 0.076 0.924 40 H 0.134 0.866 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.883 11.615 -16.367 21.563 hybrid contribution 0.738 -1.022 -0.376 1.315 sum -7.145 10.594 -16.743 21.062 Atomic orbital electron populations 1.23058 0.78925 1.03920 1.00970 1.86216 1.20690 1.26153 1.88189 1.19503 0.91916 0.84587 0.96277 1.21178 0.99923 0.92199 1.09573 1.20954 0.94582 0.96835 0.98038 1.20815 0.93026 0.98543 1.02695 1.19894 0.94945 0.92156 0.98704 1.20727 0.91045 0.82490 1.01161 1.86379 1.28222 1.25382 1.97855 1.16336 0.86440 0.86531 1.06763 1.41273 1.60347 1.26611 1.05588 1.17331 1.00927 0.94006 0.84915 1.20205 1.03154 0.94856 0.97391 1.20969 1.06670 1.02199 0.91499 1.19260 0.94676 0.92954 0.86625 1.83997 1.64540 1.36523 1.24176 1.21284 1.32097 0.98265 0.94654 0.89367 1.25221 0.98026 0.99149 0.94317 1.70068 1.44317 1.38654 0.97446 0.85697 0.78881 0.80488 0.78631 1.19246 1.20322 1.20319 1.19997 1.04097 0.95758 0.97381 1.20166 1.04504 1.00044 0.90706 0.92701 0.93000 0.88309 0.85490 0.85790 0.84821 0.91180 0.92240 0.76979 0.76540 0.87511 0.85432 0.92357 0.86595 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.30 -4.17 10.24 -19.73 -0.20 -4.37 16 3 C 0.12 1.70 6.70 -39.07 -0.26 1.44 16 4 C -0.21 -2.37 9.04 -39.46 -0.36 -2.73 16 5 C -0.09 -0.92 10.04 -39.55 -0.40 -1.32 16 6 C -0.13 -1.59 9.37 -39.58 -0.37 -1.96 16 7 C -0.05 -0.72 5.82 -104.44 -0.61 -1.33 16 8 C 0.12 1.45 6.84 36.01 0.25 1.69 16 9 O -0.57 -6.01 12.14 -35.23 -0.43 -6.44 16 10 C 0.13 1.88 4.35 -83.55 -0.36 1.52 16 11 N -0.71 -10.25 4.54 -8.26 -0.04 -10.29 16 12 C 0.12 2.20 6.63 -83.69 -0.56 1.65 16 13 C -0.13 -2.49 9.89 -39.40 -0.39 -2.88 16 14 C -0.19 -4.27 9.15 -39.42 -0.36 -4.63 16 15 C 0.12 2.91 6.66 -39.08 -0.26 2.65 16 16 O -0.19 -5.49 9.76 -0.04 0.00 -5.49 16 17 C -0.39 -11.03 9.47 30.87 0.29 -10.74 16 18 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 19 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 20 N -0.87 -26.09 13.67 55.48 0.76 -25.33 16 21 Si 0.94 20.99 29.55 -169.99 -5.02 15.96 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 25 C -0.15 -3.37 9.98 -39.42 -0.39 -3.76 16 26 C -0.13 -2.55 9.31 -39.40 -0.37 -2.92 16 27 H 0.05 0.48 7.68 -51.92 -0.40 0.08 16 28 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.13 1.53 7.00 -52.48 -0.37 1.16 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.63 8.14 -51.94 -0.42 0.21 16 35 H 0.38 2.32 9.12 45.56 0.42 2.73 16 36 H 0.40 5.04 8.84 -40.82 -0.36 4.68 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 41 H 0.11 1.96 6.93 -52.48 -0.36 1.60 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -33.98 351.05 -6.94 -40.92 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.04 Total: 10.91 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -3.25 Total: -21.16 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.72 Total: -35.62 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.63 Total: -16.30 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.98 -6.94 -40.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212610263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.483 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds