Wall clock time and date at job start Tue Mar 31 2020 10:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00282 * 2 1 4 4 C 1.38818 * 120.01883 * 179.97438 * 3 2 1 5 5 C 1.38186 * 120.09361 * 180.02562 * 4 3 2 6 6 C 1.50697 * 119.93005 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.47027 * 90.00229 * 6 5 4 8 8 C 1.38139 * 120.13295 * 359.74328 * 5 4 3 9 9 C 1.38961 * 120.03496 * 0.51183 * 8 5 4 10 10 N 1.39670 * 120.04869 * 179.77119 * 9 8 5 11 11 C 1.39802 * 119.99743 * 210.70363 * 10 9 8 12 12 C 1.38974 * 120.00581 * 25.91866 * 11 10 9 13 13 C 1.37991 * 119.99317 * 179.97438 * 12 11 10 14 14 C 1.38909 * 120.00535 * 359.97438 * 13 12 11 15 15 O 1.35788 * 119.99204 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99888 * 6.81466 * 15 14 13 17 17 H 1.07997 * 119.99777 * 354.61761 * 16 15 14 18 18 C 1.38618 * 119.99676 * 174.61055 * 16 15 14 19 19 N 1.31588 * 119.99680 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00241 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47522 * 89.99467 * 20 18 16 22 22 H 1.48505 * 109.46917 * 209.99873 * 20 18 16 23 23 H 1.48504 * 109.46873 * 329.99336 * 20 18 16 24 24 C 1.38915 * 120.01728 * 0.28288 * 14 13 12 25 25 C 1.37994 * 120.00340 * 359.44683 * 24 14 13 26 26 C 1.38563 * 120.01360 * 0.02562 * 3 2 1 27 27 H 1.09004 * 109.46953 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46725 * 299.99585 * 1 2 3 29 29 H 1.08997 * 109.46975 * 59.99573 * 1 2 3 30 30 H 1.07991 * 119.95236 * 359.97438 * 4 3 2 31 31 H 1.09003 * 109.47274 * 209.99886 * 6 5 4 32 32 H 1.09002 * 109.47649 * 330.00462 * 6 5 4 33 33 H 0.96704 * 114.00483 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.98272 * 180.25322 * 8 5 4 35 35 H 0.96998 * 120.00360 * 30.70665 * 10 9 8 36 36 H 1.08003 * 120.00310 * 359.95053 * 12 11 10 37 37 H 1.08002 * 119.99499 * 180.02562 * 13 12 11 38 38 H 0.96996 * 119.99988 * 179.97438 * 19 18 16 39 39 H 1.08002 * 119.99548 * 179.69935 * 24 14 13 40 40 H 1.08003 * 120.00375 * 180.27974 * 25 24 14 41 41 H 1.08000 * 120.06647 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4323 1.2839 0.0005 5 6 4.0613 2.5143 0.0011 6 6 5.5664 2.5893 0.0011 7 8 6.0421 2.6136 -1.3462 8 6 3.3132 3.6756 -0.0043 9 6 1.9252 3.6088 0.0005 10 7 1.1686 4.7828 0.0000 11 6 -0.0830 4.8080 0.6223 12 6 -0.3603 3.9279 1.6615 13 6 -1.5956 3.9534 2.2759 14 6 -2.5617 4.8589 1.8561 15 8 -3.7770 4.8841 2.4613 16 6 -3.9344 4.1059 3.5509 17 1 -3.1443 3.4350 3.8539 18 6 -5.1103 4.1672 4.2823 19 7 -5.2641 3.4073 5.3456 20 14 -6.4772 5.3274 3.7578 21 1 -7.3892 4.6257 2.8193 22 1 -7.2399 5.7665 4.9540 23 1 -5.8889 6.5125 3.0834 24 6 -2.2868 5.7351 0.8139 25 6 -1.0497 5.7140 0.2027 26 6 1.2917 2.3731 0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 4.0200 0.3779 0.0014 31 1 5.8851 3.4960 0.5153 32 1 5.9737 1.7182 0.5144 33 1 7.0049 2.6612 -1.4227 34 1 3.8074 4.6359 -0.0080 35 1 1.5115 5.5806 -0.4322 36 1 0.3908 3.2239 1.9879 37 1 -1.8110 3.2697 3.0838 38 1 -6.0868 3.4505 5.8576 39 1 -3.0399 6.4357 0.4845 40 1 -0.8344 6.3983 -0.6046 41 1 0.2131 2.3182 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212612179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:20 Heat of formation + Delta-G solvation = -50.304689 kcal Electronic energy + Delta-G solvation = -25171.147434 eV Core-core repulsion = 21403.524723 eV Total energy + Delta-G solvation = -3767.622711 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.45747 -39.28173 -38.19033 -37.50044 -36.30725 -34.40310 -32.35678 -31.05216 -30.35114 -29.97178 -27.93096 -26.88422 -25.91696 -25.06791 -22.87552 -21.73232 -21.56698 -20.36582 -18.23753 -17.79331 -17.69141 -17.52663 -16.75104 -16.01847 -15.81517 -15.78324 -15.64845 -14.76307 -14.48458 -14.28918 -13.98725 -13.88376 -13.79747 -13.35913 -13.09694 -12.70313 -12.59777 -12.32785 -12.28693 -12.09264 -11.89376 -11.72132 -11.48978 -11.18626 -11.03389 -10.92291 -10.74782 -10.33970 -10.22542 -9.95667 -9.44181 -8.91146 -8.48261 -8.36461 -8.03473 -6.72029 -6.43467 -4.09147 1.24570 1.45865 1.96525 2.26669 3.20739 3.23432 3.25028 3.37861 3.50090 3.66773 4.21536 4.29700 4.42005 4.80071 4.82079 4.91394 5.06706 5.08556 5.09784 5.20522 5.24437 5.26102 5.42336 5.44973 5.47150 5.49531 5.58951 5.75734 6.00167 6.04245 6.19268 6.26999 6.35889 6.50156 6.56852 6.67431 6.78010 6.85778 7.16699 7.27352 7.34065 7.41717 7.68095 7.74980 7.88865 8.01802 8.91807 9.54045 10.64304 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.002959 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.260674 B = 9461.580637 C =10222.158931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.318 6.318 3 C 0.158 3.842 4 C -0.176 4.176 5 C -0.026 4.026 6 C 0.120 3.880 7 O -0.566 6.566 8 C -0.193 4.193 9 C 0.234 3.766 10 N -0.682 5.682 11 C 0.084 3.916 12 C -0.113 4.113 13 C -0.191 4.191 14 C 0.138 3.862 15 O -0.219 6.219 16 C -0.388 4.388 17 H 0.105 0.895 18 C 0.063 3.937 19 N -0.881 5.881 20 Si 0.906 3.094 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.162 4.162 25 C -0.116 4.116 26 C -0.250 4.250 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.126 0.874 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.378 0.622 34 H 0.122 0.878 35 H 0.404 0.596 36 H 0.115 0.885 37 H 0.136 0.864 38 H 0.279 0.721 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.831 -1.288 -11.136 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.231 6.231 3 C 0.111 3.889 4 C -0.196 4.196 5 C -0.027 4.027 6 C 0.042 3.958 7 O -0.372 6.372 8 C -0.215 4.215 9 C 0.133 3.867 10 N -0.305 5.305 11 C -0.010 4.010 12 C -0.134 4.134 13 C -0.211 4.211 14 C 0.086 3.914 15 O -0.124 6.124 16 C -0.464 4.464 17 H 0.123 0.877 18 C -0.140 4.140 19 N -0.519 5.519 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.184 1.184 24 C -0.182 4.182 25 C -0.137 4.137 26 C -0.272 4.272 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.144 0.856 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.225 0.775 34 H 0.140 0.860 35 H 0.240 0.760 36 H 0.133 0.867 37 H 0.154 0.846 38 H 0.089 0.911 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 16.797 -1.513 -11.047 20.161 hybrid contribution -0.177 0.822 0.026 0.841 sum 16.621 -0.691 -11.021 19.955 Atomic orbital electron populations 1.23106 0.77854 1.03931 1.02073 1.86037 1.21765 1.26766 1.88499 1.18696 0.91818 0.83872 0.94475 1.20021 0.91170 0.97731 1.10693 1.18981 0.93772 0.92094 0.97877 1.20954 0.90547 1.00513 0.83747 1.86585 1.26691 1.97553 1.26352 1.20509 0.91705 0.98252 1.11083 1.17358 0.89854 0.86151 0.93344 1.41884 1.17353 1.10855 1.60407 1.17350 0.85772 1.01467 0.96452 1.20665 0.97211 1.00355 0.95135 1.21151 0.93618 1.02549 1.03765 1.19066 0.85542 0.93784 0.93036 1.83577 1.26912 1.61507 1.40453 1.20731 1.04674 1.19220 1.01773 0.87747 1.24458 0.97868 0.97279 0.94439 1.69659 1.27709 1.38422 1.16089 0.86177 0.80911 0.81602 0.78190 1.19923 1.20851 1.18365 1.20021 0.97173 1.01779 0.99244 1.20285 0.92152 1.00705 1.00543 1.21136 1.00937 0.91040 1.14100 0.88198 0.91995 0.92580 0.85611 0.92574 0.92533 0.77467 0.86029 0.76029 0.86678 0.84622 0.91067 0.86105 0.86581 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.38 10.50 -19.42 -0.20 -4.58 16 3 C 0.16 2.24 6.68 -39.25 -0.26 1.98 16 4 C -0.18 -2.29 9.63 -39.39 -0.38 -2.67 16 5 C -0.03 -0.32 5.50 -104.68 -0.58 -0.89 16 6 C 0.12 1.06 7.17 36.00 0.26 1.32 16 7 O -0.57 -5.23 13.64 -35.23 -0.48 -5.71 16 8 C -0.19 -2.42 9.61 -39.35 -0.38 -2.80 16 9 C 0.23 3.27 5.93 -83.79 -0.50 2.77 16 10 N -0.68 -9.29 5.47 -8.38 -0.05 -9.33 16 11 C 0.08 1.37 6.05 -83.68 -0.51 0.87 16 12 C -0.11 -2.03 7.83 -39.40 -0.31 -2.34 16 13 C -0.19 -3.98 9.16 -39.42 -0.36 -4.34 16 14 C 0.14 3.06 6.65 -39.08 -0.26 2.80 16 15 O -0.22 -5.62 8.58 -0.03 0.00 -5.62 16 16 C -0.39 -10.72 9.94 30.87 0.31 -10.41 16 17 H 0.11 2.94 5.44 -52.49 -0.29 2.65 16 18 C 0.06 1.73 5.49 -17.52 -0.10 1.64 16 19 N -0.88 -25.18 13.96 55.48 0.77 -24.40 16 20 Si 0.91 21.39 28.62 -169.99 -4.86 16.52 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 24 C -0.16 -3.05 9.98 -39.42 -0.39 -3.45 16 25 C -0.12 -1.87 9.94 -39.40 -0.39 -2.26 16 26 C -0.25 -3.65 6.72 -39.23 -0.26 -3.92 16 27 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.75 7.66 -51.93 -0.40 0.35 16 29 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 30 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.38 1.49 9.12 45.56 0.42 1.91 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.40 4.50 8.89 -40.82 -0.36 4.13 16 36 H 0.12 1.98 6.32 -52.48 -0.33 1.65 16 37 H 0.14 2.98 5.65 -52.49 -0.30 2.69 16 38 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 41 H 0.14 2.10 4.76 -52.49 -0.25 1.85 16 LS Contribution 348.54 15.07 5.25 5.25 Total: -1.00 -31.69 348.54 -6.68 -38.37 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -3.99 Total: 9.92 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -3.12 Total: -20.42 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.73 Total: -33.74 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.68 Total: -15.91 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.86 Total: 16.52 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.69 -6.68 -38.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212612179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.930 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds