Wall clock time and date at job start Tue Mar 31 2020 10:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45200 * 109.47449 * 2 1 4 4 C 1.34225 * 117.00295 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00157 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00003 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.47191 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.47297 * 55.00112 * 7 6 4 9 9 C 1.50699 * 109.47266 * 175.00008 * 7 6 4 10 10 H 1.07999 * 120.00134 * 239.99899 * 9 7 6 11 11 C 1.37879 * 120.00018 * 60.00419 * 9 7 6 12 12 N 1.31516 * 119.99721 * 359.97438 * 11 9 7 13 13 Si 1.86794 * 120.00145 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47677 * 59.99180 * 13 11 9 15 15 H 1.48501 * 109.47346 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46912 * 299.99216 * 13 11 9 17 17 O 1.42902 * 109.46973 * 295.00251 * 7 6 4 18 18 C 1.35888 * 117.00044 * 155.89877 * 17 7 6 19 19 C 1.39853 * 119.51944 * 5.45117 * 18 17 7 20 20 C 1.36105 * 120.96543 * 180.27603 * 19 18 17 21 21 C 1.40282 * 119.55577 * 359.46847 * 20 19 18 22 22 C 1.40673 * 122.16766 * 180.23419 * 21 20 19 23 23 C 1.36182 * 118.69185 * 180.26669 * 22 21 20 24 24 N 1.32601 * 121.88302 * 359.97438 * 23 22 21 25 25 C 1.31247 * 122.76735 * 0.04118 * 24 23 22 26 26 C 1.40467 * 119.88237 * 359.96019 * 25 24 23 27 27 C 1.36649 * 119.52116 * 185.43391 * 18 17 7 28 28 H 1.09002 * 109.46915 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47504 * 300.00490 * 1 2 3 30 30 H 1.09005 * 109.46633 * 60.00513 * 1 2 3 31 31 H 1.09000 * 109.47794 * 239.99496 * 2 1 3 32 32 H 1.09005 * 109.47077 * 119.99785 * 2 1 3 33 33 H 1.09000 * 109.46991 * 60.00533 * 6 4 3 34 34 H 1.09004 * 109.47246 * 300.00118 * 6 4 3 35 35 H 0.96999 * 119.99411 * 180.02562 * 12 11 9 36 36 H 1.08005 * 119.51749 * 0.02562 * 19 18 17 37 37 H 1.08006 * 120.22518 * 179.72554 * 20 19 18 38 38 H 1.08002 * 120.65469 * 0.28755 * 22 21 20 39 39 H 1.08001 * 119.06356 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.06042 * 179.97438 * 25 24 23 41 41 H 1.07994 * 120.25366 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4486 2.8573 0.0001 8 1 5.7807 2.2493 -0.8414 9 6 6.0244 4.2444 -0.1243 10 1 6.6592 4.4925 -0.9620 11 6 5.7407 5.1969 0.8315 12 7 4.9673 4.8949 1.8515 13 14 6.4538 6.9164 0.6770 14 1 5.9901 7.5325 -0.5920 15 1 6.0011 7.7449 1.8233 16 1 7.9369 6.8391 0.6768 17 8 5.8944 2.2643 1.2214 18 6 7.1122 1.6615 1.2061 19 6 7.9085 1.7461 0.0596 20 6 9.1305 1.1489 0.0101 21 6 9.6037 0.4473 1.1289 22 6 10.8596 -0.1862 1.1396 23 6 11.2462 -0.8528 2.2625 24 7 10.4741 -0.9188 3.3385 25 6 9.2915 -0.3528 3.4001 26 6 8.7983 0.3598 2.2946 27 6 7.5410 0.9817 2.3112 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5845 3.4700 0.8895 34 1 3.5852 3.4691 -0.8905 35 1 4.7675 5.5650 2.5237 36 1 7.5469 2.2900 -0.8006 37 1 9.7338 1.2182 -0.8831 38 1 11.5048 -0.1445 0.2745 39 1 12.2091 -1.3416 2.2771 40 1 8.6988 -0.4347 4.2991 41 1 6.9166 0.9235 3.1905 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225450705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:13 Heat of formation + Delta-G solvation = -91.676645 kcal Electronic energy + Delta-G solvation = -25902.881779 eV Core-core repulsion = 22133.465045 eV Total energy + Delta-G solvation = -3769.416734 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.75993 -41.37900 -39.89762 -37.71580 -37.05973 -35.12113 -33.69313 -32.88736 -32.01832 -31.64436 -29.81100 -28.19605 -25.19940 -24.89442 -24.09445 -23.30667 -22.96407 -21.54849 -19.72622 -18.79930 -18.60751 -18.03420 -17.61703 -17.44978 -17.20219 -16.57678 -16.32802 -15.94691 -15.58790 -15.31919 -15.15112 -14.91027 -14.61718 -14.30722 -14.17763 -13.93932 -13.65771 -13.57457 -13.26466 -13.03959 -12.83138 -12.75985 -12.65653 -12.47866 -12.46062 -12.21421 -12.09229 -11.50134 -11.47772 -11.30833 -11.13942 -10.70365 -10.69301 -10.43020 -9.63103 -8.53415 -8.16984 -6.45572 -0.49501 0.10803 1.07296 1.31462 1.42940 1.45572 1.51720 1.83791 2.23900 2.38058 2.73401 3.21303 3.23822 3.58347 3.74544 3.89465 3.95382 4.00340 4.04001 4.12058 4.13555 4.29672 4.34491 4.41251 4.50479 4.55536 4.66538 4.77748 4.86713 4.91099 4.92732 4.97323 5.04777 5.13694 5.20356 5.30886 5.45616 5.50719 5.55824 5.70660 5.78402 5.91286 5.94315 6.54169 6.87193 7.01816 7.08300 7.36231 8.81723 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.009310 B = 0.004958 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.736756 B = 5645.845161 C = 7903.565295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.367 6.367 4 C 0.463 3.537 5 O -0.539 6.539 6 C -0.098 4.098 7 C 0.223 3.777 8 H 0.029 0.971 9 C -0.574 4.574 10 H 0.069 0.931 11 C 0.048 3.952 12 N -0.881 5.881 13 Si 0.951 3.049 14 H -0.261 1.261 15 H -0.284 1.284 16 H -0.279 1.279 17 O -0.309 6.309 18 C 0.158 3.842 19 C -0.170 4.170 20 C -0.076 4.076 21 C -0.087 4.087 22 C -0.130 4.130 23 C 0.037 3.963 24 N -0.500 5.500 25 C 0.119 3.881 26 C -0.077 4.077 27 C -0.193 4.193 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.268 0.732 36 H 0.135 0.865 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.180 0.820 40 H 0.174 0.826 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 -7.503 -3.880 8.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.284 6.284 4 C 0.309 3.691 5 O -0.429 6.429 6 C -0.135 4.135 7 C 0.169 3.831 8 H 0.047 0.953 9 C -0.610 4.610 10 H 0.087 0.913 11 C -0.157 4.157 12 N -0.517 5.517 13 Si 0.776 3.224 14 H -0.186 1.186 15 H -0.210 1.210 16 H -0.205 1.205 17 O -0.222 6.222 18 C 0.110 3.890 19 C -0.190 4.190 20 C -0.094 4.094 21 C -0.093 4.093 22 C -0.149 4.149 23 C -0.106 4.106 24 N -0.208 5.208 25 C -0.052 4.052 26 C -0.079 4.079 27 C -0.214 4.214 28 H 0.121 0.879 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.077 0.923 36 H 0.152 0.848 37 H 0.181 0.819 38 H 0.186 0.814 39 H 0.197 0.803 40 H 0.191 0.809 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.943 -8.214 -2.923 8.769 hybrid contribution -0.223 1.455 -0.681 1.622 sum 0.721 -6.759 -3.604 7.694 Atomic orbital electron populations 1.21807 0.89951 1.04417 1.03704 1.23271 0.97437 0.79725 1.02043 1.86546 1.24340 1.33489 1.84026 1.24580 0.80341 0.93539 0.70689 1.90582 1.61030 1.44210 1.47099 1.21679 0.95763 0.88943 1.07131 1.19808 0.89732 0.91931 0.81665 0.95264 1.21581 1.33204 0.95709 1.10556 0.91299 1.25653 0.94000 1.01970 0.94118 1.69967 1.35006 1.35404 1.11282 0.85723 0.78655 0.79762 0.78212 1.18554 1.20966 1.20470 1.86219 1.29889 1.66561 1.39493 1.19138 0.86330 0.89559 0.93978 1.21492 0.96355 1.02368 0.98780 1.21128 0.94964 0.95045 0.98242 1.18429 0.96078 1.00550 0.94219 1.22154 0.94820 0.96894 1.00999 1.22550 1.00262 0.99112 0.88708 1.67399 1.05537 1.19003 1.28860 1.23263 0.92274 0.92532 0.97114 1.18836 0.94237 0.98848 0.95989 1.20070 0.97513 1.04899 0.98887 0.87862 0.91555 0.90980 0.91424 0.92318 0.86073 0.86228 0.92273 0.84769 0.81891 0.81414 0.80334 0.80883 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 10.29 71.98 0.74 -1.97 16 2 C 0.05 1.36 6.19 71.98 0.45 1.81 16 3 O -0.37 -13.15 10.22 -51.37 -0.53 -13.68 16 4 C 0.46 19.42 7.84 71.24 0.56 19.98 16 5 O -0.54 -24.98 15.17 27.04 0.41 -24.57 16 6 C -0.10 -4.29 5.22 29.85 0.16 -4.13 16 7 C 0.22 10.63 1.35 29.85 0.04 10.67 16 8 H 0.03 1.38 6.14 -2.39 -0.01 1.36 16 9 C -0.57 -28.36 7.88 25.60 0.20 -28.15 16 10 H 0.07 3.30 7.81 -2.91 -0.02 3.28 16 11 C 0.05 2.39 5.24 84.65 0.44 2.84 16 12 N -0.88 -46.20 10.93 21.45 0.23 -45.97 16 13 Si 0.95 40.00 29.54 68.60 2.03 42.02 16 14 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 15 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 17 O -0.31 -15.75 8.40 -78.49 -0.66 -16.41 16 18 C 0.16 7.28 6.54 22.29 0.15 7.43 16 19 C -0.17 -6.91 8.58 22.16 0.19 -6.72 16 20 C -0.08 -2.52 9.80 22.27 0.22 -2.30 16 21 C -0.09 -2.92 5.75 -21.27 -0.12 -3.04 16 22 C -0.13 -3.35 9.88 22.39 0.22 -3.13 16 23 C 0.04 0.96 11.07 84.10 0.93 1.89 16 24 N -0.50 -15.51 10.30 -195.50 -2.01 -17.52 16 25 C 0.12 3.86 11.05 85.32 0.94 4.80 16 26 C -0.08 -2.83 5.74 -21.32 -0.12 -2.95 16 27 C -0.19 -8.10 9.72 22.40 0.22 -7.88 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 32 H 0.06 1.71 8.13 -2.38 -0.02 1.69 16 33 H 0.12 5.87 6.22 -2.39 -0.01 5.85 16 34 H 0.12 4.69 8.14 -2.39 -0.02 4.67 16 35 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 36 H 0.13 5.48 5.57 -2.91 -0.02 5.46 16 37 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 38 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 39 H 0.18 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.17 4.78 8.06 -2.91 -0.02 4.75 16 41 H 0.13 5.15 8.06 -2.91 -0.02 5.13 16 Total: -1.00 -63.94 351.19 5.73 -58.21 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 1.05 Total: 28.77 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 5.21 Total: -10.86 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -1.78 Total: -63.49 kcal Atomic # 8 Polarization: -53.88 SS G_CDS: -0.77 Total: -54.66 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.02 kcal Total: -63.94 5.73 -58.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225450705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.466 kcal (2) G-P(sol) polarization free energy of solvation -63.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds