Wall clock time and date at job start Tue Mar 31 2020 11:06:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42903 * 113.99759 * 2 1
4 4 O 1.42902 * 109.47354 * 74.99548 * 3 2 1
5 5 C 1.35664 * 116.99842 * 74.99882 * 4 3 2
6 6 C 1.39013 * 119.54900 * 179.97438 * 5 4 3
7 7 C 1.38146 * 119.23595 * 180.02562 * 6 5 4
8 8 C 1.39938 * 118.37998 * 359.97438 * 7 6 5
9 9 C 1.48326 * 120.47616 * 179.97438 * 8 7 6
10 10 C 1.38588 * 120.10047 * 309.75511 * 9 8 7
11 11 C 1.40618 * 119.57035 * 179.73075 * 10 9 8
12 12 C 1.41240 * 120.11641 * 180.29186 * 11 10 9
13 13 H 1.07998 * 120.00365 * 330.37157 * 12 11 10
14 14 C 1.39862 * 120.00109 * 150.37702 * 12 11 10
15 15 N 1.30890 * 120.00183 * 161.71014 * 14 12 11
16 16 Si 1.86803 * 119.99635 * 341.70594 * 14 12 11
17 17 H 1.48499 * 109.47218 * 95.42083 * 16 14 12
18 18 H 1.48506 * 109.47107 * 215.42072 * 16 14 12
19 19 H 1.48499 * 109.47169 * 335.41819 * 16 14 12
20 20 C 1.40912 * 119.76600 * 0.53811 * 11 10 9
21 21 C 1.36427 * 120.18294 * 359.73032 * 20 11 10
22 22 C 1.39135 * 120.43759 * 0.02562 * 21 20 11
23 23 O 1.35619 * 119.88137 * 179.97438 * 22 21 20
24 24 C 1.42898 * 117.00000 * 0.02562 * 23 22 21
25 25 C 1.39207 * 119.04498 * 0.02562 * 8 7 6
26 26 N 1.31813 * 120.65828 * 359.97438 * 25 8 7
27 27 H 1.09006 * 109.47017 * 180.02562 * 1 2 3
28 28 H 1.09004 * 109.47500 * 299.99934 * 1 2 3
29 29 H 1.08999 * 109.47033 * 60.00552 * 1 2 3
30 30 H 1.09006 * 109.46698 * 315.00057 * 3 2 1
31 31 H 1.08995 * 109.47258 * 194.99973 * 3 2 1
32 32 H 1.08001 * 120.37780 * 0.02562 * 6 5 4
33 33 H 1.08001 * 120.80889 * 179.97438 * 7 6 5
34 34 H 1.07997 * 120.21360 * 359.96881 * 10 9 8
35 35 H 0.97004 * 119.99712 * 179.97438 * 15 14 12
36 36 H 1.07994 * 119.90778 * 179.70858 * 20 11 10
37 37 H 1.08001 * 119.77941 * 179.97438 * 21 20 11
38 38 H 1.09002 * 109.47156 * 179.97438 * 24 23 22
39 39 H 1.09000 * 109.47610 * 300.00492 * 24 23 22
40 40 H 1.09010 * 109.47326 * 60.00130 * 24 23 22
41 41 H 1.07996 * 119.66420 * 179.71787 * 25 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 8 1.8853 1.8826 1.3013
5 6 2.7171 1.4141 2.2652
6 6 2.6414 1.9386 3.5504
7 6 3.4919 1.4572 4.5268
8 6 4.4021 0.4526 4.1797
9 6 5.3371 -0.0976 5.1911
10 6 6.1031 0.7575 5.9675
11 6 6.9817 0.2240 6.9271
12 6 7.7632 1.0851 7.7288
13 1 8.0731 2.0462 7.3459
14 6 8.1358 0.6931 9.0186
15 7 9.1285 1.2940 9.6241
16 14 7.2165 -0.6880 9.8771
17 1 7.9412 -1.9678 9.6714
18 1 7.1299 -0.3963 11.3307
19 1 5.8477 -0.7979 9.3119
20 6 7.0836 -1.1728 7.0823
21 6 6.3291 -2.0058 6.3089
22 6 5.4534 -1.4865 5.3606
23 8 4.7091 -2.3249 4.5975
24 6 4.8753 -3.7263 4.8221
25 6 4.4181 -0.0223 2.8712
26 7 3.5892 0.4645 1.9693
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5137 -0.8900
30 1 1.4940 1.9330 -0.7267
31 1 3.0648 1.2338 -0.2660
32 1 1.9259 2.7135 3.7828
33 1 3.4552 1.8467 5.5334
34 1 6.0228 1.8268 5.8391
35 1 9.3866 1.0223 10.5189
36 1 7.7612 -1.5851 7.8153
37 1 6.4127 -3.0754 6.4331
38 1 4.2233 -4.2821 4.1483
39 1 5.9128 -4.0037 4.6355
40 1 4.6163 -3.9621 5.8544
41 1 5.1196 -0.7942 2.5912
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001235954475.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:06:16
Heat of formation + Delta-G solvation = -66.191862 kcal
Electronic energy + Delta-G solvation = -25514.877263 eV
Core-core repulsion = 21746.565632 eV
Total energy + Delta-G solvation = -3768.311631 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.130 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-40.45004 -39.21436 -38.31699 -36.69403 -36.38182 -33.58034 -32.47400 -31.49284
-29.87038 -28.57935 -27.61501 -27.06366 -25.45329 -24.47387 -23.34252 -22.82405
-20.82818 -20.44988 -18.50465 -17.53516 -17.29771 -17.08540 -16.97385 -15.73922
-15.64281 -15.08178 -15.01700 -14.93055 -14.67279 -14.31604 -14.01275 -13.61854
-13.47492 -13.30195 -12.88759 -12.75084 -12.59322 -12.35560 -12.12197 -11.86425
-11.50947 -11.25016 -11.23146 -11.18564 -10.89378 -10.45950 -10.38160 -10.23486
-10.01501 -9.66225 -9.56637 -9.26555 -9.14291 -8.47666 -7.68833 -7.14294
-6.96398 -4.44580 1.37159 1.56436 2.46086 2.54225 3.05595 3.11649
3.16817 3.26843 3.66954 3.93696 4.06589 4.16632 4.40996 4.57511
4.81842 5.09711 5.15983 5.18858 5.26799 5.29602 5.36585 5.44448
5.50232 5.51344 5.58114 5.58354 5.73230 5.87304 5.99130 6.07759
6.28278 6.50036 6.55131 6.63477 6.69466 6.84833 6.86940 7.04539
7.29428 7.38130 7.44914 7.69546 7.82665 8.15865 8.22188 8.33163
8.59325 8.76116 10.06697
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.021612 B = 0.003329 C = 0.003024
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1295.288260 B = 8408.159873 C = 9256.008219
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.382 6.382
3 C 0.226 3.774
4 O -0.329 6.329
5 C 0.302 3.698
6 C -0.190 4.190
7 C -0.039 4.039
8 C -0.092 4.092
9 C -0.040 4.040
10 C -0.161 4.161
11 C 0.072 3.928
12 C -0.448 4.448
13 H 0.091 0.909
14 C 0.084 3.916
15 N -0.811 5.811
16 Si 0.906 3.094
17 H -0.271 1.271
18 H -0.290 1.290
19 H -0.245 1.245
20 C -0.198 4.198
21 C -0.152 4.152
22 C 0.011 3.989
23 O -0.324 6.324
24 C 0.036 3.964
25 C 0.159 3.841
26 N -0.528 5.528
27 H 0.084 0.916
28 H 0.046 0.954
29 H 0.041 0.959
30 H 0.096 0.904
31 H 0.107 0.893
32 H 0.135 0.865
33 H 0.142 0.858
34 H 0.111 0.889
35 H 0.284 0.716
36 H 0.104 0.896
37 H 0.104 0.896
38 H 0.084 0.916
39 H 0.045 0.955
40 H 0.043 0.957
41 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.450 -2.742 -12.029 17.527
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.301 6.301
3 C 0.112 3.888
4 O -0.240 6.240
5 C 0.124 3.876
6 C -0.210 4.210
7 C -0.064 4.064
8 C -0.094 4.094
9 C -0.042 4.042
10 C -0.181 4.181
11 C 0.069 3.931
12 C -0.477 4.477
13 H 0.109 0.891
14 C -0.134 4.134
15 N -0.436 5.436
16 Si 0.733 3.267
17 H -0.198 1.198
18 H -0.217 1.217
19 H -0.168 1.168
20 C -0.218 4.218
21 C -0.171 4.171
22 C -0.032 4.032
23 O -0.239 6.239
24 C -0.060 4.060
25 C 0.003 3.997
26 N -0.250 5.250
27 H 0.103 0.897
28 H 0.064 0.936
29 H 0.060 0.940
30 H 0.114 0.886
31 H 0.124 0.876
32 H 0.153 0.847
33 H 0.160 0.840
34 H 0.129 0.871
35 H 0.095 0.905
36 H 0.122 0.878
37 H 0.122 0.878
38 H 0.103 0.897
39 H 0.064 0.936
40 H 0.062 0.938
41 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -12.476 -2.888 -12.830 18.128
hybrid contribution -0.185 -0.467 1.480 1.562
sum -12.661 -3.355 -11.351 17.332
Atomic orbital electron populations
1.22811 0.81242 1.02795 1.00101 1.88164 1.19952 1.28541 1.93430
1.23986 1.00162 0.82759 0.81857 1.86349 1.56666 1.60197 1.20770
1.19658 0.89273 0.91135 0.87563 1.20919 1.04228 1.04976 0.90906
1.21548 0.91942 0.93712 0.99241 1.19687 0.97584 0.97388 0.94717
1.17558 0.99117 0.89573 0.97907 1.20957 0.99070 0.97439 1.00588
1.17611 0.91115 0.91530 0.92834 1.19349 1.26242 1.04175 0.97965
0.89097 1.26097 0.93046 0.96419 0.97860 1.69723 1.21047 1.38536
1.14257 0.86388 0.82714 0.80331 0.77253 1.19767 1.21746 1.16789
1.20718 1.03863 0.93856 1.03332 1.20438 0.99444 0.98476 0.98735
1.18454 0.98557 0.88568 0.97659 1.85875 1.62942 1.15687 1.59389
1.22770 1.01124 0.81105 1.00983 1.22481 0.93709 0.95709 0.87780
1.67222 1.07370 1.12393 1.37981 0.89722 0.93567 0.94045 0.88594
0.87569 0.84687 0.84031 0.87051 0.90526 0.87799 0.87811 0.89721
0.93632 0.93840 0.82422
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.26 10.89 101.05 1.10 1.36 16
2 O -0.38 -4.97 10.74 -59.04 -0.63 -5.60 16
3 C 0.23 2.59 6.67 101.05 0.67 3.27 16
4 O -0.33 -4.57 10.17 -42.50 -0.43 -5.00 16
5 C 0.30 4.79 7.41 -17.07 -0.13 4.67 16
6 C -0.19 -2.83 10.03 -39.33 -0.39 -3.22 16
7 C -0.04 -0.63 9.67 -38.98 -0.38 -1.01 16
8 C -0.09 -1.67 5.28 -104.75 -0.55 -2.22 16
9 C -0.04 -0.83 5.50 -104.81 -0.58 -1.40 16
10 C -0.16 -3.55 9.27 -38.56 -0.36 -3.91 16
11 C 0.07 1.74 5.10 -106.85 -0.54 1.20 16
12 C -0.45 -11.70 9.55 -37.83 -0.36 -12.06 16
13 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16
14 C 0.08 2.15 5.40 -17.35 -0.09 2.05 16
15 N -0.81 -21.23 13.93 55.54 0.77 -20.46 16
16 Si 0.91 20.19 24.51 -169.99 -4.17 16.03 16
17 H -0.27 -5.86 6.70 56.52 0.38 -5.48 16
18 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16
19 H -0.24 -5.57 6.87 56.52 0.39 -5.18 16
20 C -0.20 -4.58 7.10 -39.22 -0.28 -4.86 16
21 C -0.15 -3.17 8.95 -39.90 -0.36 -3.52 16
22 C 0.01 0.23 6.63 -38.44 -0.25 -0.02 16
23 O -0.32 -5.95 8.84 -18.56 -0.16 -6.12 16
24 C 0.04 0.51 9.80 101.05 0.99 1.50 16
25 C 0.16 2.80 9.95 -17.20 -0.17 2.63 16
26 N -0.53 -8.99 8.81 -13.04 -0.11 -9.10 16
27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
28 H 0.05 0.46 8.03 -51.93 -0.42 0.04 16
29 H 0.04 0.30 8.11 -51.93 -0.42 -0.12 16
30 H 0.10 0.76 8.01 -51.93 -0.42 0.34 16
31 H 0.11 1.24 7.58 -51.93 -0.39 0.85 16
32 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16
33 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16
34 H 0.11 2.32 8.05 -52.49 -0.42 1.90 16
35 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16
36 H 0.10 2.40 4.72 -52.49 -0.25 2.15 16
37 H 0.10 1.88 6.26 -52.49 -0.33 1.55 16
38 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16
39 H 0.05 0.60 7.64 -51.93 -0.40 0.21 16
40 H 0.04 0.59 7.65 -51.92 -0.40 0.20 16
41 H 0.16 2.70 7.69 -52.49 -0.40 2.30 16
LS Contribution 347.37 15.07 5.23 5.23
Total: -1.00 -29.17 347.37 -6.31 -35.48
By element:
Atomic # 1 Polarization: 10.24 SS G_CDS: -5.13 Total: 5.11 kcal
Atomic # 6 Polarization: -13.89 SS G_CDS: -1.68 Total: -15.57 kcal
Atomic # 7 Polarization: -30.22 SS G_CDS: 0.66 Total: -29.57 kcal
Atomic # 8 Polarization: -15.49 SS G_CDS: -1.23 Total: -16.72 kcal
Atomic # 14 Polarization: 20.19 SS G_CDS: -4.17 Total: 16.03 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -29.17 -6.31 -35.48 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001235954475.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.708 kcal
(2) G-P(sol) polarization free energy of solvation -29.170 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.878 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.484 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.192 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds