Wall clock time and date at job start Tue Mar 31 2020 11:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99759 * 2 1 4 4 O 1.42902 * 109.47354 * 74.99548 * 3 2 1 5 5 C 1.35664 * 116.99842 * 74.99882 * 4 3 2 6 6 C 1.39013 * 119.54900 * 179.97438 * 5 4 3 7 7 C 1.38146 * 119.23595 * 180.02562 * 6 5 4 8 8 C 1.39938 * 118.37998 * 359.97438 * 7 6 5 9 9 C 1.48326 * 120.47616 * 179.97438 * 8 7 6 10 10 C 1.38588 * 120.10047 * 309.75511 * 9 8 7 11 11 C 1.40618 * 119.57035 * 179.73075 * 10 9 8 12 12 C 1.41240 * 120.11641 * 180.29186 * 11 10 9 13 13 H 1.07998 * 120.00365 * 330.37157 * 12 11 10 14 14 C 1.39862 * 120.00109 * 150.37702 * 12 11 10 15 15 N 1.30890 * 120.00183 * 161.71014 * 14 12 11 16 16 Si 1.86803 * 119.99635 * 341.70594 * 14 12 11 17 17 H 1.48499 * 109.47218 * 95.42083 * 16 14 12 18 18 H 1.48506 * 109.47107 * 215.42072 * 16 14 12 19 19 H 1.48499 * 109.47169 * 335.41819 * 16 14 12 20 20 C 1.40912 * 119.76600 * 0.53811 * 11 10 9 21 21 C 1.36427 * 120.18294 * 359.73032 * 20 11 10 22 22 C 1.39135 * 120.43759 * 0.02562 * 21 20 11 23 23 O 1.35619 * 119.88137 * 179.97438 * 22 21 20 24 24 C 1.42898 * 117.00000 * 0.02562 * 23 22 21 25 25 C 1.39207 * 119.04498 * 0.02562 * 8 7 6 26 26 N 1.31813 * 120.65828 * 359.97438 * 25 8 7 27 27 H 1.09006 * 109.47017 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47500 * 299.99934 * 1 2 3 29 29 H 1.08999 * 109.47033 * 60.00552 * 1 2 3 30 30 H 1.09006 * 109.46698 * 315.00057 * 3 2 1 31 31 H 1.08995 * 109.47258 * 194.99973 * 3 2 1 32 32 H 1.08001 * 120.37780 * 0.02562 * 6 5 4 33 33 H 1.08001 * 120.80889 * 179.97438 * 7 6 5 34 34 H 1.07997 * 120.21360 * 359.96881 * 10 9 8 35 35 H 0.97004 * 119.99712 * 179.97438 * 15 14 12 36 36 H 1.07994 * 119.90778 * 179.70858 * 20 11 10 37 37 H 1.08001 * 119.77941 * 179.97438 * 21 20 11 38 38 H 1.09002 * 109.47156 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.47610 * 300.00492 * 24 23 22 40 40 H 1.09010 * 109.47326 * 60.00130 * 24 23 22 41 41 H 1.07996 * 119.66420 * 179.71787 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8853 1.8826 1.3013 5 6 2.7171 1.4141 2.2652 6 6 2.6414 1.9386 3.5504 7 6 3.4919 1.4572 4.5268 8 6 4.4021 0.4526 4.1797 9 6 5.3371 -0.0976 5.1911 10 6 6.1031 0.7575 5.9675 11 6 6.9817 0.2240 6.9271 12 6 7.7632 1.0851 7.7288 13 1 8.0731 2.0462 7.3459 14 6 8.1358 0.6931 9.0186 15 7 9.1285 1.2940 9.6241 16 14 7.2165 -0.6880 9.8771 17 1 7.9412 -1.9678 9.6714 18 1 7.1299 -0.3963 11.3307 19 1 5.8477 -0.7979 9.3119 20 6 7.0836 -1.1728 7.0823 21 6 6.3291 -2.0058 6.3089 22 6 5.4534 -1.4865 5.3606 23 8 4.7091 -2.3249 4.5975 24 6 4.8753 -3.7263 4.8221 25 6 4.4181 -0.0223 2.8712 26 7 3.5892 0.4645 1.9693 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.4940 1.9330 -0.7267 31 1 3.0648 1.2338 -0.2660 32 1 1.9259 2.7135 3.7828 33 1 3.4552 1.8467 5.5334 34 1 6.0228 1.8268 5.8391 35 1 9.3866 1.0223 10.5189 36 1 7.7612 -1.5851 7.8153 37 1 6.4127 -3.0754 6.4331 38 1 4.2233 -4.2821 4.1483 39 1 5.9128 -4.0037 4.6355 40 1 4.6163 -3.9621 5.8544 41 1 5.1196 -0.7942 2.5912 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235954475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:16 Heat of formation + Delta-G solvation = -66.191862 kcal Electronic energy + Delta-G solvation = -25514.877263 eV Core-core repulsion = 21746.565632 eV Total energy + Delta-G solvation = -3768.311631 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.45004 -39.21436 -38.31699 -36.69403 -36.38182 -33.58034 -32.47400 -31.49284 -29.87038 -28.57935 -27.61501 -27.06366 -25.45329 -24.47387 -23.34252 -22.82405 -20.82818 -20.44988 -18.50465 -17.53516 -17.29771 -17.08540 -16.97385 -15.73922 -15.64281 -15.08178 -15.01700 -14.93055 -14.67279 -14.31604 -14.01275 -13.61854 -13.47492 -13.30195 -12.88759 -12.75084 -12.59322 -12.35560 -12.12197 -11.86425 -11.50947 -11.25016 -11.23146 -11.18564 -10.89378 -10.45950 -10.38160 -10.23486 -10.01501 -9.66225 -9.56637 -9.26555 -9.14291 -8.47666 -7.68833 -7.14294 -6.96398 -4.44580 1.37159 1.56436 2.46086 2.54225 3.05595 3.11649 3.16817 3.26843 3.66954 3.93696 4.06589 4.16632 4.40996 4.57511 4.81842 5.09711 5.15983 5.18858 5.26799 5.29602 5.36585 5.44448 5.50232 5.51344 5.58114 5.58354 5.73230 5.87304 5.99130 6.07759 6.28278 6.50036 6.55131 6.63477 6.69466 6.84833 6.86940 7.04539 7.29428 7.38130 7.44914 7.69546 7.82665 8.15865 8.22188 8.33163 8.59325 8.76116 10.06697 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.003329 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.288260 B = 8408.159873 C = 9256.008219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.382 6.382 3 C 0.226 3.774 4 O -0.329 6.329 5 C 0.302 3.698 6 C -0.190 4.190 7 C -0.039 4.039 8 C -0.092 4.092 9 C -0.040 4.040 10 C -0.161 4.161 11 C 0.072 3.928 12 C -0.448 4.448 13 H 0.091 0.909 14 C 0.084 3.916 15 N -0.811 5.811 16 Si 0.906 3.094 17 H -0.271 1.271 18 H -0.290 1.290 19 H -0.245 1.245 20 C -0.198 4.198 21 C -0.152 4.152 22 C 0.011 3.989 23 O -0.324 6.324 24 C 0.036 3.964 25 C 0.159 3.841 26 N -0.528 5.528 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.111 0.889 35 H 0.284 0.716 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.450 -2.742 -12.029 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.301 6.301 3 C 0.112 3.888 4 O -0.240 6.240 5 C 0.124 3.876 6 C -0.210 4.210 7 C -0.064 4.064 8 C -0.094 4.094 9 C -0.042 4.042 10 C -0.181 4.181 11 C 0.069 3.931 12 C -0.477 4.477 13 H 0.109 0.891 14 C -0.134 4.134 15 N -0.436 5.436 16 Si 0.733 3.267 17 H -0.198 1.198 18 H -0.217 1.217 19 H -0.168 1.168 20 C -0.218 4.218 21 C -0.171 4.171 22 C -0.032 4.032 23 O -0.239 6.239 24 C -0.060 4.060 25 C 0.003 3.997 26 N -0.250 5.250 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.129 0.871 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.476 -2.888 -12.830 18.128 hybrid contribution -0.185 -0.467 1.480 1.562 sum -12.661 -3.355 -11.351 17.332 Atomic orbital electron populations 1.22811 0.81242 1.02795 1.00101 1.88164 1.19952 1.28541 1.93430 1.23986 1.00162 0.82759 0.81857 1.86349 1.56666 1.60197 1.20770 1.19658 0.89273 0.91135 0.87563 1.20919 1.04228 1.04976 0.90906 1.21548 0.91942 0.93712 0.99241 1.19687 0.97584 0.97388 0.94717 1.17558 0.99117 0.89573 0.97907 1.20957 0.99070 0.97439 1.00588 1.17611 0.91115 0.91530 0.92834 1.19349 1.26242 1.04175 0.97965 0.89097 1.26097 0.93046 0.96419 0.97860 1.69723 1.21047 1.38536 1.14257 0.86388 0.82714 0.80331 0.77253 1.19767 1.21746 1.16789 1.20718 1.03863 0.93856 1.03332 1.20438 0.99444 0.98476 0.98735 1.18454 0.98557 0.88568 0.97659 1.85875 1.62942 1.15687 1.59389 1.22770 1.01124 0.81105 1.00983 1.22481 0.93709 0.95709 0.87780 1.67222 1.07370 1.12393 1.37981 0.89722 0.93567 0.94045 0.88594 0.87569 0.84687 0.84031 0.87051 0.90526 0.87799 0.87811 0.89721 0.93632 0.93840 0.82422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.89 101.05 1.10 1.36 16 2 O -0.38 -4.97 10.74 -59.04 -0.63 -5.60 16 3 C 0.23 2.59 6.67 101.05 0.67 3.27 16 4 O -0.33 -4.57 10.17 -42.50 -0.43 -5.00 16 5 C 0.30 4.79 7.41 -17.07 -0.13 4.67 16 6 C -0.19 -2.83 10.03 -39.33 -0.39 -3.22 16 7 C -0.04 -0.63 9.67 -38.98 -0.38 -1.01 16 8 C -0.09 -1.67 5.28 -104.75 -0.55 -2.22 16 9 C -0.04 -0.83 5.50 -104.81 -0.58 -1.40 16 10 C -0.16 -3.55 9.27 -38.56 -0.36 -3.91 16 11 C 0.07 1.74 5.10 -106.85 -0.54 1.20 16 12 C -0.45 -11.70 9.55 -37.83 -0.36 -12.06 16 13 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 14 C 0.08 2.15 5.40 -17.35 -0.09 2.05 16 15 N -0.81 -21.23 13.93 55.54 0.77 -20.46 16 16 Si 0.91 20.19 24.51 -169.99 -4.17 16.03 16 17 H -0.27 -5.86 6.70 56.52 0.38 -5.48 16 18 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.24 -5.57 6.87 56.52 0.39 -5.18 16 20 C -0.20 -4.58 7.10 -39.22 -0.28 -4.86 16 21 C -0.15 -3.17 8.95 -39.90 -0.36 -3.52 16 22 C 0.01 0.23 6.63 -38.44 -0.25 -0.02 16 23 O -0.32 -5.95 8.84 -18.56 -0.16 -6.12 16 24 C 0.04 0.51 9.80 101.05 0.99 1.50 16 25 C 0.16 2.80 9.95 -17.20 -0.17 2.63 16 26 N -0.53 -8.99 8.81 -13.04 -0.11 -9.10 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.46 8.03 -51.93 -0.42 0.04 16 29 H 0.04 0.30 8.11 -51.93 -0.42 -0.12 16 30 H 0.10 0.76 8.01 -51.93 -0.42 0.34 16 31 H 0.11 1.24 7.58 -51.93 -0.39 0.85 16 32 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.11 2.32 8.05 -52.49 -0.42 1.90 16 35 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 36 H 0.10 2.40 4.72 -52.49 -0.25 2.15 16 37 H 0.10 1.88 6.26 -52.49 -0.33 1.55 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.60 7.64 -51.93 -0.40 0.21 16 40 H 0.04 0.59 7.65 -51.92 -0.40 0.20 16 41 H 0.16 2.70 7.69 -52.49 -0.40 2.30 16 LS Contribution 347.37 15.07 5.23 5.23 Total: -1.00 -29.17 347.37 -6.31 -35.48 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.13 Total: 5.11 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -1.68 Total: -15.57 kcal Atomic # 7 Polarization: -30.22 SS G_CDS: 0.66 Total: -29.57 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -1.23 Total: -16.72 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.17 Total: 16.03 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.17 -6.31 -35.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235954475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.708 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds