Wall clock time and date at job start Tue Mar 31 2020 11:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99759 * 2 1 4 4 O 1.42902 * 109.47354 * 74.99548 * 3 2 1 5 5 C 1.35664 * 116.99842 * 74.99882 * 4 3 2 6 6 C 1.39013 * 119.54900 * 179.97438 * 5 4 3 7 7 C 1.38146 * 119.23595 * 180.02562 * 6 5 4 8 8 C 1.39938 * 118.37998 * 359.97438 * 7 6 5 9 9 C 1.48326 * 120.47616 * 179.97438 * 8 7 6 10 10 C 1.38588 * 120.10047 * 309.75511 * 9 8 7 11 11 C 1.40618 * 119.57035 * 179.73075 * 10 9 8 12 12 C 1.41240 * 120.11641 * 180.29186 * 11 10 9 13 13 H 1.07998 * 120.00365 * 330.37157 * 12 11 10 14 14 C 1.39862 * 120.00109 * 150.37702 * 12 11 10 15 15 N 1.30890 * 120.00183 * 161.71014 * 14 12 11 16 16 Si 1.86803 * 119.99635 * 341.70594 * 14 12 11 17 17 H 1.48499 * 109.47218 * 95.42083 * 16 14 12 18 18 H 1.48506 * 109.47107 * 215.42072 * 16 14 12 19 19 H 1.48499 * 109.47169 * 335.41819 * 16 14 12 20 20 C 1.40912 * 119.76600 * 0.53811 * 11 10 9 21 21 C 1.36427 * 120.18294 * 359.73032 * 20 11 10 22 22 C 1.39135 * 120.43759 * 0.02562 * 21 20 11 23 23 O 1.35619 * 119.88137 * 179.97438 * 22 21 20 24 24 C 1.42898 * 117.00000 * 0.02562 * 23 22 21 25 25 C 1.39207 * 119.04498 * 0.02562 * 8 7 6 26 26 N 1.31813 * 120.65828 * 359.97438 * 25 8 7 27 27 H 1.09006 * 109.47017 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47500 * 299.99934 * 1 2 3 29 29 H 1.08999 * 109.47033 * 60.00552 * 1 2 3 30 30 H 1.09006 * 109.46698 * 315.00057 * 3 2 1 31 31 H 1.08995 * 109.47258 * 194.99973 * 3 2 1 32 32 H 1.08001 * 120.37780 * 0.02562 * 6 5 4 33 33 H 1.08001 * 120.80889 * 179.97438 * 7 6 5 34 34 H 1.07997 * 120.21360 * 359.96881 * 10 9 8 35 35 H 0.97004 * 119.99712 * 179.97438 * 15 14 12 36 36 H 1.07994 * 119.90778 * 179.70858 * 20 11 10 37 37 H 1.08001 * 119.77941 * 179.97438 * 21 20 11 38 38 H 1.09002 * 109.47156 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.47610 * 300.00492 * 24 23 22 40 40 H 1.09010 * 109.47326 * 60.00130 * 24 23 22 41 41 H 1.07996 * 119.66420 * 179.71787 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8853 1.8826 1.3013 5 6 2.7171 1.4141 2.2652 6 6 2.6414 1.9386 3.5504 7 6 3.4919 1.4572 4.5268 8 6 4.4021 0.4526 4.1797 9 6 5.3371 -0.0976 5.1911 10 6 6.1031 0.7575 5.9675 11 6 6.9817 0.2240 6.9271 12 6 7.7632 1.0851 7.7288 13 1 8.0731 2.0462 7.3459 14 6 8.1358 0.6931 9.0186 15 7 9.1285 1.2940 9.6241 16 14 7.2165 -0.6880 9.8771 17 1 7.9412 -1.9678 9.6714 18 1 7.1299 -0.3963 11.3307 19 1 5.8477 -0.7979 9.3119 20 6 7.0836 -1.1728 7.0823 21 6 6.3291 -2.0058 6.3089 22 6 5.4534 -1.4865 5.3606 23 8 4.7091 -2.3249 4.5975 24 6 4.8753 -3.7263 4.8221 25 6 4.4181 -0.0223 2.8712 26 7 3.5892 0.4645 1.9693 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.4940 1.9330 -0.7267 31 1 3.0648 1.2338 -0.2660 32 1 1.9259 2.7135 3.7828 33 1 3.4552 1.8467 5.5334 34 1 6.0228 1.8268 5.8391 35 1 9.3866 1.0223 10.5189 36 1 7.7612 -1.5851 7.8153 37 1 6.4127 -3.0754 6.4331 38 1 4.2233 -4.2821 4.1483 39 1 5.9128 -4.0037 4.6355 40 1 4.6163 -3.9621 5.8544 41 1 5.1196 -0.7942 2.5912 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235954475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:15 Heat of formation + Delta-G solvation = -84.962343 kcal Electronic energy + Delta-G solvation = -25515.691212 eV Core-core repulsion = 21746.565632 eV Total energy + Delta-G solvation = -3769.125580 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.68769 -40.67016 -39.45428 -38.23186 -37.48203 -35.35132 -33.93318 -32.85187 -31.61433 -29.95869 -28.50068 -28.39927 -26.48311 -26.11193 -24.71804 -24.08211 -22.34663 -22.13955 -19.61237 -19.31090 -18.83931 -18.23968 -17.92147 -17.32132 -16.65718 -16.63800 -16.40810 -16.18137 -16.00323 -15.44328 -15.30476 -15.07971 -14.87115 -14.61266 -14.46139 -14.13044 -14.02373 -13.80803 -13.40856 -13.32306 -12.80008 -12.64416 -12.61348 -12.48895 -12.09362 -12.08847 -11.96282 -11.63340 -11.37997 -11.21672 -10.96139 -10.83157 -10.55266 -9.92709 -9.30608 -8.84711 -8.75988 -6.37363 -0.00028 0.29056 0.75114 0.87714 1.27092 1.40851 1.49908 2.06596 2.13396 2.54295 2.69362 2.79150 2.97218 3.35489 3.44457 3.76026 4.02722 4.05984 4.12164 4.21758 4.26222 4.38026 4.41787 4.49717 4.50216 4.52656 4.56202 4.72705 4.77599 4.81963 4.82680 4.92020 4.98418 5.14375 5.23999 5.36192 5.40300 5.57780 5.69853 5.86637 5.91028 6.09411 6.31068 6.33326 6.59395 6.82086 6.87084 6.92848 8.24489 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.003329 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.288260 B = 8408.159873 C = 9256.008219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.409 6.409 3 C 0.219 3.781 4 O -0.328 6.328 5 C 0.300 3.700 6 C -0.184 4.184 7 C -0.039 4.039 8 C -0.115 4.115 9 C -0.042 4.042 10 C -0.164 4.164 11 C 0.052 3.948 12 C -0.483 4.483 13 H 0.057 0.943 14 C 0.048 3.952 15 N -0.856 5.856 16 Si 0.959 3.041 17 H -0.258 1.258 18 H -0.280 1.280 19 H -0.252 1.252 20 C -0.207 4.207 21 C -0.157 4.157 22 C 0.030 3.970 23 O -0.331 6.331 24 C 0.024 3.976 25 C 0.157 3.843 26 N -0.537 5.537 27 H 0.092 0.908 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.137 0.863 31 H 0.099 0.901 32 H 0.165 0.835 33 H 0.152 0.848 34 H 0.113 0.887 35 H 0.291 0.709 36 H 0.102 0.898 37 H 0.136 0.864 38 H 0.114 0.886 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.115 -4.346 -13.584 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.328 6.328 3 C 0.106 3.894 4 O -0.238 6.238 5 C 0.122 3.878 6 C -0.204 4.204 7 C -0.064 4.064 8 C -0.117 4.117 9 C -0.043 4.043 10 C -0.183 4.183 11 C 0.049 3.951 12 C -0.513 4.513 13 H 0.075 0.925 14 C -0.166 4.166 15 N -0.483 5.483 16 Si 0.783 3.217 17 H -0.183 1.183 18 H -0.207 1.207 19 H -0.176 1.176 20 C -0.226 4.226 21 C -0.176 4.176 22 C -0.014 4.014 23 O -0.246 6.246 24 C -0.071 4.071 25 C 0.001 3.999 26 N -0.259 5.259 27 H 0.110 0.890 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.154 0.846 31 H 0.117 0.883 32 H 0.182 0.818 33 H 0.170 0.830 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.153 0.847 38 H 0.132 0.868 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.153 -4.504 -14.409 21.390 hybrid contribution 0.407 -0.040 1.615 1.666 sum -14.746 -4.545 -12.794 20.045 Atomic orbital electron populations 1.22984 0.79601 1.03701 1.01068 1.88123 1.21870 1.29394 1.93447 1.24346 1.00617 0.83182 0.81247 1.86374 1.55892 1.60123 1.21406 1.19973 0.88876 0.90501 0.88485 1.21195 1.04011 1.04999 0.90168 1.21710 0.91570 0.92962 1.00166 1.19608 0.98512 0.99041 0.94546 1.17748 0.98878 0.89856 0.97841 1.21049 0.98878 0.98013 1.00401 1.17710 0.91731 0.92152 0.93486 1.19307 1.28863 1.03720 0.99387 0.92505 1.26732 0.93446 0.98443 0.97964 1.69761 1.22677 1.40720 1.15147 0.85582 0.81062 0.78445 0.76625 1.18308 1.20662 1.17592 1.20801 1.04393 0.93530 1.03913 1.20727 0.98825 0.99945 0.98091 1.18666 0.97230 0.89074 0.96456 1.85896 1.62224 1.17717 1.58766 1.23143 1.02766 0.78701 1.02472 1.22427 0.93960 0.95855 0.87649 1.67247 1.07753 1.13080 1.37860 0.88990 0.94185 0.91426 0.84588 0.88283 0.81786 0.83041 0.86874 0.89832 0.87980 0.84660 0.86787 0.92510 0.92986 0.82520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.89 113.37 1.23 1.60 16 2 O -0.41 -9.71 10.74 -126.21 -1.36 -11.06 16 3 C 0.22 4.47 6.67 113.37 0.76 5.22 16 4 O -0.33 -8.24 10.17 -67.03 -0.68 -8.92 16 5 C 0.30 8.90 7.41 84.81 0.63 9.52 16 6 C -0.18 -5.03 10.03 22.43 0.22 -4.81 16 7 C -0.04 -1.20 9.67 22.66 0.22 -0.98 16 8 C -0.11 -4.07 5.28 -19.95 -0.11 -4.17 16 9 C -0.04 -1.69 5.50 -19.98 -0.11 -1.80 16 10 C -0.16 -7.36 9.27 22.93 0.21 -7.14 16 11 C 0.05 2.56 5.10 -21.31 -0.11 2.45 16 12 C -0.48 -26.59 9.55 23.40 0.22 -26.36 16 13 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 14 C 0.05 2.52 5.40 85.23 0.46 2.98 16 15 N -0.86 -46.82 13.93 21.81 0.30 -46.52 16 16 Si 0.96 41.97 24.51 68.60 1.68 43.65 16 17 H -0.26 -10.58 6.70 99.48 0.67 -9.91 16 18 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 19 H -0.25 -11.20 6.87 99.48 0.68 -10.52 16 20 C -0.21 -9.47 7.10 22.50 0.16 -9.31 16 21 C -0.16 -6.23 8.95 22.06 0.20 -6.03 16 22 C 0.03 1.18 6.63 23.01 0.15 1.33 16 23 O -0.33 -11.26 8.84 -89.31 -0.79 -12.05 16 24 C 0.02 0.59 9.80 113.37 1.11 1.70 16 25 C 0.16 5.34 9.95 84.93 0.84 6.18 16 26 N -0.54 -17.47 8.81 -308.04 -2.71 -20.18 16 27 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.04 0.69 8.03 -2.39 -0.02 0.67 16 29 H 0.07 0.74 8.11 -2.39 -0.02 0.72 16 30 H 0.14 1.65 8.01 -2.38 -0.02 1.63 16 31 H 0.10 2.14 7.58 -2.39 -0.02 2.12 16 32 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 33 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.11 4.89 8.05 -2.91 -0.02 4.87 16 35 H 0.29 14.36 8.30 -92.71 -0.77 13.59 16 36 H 0.10 4.66 4.72 -2.91 -0.01 4.64 16 37 H 0.14 4.43 6.26 -2.91 -0.02 4.41 16 38 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.06 1.29 7.64 -2.39 -0.02 1.27 16 40 H 0.05 1.21 7.65 -2.38 -0.02 1.19 16 41 H 0.16 5.22 7.69 -2.91 -0.02 5.20 16 Total: -1.00 -64.74 347.37 3.53 -61.20 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.99 Total: 23.50 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 6.10 Total: -29.62 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -2.41 Total: -66.70 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -2.83 Total: -32.04 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.68 Total: 43.65 kcal Total: -64.74 3.53 -61.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235954475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.760 kcal (2) G-P(sol) polarization free energy of solvation -64.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds