Wall clock time and date at job start Tue Mar 31 2020 10:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35965 * 117.00181 * 2 1 4 4 C 1.38667 * 119.94856 * 0.02562 * 3 2 1 5 5 C 1.38005 * 120.11790 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.98872 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.46751 * 258.91095 * 6 5 4 8 8 H 1.08003 * 120.00193 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99847 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00162 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00087 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47167 * 60.00024 * 11 9 7 13 13 H 1.48506 * 109.47623 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47424 * 300.00113 * 11 9 7 15 15 C 1.39359 * 120.02455 * 359.97438 * 5 4 3 16 16 C 1.48370 * 120.04465 * 179.97438 * 15 5 4 17 17 C 1.39381 * 120.51130 * 56.75608 * 16 15 5 18 18 N 1.31707 * 120.71826 * 179.97438 * 17 16 15 19 19 C 1.31878 * 121.90928 * 0.02562 * 18 17 16 20 20 C 1.38788 * 120.95066 * 359.97422 * 19 18 17 21 21 O 1.35919 * 120.41201 * 180.02562 * 20 19 18 22 22 C 1.38923 * 119.17682 * 359.76877 * 20 19 18 23 23 C 1.39349 * 119.90802 * 359.97438 * 15 5 4 24 24 C 1.38334 * 119.87605 * 359.75136 * 23 15 5 25 25 O 1.35998 * 120.01359 * 180.27304 * 24 23 15 26 26 C 1.42900 * 117.00151 * 0.24601 * 25 24 23 27 27 H 1.09004 * 109.47243 * 299.99944 * 1 2 3 28 28 H 1.09002 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47262 * 59.99605 * 1 2 3 30 30 H 1.07996 * 119.94092 * 0.02562 * 4 3 2 31 31 H 1.09006 * 109.46721 * 18.90619 * 6 5 4 32 32 H 1.08989 * 109.47173 * 138.90578 * 6 5 4 33 33 H 0.97002 * 120.00590 * 180.02562 * 10 9 7 34 34 H 1.07998 * 119.64389 * 359.97438 * 17 16 15 35 35 H 1.08000 * 119.52603 * 180.02562 * 19 18 17 36 36 H 0.96703 * 114.00309 * 90.00249 * 21 20 19 37 37 H 1.08006 * 120.86920 * 180.24917 * 22 20 19 38 38 H 1.08001 * 120.06540 * 179.97438 * 23 15 5 39 39 H 1.08994 * 109.47229 * 300.00295 * 26 25 24 40 40 H 1.09002 * 109.46814 * 60.00502 * 26 25 24 41 41 H 1.09000 * 109.47278 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2901 2.3737 0.0005 5 6 1.9130 3.6052 0.0000 6 6 1.0883 4.8665 0.0000 7 6 1.0417 5.4361 -1.3944 8 1 1.5579 4.9351 -2.2000 9 6 0.3399 6.5968 -1.6418 10 7 -0.2892 7.2066 -0.6611 11 14 0.2826 7.3032 -3.3701 12 1 -0.3291 6.3111 -4.2904 13 1 -0.5302 8.5461 -3.3703 14 1 1.6620 7.6145 -3.8237 15 6 3.3044 3.6828 -0.0005 16 6 3.9746 5.0065 -0.0017 17 6 3.7073 5.9359 1.0021 18 7 4.3003 7.1119 1.0053 19 6 5.1630 7.4602 0.0706 20 6 5.4838 6.5922 -0.9637 21 8 6.3749 6.9623 -1.9211 22 6 4.8870 5.3384 -1.0055 23 6 4.0654 2.5154 0.0000 24 6 3.4369 1.2832 0.0063 25 8 4.1769 0.1421 0.0124 26 6 5.5981 0.2906 0.0175 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 0.2117 2.3152 0.0014 31 1 0.0758 4.6386 0.3335 32 1 1.5379 5.5945 0.6751 33 1 -0.7833 8.0230 -0.8351 34 1 3.0063 5.6891 1.7857 35 1 5.6271 8.4346 0.1110 36 1 7.2918 6.7357 -1.7137 37 1 5.1199 4.6399 -1.7957 38 1 5.1439 2.5726 -0.0008 39 1 5.9096 0.8368 -0.8728 40 1 5.9026 0.8419 0.9071 41 1 6.0663 -0.6938 0.0217 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236580847.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:35 Heat of formation + Delta-G solvation = -56.631493 kcal Electronic energy + Delta-G solvation = -26295.696820 eV Core-core repulsion = 22527.799758 eV Total energy + Delta-G solvation = -3767.897062 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.46866 -39.75395 -38.17788 -37.39906 -36.53684 -33.22900 -32.47296 -31.00375 -30.06890 -28.88919 -27.86005 -27.06920 -26.13822 -23.68065 -23.32782 -22.42894 -21.27427 -20.42914 -18.38436 -17.69077 -16.73080 -16.66531 -16.53489 -16.25478 -15.90504 -15.77946 -15.07416 -15.04409 -14.63025 -14.27617 -14.19782 -13.58122 -13.21539 -12.90046 -12.71526 -12.59900 -12.49007 -12.19056 -12.06034 -11.74683 -11.34179 -11.28013 -11.18459 -10.99183 -10.94295 -10.66308 -10.56869 -10.32540 -9.65836 -9.47698 -9.24220 -9.01248 -8.48445 -8.37243 -8.14011 -7.18379 -6.06463 -4.09785 1.23026 1.55762 1.81429 2.00127 3.31021 3.35220 3.39192 3.49937 3.53570 3.96975 4.23034 4.29163 4.45272 4.85326 5.04379 5.14316 5.18598 5.20871 5.21987 5.28166 5.29835 5.36799 5.38858 5.50503 5.58265 5.66417 5.70662 5.78256 5.92660 5.94444 6.08425 6.36357 6.42552 6.59841 6.76418 6.90825 6.97668 7.11103 7.29539 7.45135 7.66935 7.72420 7.87271 7.88378 8.25725 8.37955 8.92864 9.53971 11.02809 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.009765 B = 0.006005 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.616397 B = 4661.274598 C = 6570.050932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.106 3.894 4 C -0.176 4.176 5 C -0.008 4.008 6 C 0.044 3.956 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.064 3.936 10 N -0.889 5.889 11 Si 0.888 3.112 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.276 1.276 15 C -0.061 4.061 16 C -0.038 4.038 17 C 0.123 3.877 18 N -0.464 5.464 19 C 0.068 3.932 20 C 0.048 3.952 21 O -0.492 6.492 22 C -0.092 4.092 23 C -0.153 4.153 24 C 0.069 3.931 25 O -0.312 6.312 26 C 0.029 3.971 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.136 0.864 31 H 0.029 0.971 32 H 0.041 0.959 33 H 0.263 0.737 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.383 0.617 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.871 -9.843 2.788 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.060 3.940 4 C -0.195 4.195 5 C -0.008 4.008 6 C 0.008 3.992 7 C -0.547 4.547 8 H 0.072 0.928 9 C -0.138 4.138 10 N -0.527 5.527 11 Si 0.715 3.285 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.201 1.201 15 C -0.062 4.062 16 C -0.040 4.040 17 C -0.034 4.034 18 N -0.173 5.173 19 C -0.089 4.089 20 C 0.002 3.998 21 O -0.300 6.300 22 C -0.118 4.118 23 C -0.172 4.172 24 C 0.024 3.976 25 O -0.226 6.226 26 C -0.066 4.066 27 H 0.073 0.927 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.154 0.846 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.176 0.824 35 H 0.170 0.830 36 H 0.238 0.762 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.095 -9.254 3.188 14.061 hybrid contribution 0.399 0.068 -1.695 1.742 sum 10.494 -9.186 1.493 14.026 Atomic orbital electron populations 1.23029 0.78862 1.03274 1.01701 1.86086 1.20838 1.26442 1.89240 1.18333 0.88934 0.84992 1.01708 1.20991 1.00032 0.90604 1.07877 1.20495 0.92542 0.96563 0.91240 1.18512 0.94078 0.88245 0.98369 1.20866 1.32094 1.08408 0.93291 0.92791 1.24918 0.95304 0.96671 0.96877 1.69917 1.32886 1.18600 1.31310 0.86708 0.78308 0.78517 0.84940 1.20163 1.21121 1.20106 1.18115 0.92569 0.90417 1.05138 1.19423 0.95071 0.94670 0.94876 1.22839 0.95499 0.87796 0.97286 1.67621 1.06869 1.17490 1.25329 1.22972 0.96335 0.99649 0.89952 1.19343 0.96087 0.93592 0.90804 1.84897 1.19295 1.82764 1.43048 1.21829 0.96626 0.95689 0.97637 1.20904 0.99354 0.90405 1.06501 1.17857 0.88005 0.85493 1.06224 1.86120 1.18012 1.28459 1.90020 1.22953 0.79575 1.03139 1.00964 0.92671 0.88744 0.92515 0.84635 0.95291 0.94128 0.92754 0.82390 0.83035 0.76249 0.84891 0.85413 0.93117 0.93083 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.31 -5.15 10.27 -34.29 -0.35 -5.51 16 3 C 0.11 1.88 6.70 -39.05 -0.26 1.62 16 4 C -0.18 -3.31 8.64 -39.51 -0.34 -3.65 16 5 C -0.01 -0.17 5.08 -104.29 -0.53 -0.70 16 6 C 0.04 1.09 4.57 -29.04 -0.13 0.95 16 7 C -0.51 -13.85 8.80 -34.44 -0.30 -14.16 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 11 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C -0.06 -1.15 5.41 -104.90 -0.57 -1.72 16 16 C -0.04 -0.72 4.66 -104.77 -0.49 -1.20 16 17 C 0.12 2.38 9.04 -17.18 -0.16 2.22 16 18 N -0.46 -8.89 10.34 -12.84 -0.13 -9.02 16 19 C 0.07 1.16 11.13 -17.33 -0.19 0.97 16 20 C 0.05 0.79 6.73 -39.12 -0.26 0.52 16 21 O -0.49 -6.80 13.52 -19.48 -0.26 -7.07 16 22 C -0.09 -1.59 9.73 -38.80 -0.38 -1.96 16 23 C -0.15 -2.49 8.62 -39.13 -0.34 -2.83 16 24 C 0.07 1.17 6.69 -39.17 -0.26 0.91 16 25 O -0.31 -4.86 10.27 -34.39 -0.35 -5.22 16 26 C 0.03 0.31 9.81 101.05 0.99 1.30 16 27 H 0.05 0.64 7.65 -51.93 -0.40 0.24 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 30 H 0.14 2.37 6.24 -52.49 -0.33 2.05 16 31 H 0.03 0.74 7.99 -51.93 -0.41 0.32 16 32 H 0.04 1.03 4.92 -51.93 -0.26 0.77 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 34 H 0.16 2.96 7.06 -52.49 -0.37 2.59 16 35 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.38 2.99 9.06 45.56 0.41 3.40 16 37 H 0.13 2.09 8.06 -52.48 -0.42 1.67 16 38 H 0.13 1.72 6.29 -52.49 -0.33 1.39 16 39 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 40 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 350.10 15.07 5.28 5.28 Total: -1.00 -33.71 350.10 -6.55 -40.25 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -4.11 Total: 4.19 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -2.33 Total: -14.68 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.60 Total: -34.19 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.97 Total: -17.79 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.71 -6.55 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236580847.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.377 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds