Wall clock time and date at job start Tue Mar 31 2020 10:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35991 * 117.00049 * 2 1 4 4 C 1.38258 * 119.97174 * 359.97438 * 3 2 1 5 5 C 1.39709 * 119.94768 * 180.27607 * 4 3 2 6 6 C 1.47842 * 120.05331 * 179.70288 * 5 4 3 7 7 C 1.40345 * 120.35091 * 179.72461 * 6 5 4 8 8 C 1.36616 * 118.60395 * 179.77681 * 7 6 5 9 9 C 1.40919 * 119.26234 * 0.49346 * 8 7 6 10 10 C 1.40911 * 119.67716 * 179.71861 * 9 8 7 11 11 H 1.08003 * 120.00096 * 353.68447 * 10 9 8 12 12 C 1.40060 * 119.99935 * 173.67640 * 10 9 8 13 13 N 1.30735 * 119.99980 * 6.31050 * 12 10 9 14 14 Si 1.86801 * 119.99830 * 186.30914 * 12 10 9 15 15 H 1.48496 * 109.47268 * 94.98836 * 14 12 10 16 16 H 1.48503 * 109.46841 * 214.98633 * 14 12 10 17 17 H 1.48491 * 109.47352 * 334.98468 * 14 12 10 18 18 N 1.33812 * 120.64596 * 359.75109 * 9 8 7 19 19 C 1.31166 * 121.50603 * 359.97438 * 18 9 8 20 20 C 1.39711 * 119.89615 * 359.45161 * 5 4 3 21 21 C 1.38258 * 119.94204 * 0.59229 * 20 5 4 22 22 O 1.35989 * 119.96906 * 179.67872 * 21 20 5 23 23 C 1.42898 * 117.00291 * 359.97438 * 22 21 20 24 24 C 1.39264 * 119.97854 * 180.02562 * 3 2 1 25 25 O 1.35966 * 119.94562 * 359.97438 * 24 3 2 26 26 C 1.42898 * 116.99986 * 90.00100 * 25 24 3 27 27 H 1.09003 * 109.46848 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47150 * 299.99929 * 1 2 3 29 29 H 1.08997 * 109.47221 * 60.00020 * 1 2 3 30 30 H 1.08006 * 120.02923 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.70003 * 0.02562 * 7 6 5 32 32 H 1.07995 * 120.37060 * 180.24225 * 8 7 6 33 33 H 0.97009 * 120.00181 * 179.97438 * 13 12 10 34 34 H 1.08006 * 119.65877 * 180.02562 * 19 18 9 35 35 H 1.07993 * 120.02761 * 180.27894 * 20 5 4 36 36 H 1.08997 * 109.47009 * 299.99874 * 23 22 21 37 37 H 1.09002 * 109.47215 * 60.00014 * 23 22 21 38 38 H 1.09002 * 109.46975 * 179.97438 * 23 22 21 39 39 H 1.09001 * 109.47254 * 300.00056 * 26 25 24 40 40 H 1.09008 * 109.46999 * 60.00063 * 26 25 24 41 41 H 1.09001 * 109.47263 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2928 2.3708 -0.0005 5 6 1.9276 3.6154 -0.0064 6 6 1.1240 4.8563 -0.0136 7 6 1.7552 6.1099 -0.0137 8 6 0.9781 7.2334 -0.0251 9 6 -0.4248 7.1007 -0.0259 10 6 -1.2347 8.2537 -0.0316 11 1 -0.7844 9.2304 0.0675 12 6 -2.6236 8.1333 -0.1660 13 7 -3.1806 6.9505 -0.1621 14 14 -3.6802 9.6627 -0.3509 15 1 -3.9196 9.9277 -1.7923 16 1 -4.9798 9.4525 0.3363 17 1 -2.9813 10.8236 0.2564 18 7 -0.9954 5.8903 -0.0205 19 6 -0.2762 4.7934 -0.0149 20 6 3.3229 3.6854 -0.0001 21 6 4.0722 2.5235 -0.0004 22 8 5.4304 2.5910 -0.0009 23 6 6.0152 3.8949 -0.0015 24 6 3.4371 1.2840 -0.0005 25 8 4.1761 0.1427 -0.0005 26 6 4.5282 -0.4021 -1.2738 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2142 2.3143 -0.0005 31 1 2.8326 6.1847 -0.0089 32 1 1.4338 8.2125 -0.0294 33 1 -4.1427 6.8671 -0.2548 34 1 -0.7680 3.8319 -0.0111 35 1 3.8158 4.6463 0.0000 36 1 5.6947 4.4363 -0.8916 37 1 5.6953 4.4370 0.8884 38 1 7.1016 3.8058 -0.0014 39 1 3.6218 -0.6401 -1.8304 40 1 5.1160 0.3274 -1.8312 41 1 5.1153 -1.3094 -1.1310 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239641988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:06 Heat of formation + Delta-G solvation = -51.364168 kcal Electronic energy + Delta-G solvation = -25646.081538 eV Core-core repulsion = 21878.412885 eV Total energy + Delta-G solvation = -3767.668654 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.41369 -38.75357 -38.45664 -37.40870 -35.98107 -33.87495 -31.42922 -30.83738 -29.25321 -28.96433 -27.64611 -26.93229 -26.65836 -24.96818 -22.56263 -22.42767 -20.92526 -20.59286 -18.27203 -17.81528 -17.02108 -16.71548 -16.20420 -15.96096 -15.70910 -15.32700 -14.91780 -14.75597 -14.67465 -14.34219 -14.12952 -13.87878 -13.27878 -12.72740 -12.67247 -12.63386 -12.37527 -12.13350 -11.79768 -11.61891 -11.46079 -11.40550 -11.34646 -11.12854 -11.08607 -10.82543 -10.52630 -10.45209 -10.16536 -9.63420 -9.56222 -8.59755 -8.26167 -7.84314 -7.81050 -7.23032 -6.71958 -4.76279 1.34315 1.79613 2.61284 2.91642 2.92526 2.96004 3.00862 3.07821 3.71311 3.85597 3.93210 4.30614 4.59303 5.12118 5.18859 5.25682 5.33367 5.36121 5.40432 5.46322 5.51790 5.56397 5.58265 5.63663 5.66534 5.68871 5.75438 5.90021 5.94888 5.99087 6.45983 6.52046 6.56332 6.60564 6.75781 6.81503 6.90403 7.14867 7.31581 7.41301 7.50520 7.62118 7.77297 7.93387 8.06107 8.32703 8.62225 9.82439 9.98308 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.019713 B = 0.003298 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.023008 B = 8489.163481 C = 9797.523270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.160 3.840 4 C -0.260 4.260 5 C 0.108 3.892 6 C -0.286 4.286 7 C -0.030 4.030 8 C -0.271 4.271 9 C 0.251 3.749 10 C -0.399 4.399 11 H 0.090 0.910 12 C 0.061 3.939 13 N -0.694 5.694 14 Si 0.914 3.086 15 H -0.266 1.266 16 H -0.273 1.273 17 H -0.258 1.258 18 N -0.489 5.489 19 C 0.166 3.834 20 C -0.261 4.261 21 C 0.158 3.842 22 O -0.310 6.310 23 C 0.027 3.973 24 C -0.019 4.019 25 O -0.312 6.312 26 C 0.034 3.966 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.133 0.867 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.279 0.721 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.611 -7.003 -1.647 10.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.114 3.886 4 C -0.279 4.279 5 C 0.106 3.894 6 C -0.291 4.291 7 C -0.052 4.052 8 C -0.293 4.293 9 C 0.129 3.871 10 C -0.428 4.428 11 H 0.108 0.892 12 C -0.167 4.167 13 N -0.314 5.314 14 Si 0.737 3.263 15 H -0.191 1.191 16 H -0.197 1.197 17 H -0.182 1.182 18 N -0.201 5.201 19 C -0.004 4.004 20 C -0.281 4.281 21 C 0.112 3.888 22 O -0.223 6.223 23 C -0.068 4.068 24 C -0.065 4.065 25 O -0.228 6.228 26 C -0.061 4.061 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.150 0.850 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.742 -7.503 -1.502 10.198 hybrid contribution 0.165 1.195 -0.371 1.262 sum 6.906 -6.309 -1.873 9.540 Atomic orbital electron populations 1.23075 0.78509 1.03470 1.01900 1.86076 1.21141 1.26531 1.88504 1.18793 0.90388 0.84544 0.94888 1.21060 1.00023 0.90867 1.15922 1.18408 0.91277 0.92165 0.87531 1.18974 0.94246 0.91036 1.24865 1.20640 0.97525 0.92177 0.94894 1.21439 0.95240 0.97227 1.15387 1.18689 0.89030 0.91546 0.87875 1.19853 0.91274 0.93651 1.38047 0.89175 1.26234 0.99043 0.97587 0.93838 1.70125 1.12070 1.23969 1.25188 0.86190 0.79202 0.81351 0.79535 1.19132 1.19749 1.18203 1.68817 1.36547 0.96827 1.17899 1.22770 0.89188 0.97265 0.91211 1.21029 0.94195 0.96582 1.16261 1.18795 0.82217 0.92668 0.95097 1.86078 1.17188 1.30410 1.88579 1.23048 0.98511 0.83605 1.01671 1.16773 0.86126 0.84183 1.19382 1.86136 1.70547 1.38148 1.27986 1.22914 0.99142 0.98015 0.85995 0.88541 0.92356 0.92481 0.84955 0.88357 0.87971 0.90967 0.86025 0.85268 0.92649 0.92527 0.88563 0.94199 0.94248 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.98 10.27 -34.41 -0.35 -5.34 16 3 C 0.16 2.84 6.69 -39.19 -0.26 2.58 16 4 C -0.26 -4.69 8.42 -39.03 -0.33 -5.02 16 5 C 0.11 2.09 5.88 -104.87 -0.62 1.48 16 6 C -0.29 -6.18 5.92 -104.45 -0.62 -6.80 16 7 C -0.03 -0.63 9.46 -39.38 -0.37 -1.00 16 8 C -0.27 -6.21 9.76 -39.15 -0.38 -6.59 16 9 C 0.25 6.42 6.54 -84.98 -0.56 5.87 16 10 C -0.40 -9.86 9.11 -37.89 -0.35 -10.21 16 11 H 0.09 2.05 7.86 -52.48 -0.41 1.64 16 12 C 0.06 1.43 5.49 -17.34 -0.10 1.34 16 13 N -0.69 -17.11 11.47 55.55 0.64 -16.47 16 14 Si 0.91 17.02 29.56 -169.99 -5.03 12.00 16 15 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 16 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 17 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 18 N -0.49 -12.72 7.86 -10.83 -0.09 -12.80 16 19 C 0.17 3.83 10.60 -17.11 -0.18 3.65 16 20 C -0.26 -4.66 8.42 -39.02 -0.33 -4.99 16 21 C 0.16 2.79 6.69 -39.19 -0.26 2.53 16 22 O -0.31 -4.90 10.27 -34.40 -0.35 -5.25 16 23 C 0.03 0.31 9.81 101.05 0.99 1.30 16 24 C -0.02 -0.36 5.76 -38.82 -0.22 -0.58 16 25 O -0.31 -5.51 9.96 -44.99 -0.45 -5.96 16 26 C 0.03 0.47 11.13 101.05 1.12 1.59 16 27 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 29 H 0.06 0.65 7.66 -51.93 -0.40 0.26 16 30 H 0.13 2.22 4.43 -52.48 -0.23 1.98 16 31 H 0.10 1.80 6.29 -52.48 -0.33 1.47 16 32 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.28 6.15 8.29 -40.82 -0.34 5.81 16 34 H 0.12 2.51 6.20 -52.48 -0.33 2.19 16 35 H 0.13 2.09 4.46 -52.49 -0.23 1.86 16 36 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 37 H 0.06 0.62 7.66 -51.93 -0.40 0.23 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -29.73 347.14 -6.66 -36.39 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.80 Total: 5.76 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -1.46 Total: -13.55 kcal Atomic # 7 Polarization: -29.83 SS G_CDS: 0.55 Total: -29.28 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -1.16 Total: -16.55 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.73 -6.66 -36.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239641988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.978 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds