Wall clock time and date at job start Tue Mar 31 2020 10:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35991 * 117.00049 * 2 1 4 4 C 1.38258 * 119.97174 * 359.97438 * 3 2 1 5 5 C 1.39709 * 119.94768 * 180.27607 * 4 3 2 6 6 C 1.47842 * 120.05331 * 179.70288 * 5 4 3 7 7 C 1.40345 * 120.35091 * 179.72461 * 6 5 4 8 8 C 1.36616 * 118.60395 * 179.77681 * 7 6 5 9 9 C 1.40919 * 119.26234 * 0.49346 * 8 7 6 10 10 C 1.40911 * 119.67716 * 179.71861 * 9 8 7 11 11 H 1.08003 * 120.00096 * 353.68447 * 10 9 8 12 12 C 1.40060 * 119.99935 * 173.67640 * 10 9 8 13 13 N 1.30735 * 119.99980 * 6.31050 * 12 10 9 14 14 Si 1.86801 * 119.99830 * 186.30914 * 12 10 9 15 15 H 1.48496 * 109.47268 * 94.98836 * 14 12 10 16 16 H 1.48503 * 109.46841 * 214.98633 * 14 12 10 17 17 H 1.48491 * 109.47352 * 334.98468 * 14 12 10 18 18 N 1.33812 * 120.64596 * 359.75109 * 9 8 7 19 19 C 1.31166 * 121.50603 * 359.97438 * 18 9 8 20 20 C 1.39711 * 119.89615 * 359.45161 * 5 4 3 21 21 C 1.38258 * 119.94204 * 0.59229 * 20 5 4 22 22 O 1.35989 * 119.96906 * 179.67872 * 21 20 5 23 23 C 1.42898 * 117.00291 * 359.97438 * 22 21 20 24 24 C 1.39264 * 119.97854 * 180.02562 * 3 2 1 25 25 O 1.35966 * 119.94562 * 359.97438 * 24 3 2 26 26 C 1.42898 * 116.99986 * 90.00100 * 25 24 3 27 27 H 1.09003 * 109.46848 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47150 * 299.99929 * 1 2 3 29 29 H 1.08997 * 109.47221 * 60.00020 * 1 2 3 30 30 H 1.08006 * 120.02923 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.70003 * 0.02562 * 7 6 5 32 32 H 1.07995 * 120.37060 * 180.24225 * 8 7 6 33 33 H 0.97009 * 120.00181 * 179.97438 * 13 12 10 34 34 H 1.08006 * 119.65877 * 180.02562 * 19 18 9 35 35 H 1.07993 * 120.02761 * 180.27894 * 20 5 4 36 36 H 1.08997 * 109.47009 * 299.99874 * 23 22 21 37 37 H 1.09002 * 109.47215 * 60.00014 * 23 22 21 38 38 H 1.09002 * 109.46975 * 179.97438 * 23 22 21 39 39 H 1.09001 * 109.47254 * 300.00056 * 26 25 24 40 40 H 1.09008 * 109.46999 * 60.00063 * 26 25 24 41 41 H 1.09001 * 109.47263 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2928 2.3708 -0.0005 5 6 1.9276 3.6154 -0.0064 6 6 1.1240 4.8563 -0.0136 7 6 1.7552 6.1099 -0.0137 8 6 0.9781 7.2334 -0.0251 9 6 -0.4248 7.1007 -0.0259 10 6 -1.2347 8.2537 -0.0316 11 1 -0.7844 9.2304 0.0675 12 6 -2.6236 8.1333 -0.1660 13 7 -3.1806 6.9505 -0.1621 14 14 -3.6802 9.6627 -0.3509 15 1 -3.9196 9.9277 -1.7923 16 1 -4.9798 9.4525 0.3363 17 1 -2.9813 10.8236 0.2564 18 7 -0.9954 5.8903 -0.0205 19 6 -0.2762 4.7934 -0.0149 20 6 3.3229 3.6854 -0.0001 21 6 4.0722 2.5235 -0.0004 22 8 5.4304 2.5910 -0.0009 23 6 6.0152 3.8949 -0.0015 24 6 3.4371 1.2840 -0.0005 25 8 4.1761 0.1427 -0.0005 26 6 4.5282 -0.4021 -1.2738 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2142 2.3143 -0.0005 31 1 2.8326 6.1847 -0.0089 32 1 1.4338 8.2125 -0.0294 33 1 -4.1427 6.8671 -0.2548 34 1 -0.7680 3.8319 -0.0111 35 1 3.8158 4.6463 0.0000 36 1 5.6947 4.4363 -0.8916 37 1 5.6953 4.4370 0.8884 38 1 7.1016 3.8058 -0.0014 39 1 3.6218 -0.6401 -1.8304 40 1 5.1160 0.3274 -1.8312 41 1 5.1153 -1.3094 -1.1310 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239641988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:05 Heat of formation + Delta-G solvation = -68.003043 kcal Electronic energy + Delta-G solvation = -25646.803054 eV Core-core repulsion = 21878.412885 eV Total energy + Delta-G solvation = -3768.390169 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.74413 -40.16005 -39.95816 -38.67574 -37.39367 -35.55435 -33.03785 -32.53540 -30.60689 -30.44612 -28.72442 -28.09582 -27.97826 -26.41743 -24.14414 -23.98279 -22.35690 -22.13703 -19.64320 -19.48052 -18.33967 -18.04791 -17.61290 -17.25328 -17.16350 -16.43016 -16.38462 -16.09817 -15.89531 -15.85961 -15.44888 -15.35913 -14.68286 -14.37229 -14.07808 -14.00078 -13.82314 -13.42127 -13.12949 -12.94046 -12.78642 -12.73808 -12.68504 -12.45541 -12.40420 -12.27337 -11.89875 -11.86395 -11.76247 -11.17871 -10.89446 -10.29803 -9.87446 -9.58634 -9.17973 -8.80729 -8.43022 -6.56206 -0.15449 0.41913 0.97987 1.20017 1.40253 1.53400 1.55138 1.90540 2.17565 2.49691 2.71957 2.83307 3.04163 3.82589 3.88566 3.96945 4.04319 4.06333 4.26401 4.37793 4.38193 4.39062 4.39851 4.45690 4.49002 4.53062 4.55470 4.71990 4.72862 4.79182 4.81024 4.84439 5.02978 5.10855 5.20672 5.33081 5.40324 5.44815 5.71219 5.91567 6.02916 6.09186 6.17665 6.30551 6.58913 6.76049 6.83624 8.06456 8.30079 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.019713 B = 0.003298 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.023008 B = 8489.163481 C = 9797.523270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.319 6.319 3 C 0.155 3.845 4 C -0.258 4.258 5 C 0.084 3.916 6 C -0.277 4.277 7 C -0.031 4.031 8 C -0.284 4.284 9 C 0.219 3.781 10 C -0.438 4.438 11 H 0.098 0.902 12 C 0.020 3.980 13 N -0.739 5.739 14 Si 0.992 3.008 15 H -0.263 1.263 16 H -0.267 1.267 17 H -0.251 1.251 18 N -0.522 5.522 19 C 0.144 3.856 20 C -0.255 4.255 21 C 0.156 3.844 22 O -0.319 6.319 23 C 0.016 3.984 24 C -0.025 4.025 25 O -0.330 6.330 26 C 0.032 3.968 27 H 0.128 0.872 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.285 0.715 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.127 0.873 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.041 -7.475 -1.914 11.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.232 6.232 3 C 0.108 3.892 4 C -0.277 4.277 5 C 0.083 3.917 6 C -0.282 4.282 7 C -0.054 4.054 8 C -0.307 4.307 9 C 0.097 3.903 10 C -0.468 4.468 11 H 0.116 0.884 12 C -0.204 4.204 13 N -0.359 5.359 14 Si 0.811 3.189 15 H -0.188 1.188 16 H -0.191 1.191 17 H -0.175 1.175 18 N -0.235 5.235 19 C -0.024 4.024 20 C -0.274 4.274 21 C 0.109 3.891 22 O -0.232 6.232 23 C -0.078 4.078 24 C -0.070 4.070 25 O -0.247 6.247 26 C -0.063 4.063 27 H 0.146 0.854 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.136 0.864 33 H 0.096 0.904 34 H 0.153 0.847 35 H 0.163 0.837 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.201 -8.010 -1.769 11.599 hybrid contribution -0.007 1.026 -0.293 1.067 sum 8.194 -6.984 -2.061 10.962 Atomic orbital electron populations 1.23380 0.76464 1.05712 1.02135 1.86071 1.23209 1.25675 1.88216 1.18853 0.90548 0.85002 0.94757 1.21148 1.00520 0.90732 1.15272 1.18400 0.91978 0.91648 0.89714 1.19208 0.93953 0.92307 1.22758 1.20984 0.99122 0.91467 0.93855 1.21633 0.94584 0.98630 1.15807 1.19147 0.90552 0.91900 0.88744 1.20188 0.92464 0.93878 1.40249 0.88380 1.27139 0.99820 1.00727 0.92732 1.70209 1.12663 1.26239 1.26772 0.85043 0.77190 0.77204 0.79456 1.18763 1.19140 1.17465 1.68762 1.37899 0.97632 1.19202 1.23087 0.90228 0.97309 0.91814 1.21146 0.93497 0.97541 1.15177 1.18829 0.83233 0.92291 0.94733 1.86080 1.15964 1.32970 1.88213 1.23400 1.00132 0.82006 1.02236 1.17105 0.86602 0.84878 1.18426 1.86073 1.70479 1.37940 1.30204 1.23112 0.99629 0.99003 0.84526 0.85381 0.92248 0.92098 0.84294 0.85101 0.86445 0.90449 0.84683 0.83691 0.91894 0.92058 0.85475 0.94072 0.93930 0.87013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.32 -9.81 10.27 -79.39 -0.82 -10.62 16 3 C 0.15 5.34 6.69 22.52 0.15 5.49 16 4 C -0.26 -9.14 8.42 22.63 0.19 -8.95 16 5 C 0.08 3.19 5.88 -20.02 -0.12 3.07 16 6 C -0.28 -11.95 5.92 -19.76 -0.12 -12.07 16 7 C -0.03 -1.32 9.46 22.40 0.21 -1.10 16 8 C -0.28 -13.17 9.76 22.55 0.22 -12.95 16 9 C 0.22 11.60 6.54 40.15 0.26 11.86 16 10 C -0.44 -22.35 9.11 23.37 0.21 -22.13 16 11 H 0.10 4.58 7.86 -2.91 -0.02 4.56 16 12 C 0.02 0.95 5.49 85.30 0.47 1.41 16 13 N -0.74 -37.73 11.47 21.84 0.25 -37.47 16 14 Si 0.99 35.37 29.56 68.60 2.03 37.40 16 15 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 16 H -0.27 -9.13 7.11 99.48 0.71 -8.43 16 17 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 18 N -0.52 -28.17 7.86 -188.19 -1.48 -29.65 16 19 C 0.14 6.80 10.60 85.26 0.90 7.70 16 20 C -0.25 -8.62 8.42 22.63 0.19 -8.43 16 21 C 0.16 5.21 6.69 22.52 0.15 5.36 16 22 O -0.32 -9.34 10.27 -79.38 -0.82 -10.16 16 23 C 0.02 0.33 9.81 113.37 1.11 1.44 16 24 C -0.02 -0.88 5.76 22.76 0.13 -0.75 16 25 O -0.33 -11.08 9.96 -68.92 -0.69 -11.77 16 26 C 0.03 0.79 11.13 113.37 1.26 2.05 16 27 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.06 1.32 7.66 -2.39 -0.02 1.30 16 29 H 0.06 1.32 7.66 -2.39 -0.02 1.30 16 30 H 0.14 4.62 4.43 -2.91 -0.01 4.61 16 31 H 0.13 4.49 6.29 -2.91 -0.02 4.47 16 32 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 33 H 0.28 13.00 8.29 -92.70 -0.77 12.23 16 34 H 0.14 5.74 6.20 -2.91 -0.02 5.73 16 35 H 0.15 4.32 4.46 -2.91 -0.01 4.31 16 36 H 0.06 1.17 7.66 -2.39 -0.02 1.15 16 37 H 0.06 1.18 7.66 -2.39 -0.02 1.16 16 38 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -65.81 347.14 5.90 -59.91 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 1.07 Total: 28.85 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 6.35 Total: -26.49 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: -1.23 Total: -67.12 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -2.32 Total: -32.55 kcal Atomic # 14 Polarization: 35.37 SS G_CDS: 2.03 Total: 37.40 kcal Total: -65.81 5.90 -59.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239641988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.091 kcal (2) G-P(sol) polarization free energy of solvation -65.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds