Wall clock time and date at job start Tue Mar 31 2020 10:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35539 * 117.00310 * 2 1 4 4 C 1.39126 * 120.47607 * 359.97438 * 3 2 1 5 5 C 1.38303 * 118.64503 * 180.02562 * 4 3 2 6 6 C 1.40147 * 119.56570 * 359.97438 * 5 4 3 7 7 C 1.48145 * 119.51860 * 180.02562 * 6 5 4 8 8 C 1.39531 * 120.13521 * 47.24722 * 7 6 5 9 9 C 1.37912 * 120.01611 * 179.97438 * 8 7 6 10 10 C 1.38438 * 120.29073 * 359.97438 * 9 8 7 11 11 C 1.38546 * 120.27962 * 0.04730 * 10 9 8 12 12 O 1.36002 * 120.01467 * 179.97438 * 11 10 9 13 13 C 1.42903 * 116.99679 * 359.97438 * 12 11 10 14 14 C 1.39059 * 119.97424 * 359.67397 * 11 10 9 15 15 O 1.35898 * 120.14484 * 180.29926 * 14 11 10 16 16 C 1.42903 * 117.00100 * 274.89969 * 15 14 11 17 17 N 1.32211 * 120.95578 * 359.74146 * 6 5 4 18 18 C 1.33600 * 121.44981 * 0.52489 * 17 6 5 19 19 C 1.40976 * 119.82976 * 179.75141 * 18 17 6 20 20 H 1.07996 * 120.00502 * 173.78264 * 19 18 17 21 21 C 1.40025 * 120.00206 * 353.78946 * 19 18 17 22 22 N 1.30781 * 119.99538 * 6.60314 * 21 19 18 23 23 Si 1.86800 * 120.00092 * 186.60607 * 21 19 18 24 24 H 1.48496 * 109.47354 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46959 * 119.99809 * 23 21 19 26 26 H 1.48496 * 109.46858 * 239.99866 * 23 21 19 27 27 H 1.09000 * 109.47430 * 299.99997 * 1 2 3 28 28 H 1.09000 * 109.47189 * 60.00108 * 1 2 3 29 29 H 1.08998 * 109.47424 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.67915 * 0.02562 * 4 3 2 31 31 H 1.07993 * 120.21821 * 180.02562 * 5 4 3 32 32 H 1.07993 * 119.99465 * 359.97305 * 8 7 6 33 33 H 1.07987 * 119.85077 * 180.02562 * 9 8 7 34 34 H 1.08002 * 119.86270 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47342 * 59.99957 * 13 12 11 36 36 H 1.09004 * 109.47013 * 179.97438 * 13 12 11 37 37 H 1.09000 * 109.47116 * 299.99870 * 13 12 11 38 38 H 1.09006 * 109.46520 * 64.96972 * 16 15 14 39 39 H 1.08999 * 109.47324 * 184.96676 * 16 15 14 40 40 H 1.09001 * 109.47193 * 304.97364 * 16 15 14 41 41 H 0.96998 * 119.99762 * 184.99666 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.2964 2.3807 -0.0005 5 6 1.9634 3.5923 -0.0011 6 6 3.3647 3.6102 -0.0005 7 6 4.0781 4.9086 -0.0005 8 6 3.6972 5.9172 0.8852 9 6 4.3633 7.1247 0.8835 10 6 5.4115 7.3427 0.0058 11 6 5.7996 6.3498 -0.8791 12 8 6.8297 6.5700 -1.7394 13 6 7.4658 7.8480 -1.6762 14 6 5.1395 5.1259 -0.8831 15 8 5.5213 4.1474 -1.7455 16 6 4.9647 4.1886 -3.0610 17 7 4.0592 2.4852 0.0057 18 6 3.4556 1.2933 0.0011 19 6 4.2297 0.1152 0.0026 20 1 3.7489 -0.8469 0.1002 21 6 5.6223 0.1922 -0.1223 22 7 6.2163 1.3573 -0.1105 23 14 6.6314 -1.3690 -0.3060 24 1 5.7277 -2.5472 -0.2905 25 1 7.3723 -1.3310 -1.5924 26 1 7.5963 -1.4697 0.8182 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2170 2.3460 -0.0005 31 1 1.4080 4.5185 -0.0011 32 1 2.8805 5.7522 1.5723 33 1 4.0665 7.9033 1.5704 34 1 5.9286 8.2908 0.0107 35 1 7.8796 7.9991 -0.6791 36 1 8.2684 7.8912 -2.4125 37 1 6.7351 8.6285 -1.8884 38 1 5.3116 5.0854 -3.5743 39 1 5.2811 3.3062 -3.6172 40 1 3.8768 4.2056 -2.9948 41 1 7.1713 1.4163 -0.2694 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239814693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:17 Heat of formation + Delta-G solvation = -38.116639 kcal Electronic energy + Delta-G solvation = -26621.065209 eV Core-core repulsion = 22853.971011 eV Total energy + Delta-G solvation = -3767.094198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.02626 -38.83464 -37.65400 -36.61436 -36.10920 -33.59463 -31.03911 -30.35891 -29.60548 -28.55108 -27.13914 -26.54388 -26.11484 -25.25933 -22.46934 -21.92167 -21.13889 -20.14818 -17.90778 -17.22942 -16.75483 -16.58424 -16.13546 -15.64015 -15.51225 -14.72667 -14.68920 -14.59323 -14.43412 -14.14127 -14.04868 -13.18129 -12.92187 -12.88792 -12.48599 -12.37306 -12.09518 -11.97427 -11.60639 -11.39451 -11.25062 -11.13364 -11.10317 -10.84362 -10.64092 -10.55112 -10.38710 -10.26730 -9.78887 -9.27981 -9.13446 -8.34992 -8.06889 -7.69064 -7.61408 -6.97445 -6.29205 -4.30519 1.54854 1.79435 2.77150 2.97556 3.18684 3.21967 3.24665 3.52619 4.03154 4.06857 4.44845 4.56138 4.82776 5.05557 5.21359 5.22280 5.31534 5.49107 5.57648 5.70632 5.71164 5.73907 5.82230 5.90057 5.95241 5.98209 5.99761 6.09536 6.11989 6.27075 6.29497 6.54648 6.68431 6.77626 6.83825 7.02670 7.05810 7.27962 7.44915 7.54391 7.59758 7.90465 8.25481 8.37047 8.39154 8.78459 9.05968 10.08401 10.41076 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.005473 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.333412 B = 5114.717055 C = 6687.396071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.309 6.309 3 C -0.031 4.031 4 C -0.147 4.147 5 C -0.275 4.275 6 C 0.150 3.850 7 C 0.015 3.985 8 C -0.132 4.132 9 C -0.097 4.097 10 C -0.210 4.210 11 C 0.094 3.906 12 O -0.308 6.308 13 C 0.028 3.972 14 C 0.102 3.898 15 O -0.282 6.282 16 C 0.045 3.955 17 N -0.425 5.425 18 C 0.248 3.752 19 C -0.409 4.409 20 H 0.089 0.911 21 C 0.063 3.937 22 N -0.688 5.688 23 Si 0.902 3.098 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.275 1.275 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.033 0.967 39 H 0.085 0.915 40 H 0.036 0.964 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.626 9.680 -2.192 10.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.222 6.222 3 C -0.080 4.080 4 C -0.171 4.171 5 C -0.299 4.299 6 C 0.007 3.993 7 C 0.014 3.986 8 C -0.152 4.152 9 C -0.115 4.115 10 C -0.229 4.229 11 C 0.049 3.951 12 O -0.222 6.222 13 C -0.067 4.067 14 C 0.056 3.944 15 O -0.196 6.196 16 C -0.050 4.050 17 N -0.139 5.139 18 C 0.121 3.879 19 C -0.440 4.440 20 H 0.107 0.893 21 C -0.164 4.164 22 N -0.308 5.308 23 Si 0.726 3.274 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.200 1.200 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.202 9.285 -2.252 9.557 hybrid contribution -0.949 0.055 -0.095 0.955 sum -1.151 9.340 -2.347 9.699 Atomic orbital electron populations 1.22741 0.81845 1.01797 0.99868 1.85944 1.18196 1.27957 1.90093 1.20376 0.93724 0.83130 1.10743 1.20809 0.97603 0.92582 1.06139 1.20881 0.93724 0.96167 1.19113 1.19420 0.89138 0.91682 0.99079 1.18925 0.92097 0.93103 0.94507 1.21038 1.01473 0.92791 0.99850 1.20713 0.95484 0.97044 0.98263 1.20997 1.02275 0.99167 1.00440 1.19449 0.89918 0.93815 0.91937 1.86172 1.44946 1.34858 1.56200 1.22983 0.97122 0.84216 1.02391 1.18040 0.94580 0.86047 0.95693 1.86333 1.66553 1.46028 1.20736 1.22791 0.97549 1.01012 0.83688 1.69140 1.34052 0.94858 1.15856 1.18192 0.84896 0.92196 0.92652 1.19532 0.90856 0.93021 1.40628 0.89251 1.26062 0.98491 0.97065 0.94753 1.70173 1.10698 1.23982 1.25965 0.86352 0.79948 0.82605 0.78470 1.18456 1.19915 1.20043 0.94249 0.94255 0.89947 0.87952 0.88610 0.85623 0.86053 0.85874 0.92942 0.88721 0.93159 0.94883 0.89682 0.94486 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.83 101.05 0.99 1.56 16 2 O -0.31 -7.10 9.62 -18.31 -0.18 -7.28 16 3 C -0.03 -0.78 6.74 -38.06 -0.26 -1.03 16 4 C -0.15 -3.33 9.11 -39.23 -0.36 -3.69 16 5 C -0.27 -6.24 9.46 -38.84 -0.37 -6.61 16 6 C 0.15 3.69 6.09 -82.92 -0.50 3.19 16 7 C 0.02 0.33 5.62 -104.78 -0.59 -0.26 16 8 C -0.13 -2.39 9.42 -39.22 -0.37 -2.76 16 9 C -0.10 -1.47 10.02 -39.63 -0.40 -1.87 16 10 C -0.21 -3.22 9.03 -39.39 -0.36 -3.57 16 11 C 0.09 1.73 6.69 -39.16 -0.26 1.47 16 12 O -0.31 -5.23 10.28 -34.31 -0.35 -5.58 16 13 C 0.03 0.32 9.81 101.05 0.99 1.31 16 14 C 0.10 2.22 5.71 -38.71 -0.22 2.00 16 15 O -0.28 -6.54 9.08 -33.99 -0.31 -6.85 16 16 C 0.04 0.86 11.13 101.05 1.12 1.99 16 17 N -0.43 -11.71 7.05 -7.58 -0.05 -11.77 16 18 C 0.25 6.88 6.56 -84.86 -0.56 6.32 16 19 C -0.41 -11.23 8.93 -37.88 -0.34 -11.56 16 20 H 0.09 2.39 7.33 -52.49 -0.38 2.01 16 21 C 0.06 1.64 5.49 -17.33 -0.10 1.55 16 22 N -0.69 -18.63 11.48 55.55 0.64 -17.99 16 23 Si 0.90 19.24 29.57 -169.99 -5.03 14.22 16 24 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 28 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.10 1.99 6.43 -52.49 -0.34 1.65 16 31 H 0.10 1.92 7.97 -52.49 -0.42 1.50 16 32 H 0.13 2.09 7.97 -52.49 -0.42 1.67 16 33 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.12 1.48 6.28 -52.49 -0.33 1.15 16 35 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.27 6.89 8.30 -40.82 -0.34 6.56 16 LS Contribution 351.77 15.07 5.30 5.30 Total: -1.00 -32.19 351.77 -6.69 -38.88 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.15 Total: 3.04 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -1.56 Total: -11.98 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 0.58 Total: -29.76 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.84 Total: -19.71 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.19 -6.69 -38.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239814693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.766 kcal (2) G-P(sol) polarization free energy of solvation -32.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds