Wall clock time and date at job start Tue Mar 31 2020 10:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35539 * 117.00310 * 2 1 4 4 C 1.39126 * 120.47607 * 359.97438 * 3 2 1 5 5 C 1.38303 * 118.64503 * 180.02562 * 4 3 2 6 6 C 1.40147 * 119.56570 * 359.97438 * 5 4 3 7 7 C 1.48145 * 119.51860 * 180.02562 * 6 5 4 8 8 C 1.39531 * 120.13521 * 47.24722 * 7 6 5 9 9 C 1.37912 * 120.01611 * 179.97438 * 8 7 6 10 10 C 1.38438 * 120.29073 * 359.97438 * 9 8 7 11 11 C 1.38546 * 120.27962 * 0.04730 * 10 9 8 12 12 O 1.36002 * 120.01467 * 179.97438 * 11 10 9 13 13 C 1.42903 * 116.99679 * 359.97438 * 12 11 10 14 14 C 1.39059 * 119.97424 * 359.67397 * 11 10 9 15 15 O 1.35898 * 120.14484 * 180.29926 * 14 11 10 16 16 C 1.42903 * 117.00100 * 274.89969 * 15 14 11 17 17 N 1.32211 * 120.95578 * 359.74146 * 6 5 4 18 18 C 1.33600 * 121.44981 * 0.52489 * 17 6 5 19 19 C 1.40976 * 119.82976 * 179.75141 * 18 17 6 20 20 H 1.07996 * 120.00502 * 173.78264 * 19 18 17 21 21 C 1.40025 * 120.00206 * 353.78946 * 19 18 17 22 22 N 1.30781 * 119.99538 * 6.60314 * 21 19 18 23 23 Si 1.86800 * 120.00092 * 186.60607 * 21 19 18 24 24 H 1.48496 * 109.47354 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46959 * 119.99809 * 23 21 19 26 26 H 1.48496 * 109.46858 * 239.99866 * 23 21 19 27 27 H 1.09000 * 109.47430 * 299.99997 * 1 2 3 28 28 H 1.09000 * 109.47189 * 60.00108 * 1 2 3 29 29 H 1.08998 * 109.47424 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.67915 * 0.02562 * 4 3 2 31 31 H 1.07993 * 120.21821 * 180.02562 * 5 4 3 32 32 H 1.07993 * 119.99465 * 359.97305 * 8 7 6 33 33 H 1.07987 * 119.85077 * 180.02562 * 9 8 7 34 34 H 1.08002 * 119.86270 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47342 * 59.99957 * 13 12 11 36 36 H 1.09004 * 109.47013 * 179.97438 * 13 12 11 37 37 H 1.09000 * 109.47116 * 299.99870 * 13 12 11 38 38 H 1.09006 * 109.46520 * 64.96972 * 16 15 14 39 39 H 1.08999 * 109.47324 * 184.96676 * 16 15 14 40 40 H 1.09001 * 109.47193 * 304.97364 * 16 15 14 41 41 H 0.96998 * 119.99762 * 184.99666 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.2964 2.3807 -0.0005 5 6 1.9634 3.5923 -0.0011 6 6 3.3647 3.6102 -0.0005 7 6 4.0781 4.9086 -0.0005 8 6 3.6972 5.9172 0.8852 9 6 4.3633 7.1247 0.8835 10 6 5.4115 7.3427 0.0058 11 6 5.7996 6.3498 -0.8791 12 8 6.8297 6.5700 -1.7394 13 6 7.4658 7.8480 -1.6762 14 6 5.1395 5.1259 -0.8831 15 8 5.5213 4.1474 -1.7455 16 6 4.9647 4.1886 -3.0610 17 7 4.0592 2.4852 0.0057 18 6 3.4556 1.2933 0.0011 19 6 4.2297 0.1152 0.0026 20 1 3.7489 -0.8469 0.1002 21 6 5.6223 0.1922 -0.1223 22 7 6.2163 1.3573 -0.1105 23 14 6.6314 -1.3690 -0.3060 24 1 5.7277 -2.5472 -0.2905 25 1 7.3723 -1.3310 -1.5924 26 1 7.5963 -1.4697 0.8182 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2170 2.3460 -0.0005 31 1 1.4080 4.5185 -0.0011 32 1 2.8805 5.7522 1.5723 33 1 4.0665 7.9033 1.5704 34 1 5.9286 8.2908 0.0107 35 1 7.8796 7.9991 -0.6791 36 1 8.2684 7.8912 -2.4125 37 1 6.7351 8.6285 -1.8884 38 1 5.3116 5.0854 -3.5743 39 1 5.2811 3.3062 -3.6172 40 1 3.8768 4.2056 -2.9948 41 1 7.1713 1.4163 -0.2694 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239814693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:16 Heat of formation + Delta-G solvation = -58.275599 kcal Electronic energy + Delta-G solvation = -26621.939367 eV Core-core repulsion = 22853.971011 eV Total energy + Delta-G solvation = -3767.968356 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.40728 -40.55184 -39.06633 -38.28068 -37.57598 -35.47362 -32.64330 -32.19913 -30.91820 -30.17330 -28.21285 -28.05404 -27.68945 -26.98015 -23.99816 -23.52752 -22.76148 -21.71372 -19.47738 -18.92540 -18.40591 -18.06281 -17.62202 -17.14810 -16.80473 -16.47516 -16.29753 -16.04719 -15.91394 -15.50424 -15.37023 -14.80099 -14.63700 -14.32874 -14.14616 -13.86125 -13.58821 -13.27802 -13.05726 -12.91946 -12.83530 -12.68547 -12.56272 -12.36817 -12.10028 -12.06649 -11.91759 -11.76110 -11.56400 -11.14508 -10.68427 -9.98873 -9.80035 -9.47637 -9.01730 -8.76781 -8.18208 -6.29006 0.10038 0.44798 0.97162 1.17807 1.41374 1.51638 1.56707 2.28028 2.37955 2.65568 2.86358 2.92285 3.14062 3.77774 3.89368 4.05546 4.19487 4.25833 4.35554 4.37933 4.39260 4.43858 4.45835 4.48144 4.50199 4.56071 4.60228 4.71483 4.73554 4.74452 4.78859 4.96592 5.01578 5.29767 5.34048 5.44495 5.48321 5.65273 5.72881 5.80838 6.11237 6.34746 6.37515 6.45871 6.87104 6.91663 7.19229 8.20517 8.52571 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.005473 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.333412 B = 5114.717055 C = 6687.396071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.334 6.334 3 C -0.047 4.047 4 C -0.146 4.146 5 C -0.267 4.267 6 C 0.131 3.869 7 C -0.023 4.023 8 C -0.139 4.139 9 C -0.080 4.080 10 C -0.195 4.195 11 C 0.088 3.912 12 O -0.334 6.334 13 C 0.017 3.983 14 C 0.066 3.934 15 O -0.315 6.315 16 C 0.049 3.951 17 N -0.453 5.453 18 C 0.212 3.788 19 C -0.449 4.449 20 H 0.081 0.919 21 C 0.023 3.977 22 N -0.725 5.725 23 Si 0.976 3.024 24 H -0.258 1.258 25 H -0.268 1.268 26 H -0.268 1.268 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.113 0.887 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.136 0.864 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.064 0.936 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.025 0.975 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 12.145 -1.739 12.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.248 6.248 3 C -0.096 4.096 4 C -0.170 4.170 5 C -0.291 4.291 6 C -0.011 4.011 7 C -0.024 4.024 8 C -0.158 4.158 9 C -0.098 4.098 10 C -0.214 4.214 11 C 0.043 3.957 12 O -0.249 6.249 13 C -0.077 4.077 14 C 0.021 3.979 15 O -0.231 6.231 16 C -0.046 4.046 17 N -0.167 5.167 18 C 0.084 3.916 19 C -0.481 4.481 20 H 0.100 0.900 21 C -0.200 4.200 22 N -0.347 5.347 23 Si 0.797 3.203 24 H -0.181 1.181 25 H -0.193 1.193 26 H -0.193 1.193 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.131 0.869 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.186 0.814 34 H 0.183 0.817 35 H 0.083 0.917 36 H 0.133 0.867 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.043 0.957 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.746 11.779 -1.798 11.939 hybrid contribution -0.924 -0.489 -0.235 1.072 sum -1.670 11.291 -2.033 11.593 Atomic orbital electron populations 1.23101 0.78641 1.04325 1.00917 1.85886 1.21520 1.27289 1.90113 1.20419 0.93437 0.84663 1.11050 1.21193 0.99329 0.91683 1.04786 1.21301 0.93517 0.97449 1.16796 1.20018 0.90351 0.92281 0.98465 1.19065 0.93552 0.92952 0.96837 1.21240 1.02185 0.93099 0.99304 1.21205 0.94025 0.96645 0.97931 1.21482 1.01661 0.99746 0.98484 1.19498 0.90094 0.93359 0.92767 1.86136 1.44676 1.37974 1.56064 1.23368 0.97961 0.82397 1.03954 1.18380 0.95970 0.87300 0.96264 1.86264 1.67195 1.47719 1.21918 1.22788 0.96714 1.01918 0.83179 1.69092 1.35493 0.95583 1.16524 1.18633 0.86729 0.92744 0.93494 1.19671 0.92051 0.92871 1.43514 0.90048 1.26852 0.98976 1.00313 0.93863 1.70306 1.10748 1.26069 1.27554 0.85249 0.78081 0.78316 0.78626 1.18146 1.19265 1.19262 0.93008 0.93100 0.86886 0.84413 0.85694 0.84645 0.81402 0.81709 0.91700 0.86737 0.90998 0.92710 0.89907 0.95667 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.83 113.37 1.11 1.93 16 2 O -0.33 -15.63 9.62 -88.43 -0.85 -16.49 16 3 C -0.05 -2.43 6.74 23.26 0.16 -2.27 16 4 C -0.15 -6.55 9.11 22.50 0.21 -6.34 16 5 C -0.27 -12.10 9.46 22.75 0.22 -11.89 16 6 C 0.13 6.65 6.09 42.18 0.26 6.91 16 7 C -0.02 -1.00 5.62 -19.97 -0.11 -1.12 16 8 C -0.14 -4.80 9.42 22.50 0.21 -4.59 16 9 C -0.08 -2.12 10.02 22.24 0.22 -1.90 16 10 C -0.20 -5.27 9.03 22.39 0.20 -5.06 16 11 C 0.09 3.15 6.69 22.54 0.15 3.30 16 12 O -0.33 -10.93 10.28 -79.64 -0.82 -11.75 16 13 C 0.02 0.33 9.81 113.37 1.11 1.44 16 14 C 0.07 2.93 5.71 22.83 0.13 3.06 16 15 O -0.32 -15.39 9.08 -78.47 -0.71 -16.10 16 16 C 0.05 1.98 11.13 113.37 1.26 3.24 16 17 N -0.45 -26.27 7.05 -177.88 -1.25 -27.52 16 18 C 0.21 12.41 6.56 40.32 0.26 12.67 16 19 C -0.45 -26.16 8.93 23.37 0.21 -25.95 16 20 H 0.08 4.64 7.33 -2.91 -0.02 4.62 16 21 C 0.02 1.26 5.49 85.28 0.47 1.72 16 22 N -0.73 -41.60 11.48 21.84 0.25 -41.35 16 23 Si 0.98 41.39 29.57 68.60 2.03 43.42 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 27 H 0.05 1.53 7.69 -2.39 -0.02 1.51 16 28 H 0.05 1.51 7.69 -2.39 -0.02 1.49 16 29 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.14 5.05 6.43 -2.91 -0.02 5.03 16 31 H 0.13 4.80 7.97 -2.91 -0.02 4.78 16 32 H 0.14 4.25 7.97 -2.91 -0.02 4.23 16 33 H 0.17 2.88 8.06 -2.92 -0.02 2.86 16 34 H 0.17 3.02 6.28 -2.91 -0.02 3.00 16 35 H 0.06 1.09 7.66 -2.39 -0.02 1.07 16 36 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 38 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.27 14.62 8.30 -92.71 -0.77 13.85 16 Total: -1.00 -76.57 351.77 5.76 -70.80 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 1.05 Total: 23.84 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 6.07 Total: -24.85 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.00 Total: -68.88 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -2.38 Total: -44.33 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -76.57 5.76 -70.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239814693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.525 kcal (2) G-P(sol) polarization free energy of solvation -76.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds