Wall clock time and date at job start Tue Mar 31 2020 10:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36094 * 116.99808 * 2 1 4 4 C 1.38591 * 119.94976 * 0.02562 * 3 2 1 5 5 C 1.38300 * 120.33834 * 179.97438 * 4 3 2 6 6 C 1.38489 * 120.22932 * 359.97438 * 5 4 3 7 7 O 1.35873 * 120.05200 * 180.02562 * 6 5 4 8 8 C 1.42891 * 117.00319 * 359.97355 * 7 6 5 9 9 C 1.39914 * 119.89659 * 359.97438 * 6 5 4 10 10 C 1.48059 * 120.16734 * 179.97438 * 9 6 5 11 11 C 1.40049 * 119.61682 * 48.14083 * 10 9 6 12 12 C 1.38627 * 119.45606 * 179.97438 * 11 10 9 13 13 C 1.38342 * 118.70841 * 359.71829 * 12 11 10 14 14 C 1.40668 * 119.20510 * 0.56222 * 13 12 11 15 15 C 1.41345 * 119.76430 * 179.70102 * 14 13 12 16 16 H 1.07998 * 119.99558 * 11.17185 * 15 14 13 17 17 C 1.40012 * 120.00409 * 191.17166 * 15 14 13 18 18 N 1.30751 * 119.99875 * 192.22040 * 17 15 14 19 19 Si 1.86798 * 119.99744 * 12.49126 * 17 15 14 20 20 H 1.48500 * 109.47151 * 274.73423 * 19 17 15 21 21 H 1.48497 * 109.47222 * 34.73317 * 19 17 15 22 22 H 1.48499 * 109.47101 * 154.72818 * 19 17 15 23 23 N 1.32295 * 119.62215 * 228.15515 * 10 9 6 24 24 C 1.38935 * 119.94611 * 180.25491 * 3 2 1 25 25 O 1.35895 * 120.11842 * 0.02562 * 24 3 2 26 26 C 1.42904 * 116.99894 * 274.59328 * 25 24 3 27 27 H 1.09005 * 109.47131 * 299.99733 * 1 2 3 28 28 H 1.08993 * 109.47231 * 59.99563 * 1 2 3 29 29 H 1.09001 * 109.47078 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.83225 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.88422 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.47000 * 59.99880 * 8 7 6 33 33 H 1.09003 * 109.47376 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.47488 * 300.00463 * 8 7 6 35 35 H 1.07996 * 120.27115 * 0.02562 * 11 10 9 36 36 H 1.08006 * 120.64461 * 180.02562 * 12 11 10 37 37 H 1.07992 * 120.39927 * 180.28615 * 13 12 11 38 38 H 0.97001 * 119.99399 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.47132 * 64.93696 * 26 25 24 40 40 H 1.08992 * 109.46494 * 184.94078 * 26 25 24 41 41 H 1.09002 * 109.46694 * 304.94261 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 1.2909 2.3743 0.0005 5 6 1.9104 3.6108 0.0011 6 6 3.2925 3.6982 0.0016 7 8 3.8973 4.9149 0.0027 8 6 3.0461 6.0626 0.0026 9 6 4.0651 2.5317 0.0022 10 6 5.5431 2.6182 0.0022 11 6 6.1866 3.4701 0.9086 12 6 7.5706 3.5481 0.9061 13 6 8.2783 2.7719 0.0057 14 6 7.5752 1.9398 -0.8842 15 6 8.2861 1.1466 -1.8133 16 1 9.3571 1.0394 -1.7238 17 6 7.6021 0.4998 -2.8497 18 7 8.2067 -0.4161 -3.5604 19 14 5.8280 0.9508 -3.2218 20 1 4.9235 0.1722 -2.3381 21 1 5.6254 2.4022 -2.9821 22 1 5.5246 0.6365 -4.6411 23 7 6.2408 1.8901 -0.8542 24 6 3.4343 1.2841 -0.0054 25 8 4.1757 0.1452 -0.0111 26 6 4.4493 -0.4572 1.2555 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.2126 2.3136 0.0005 31 1 1.3142 4.5113 0.0011 32 1 2.4162 6.0478 0.8921 33 1 3.6550 6.9667 0.0030 34 1 2.4175 6.0487 -0.8878 35 1 5.6093 4.0608 1.6044 36 1 8.0866 4.1984 1.5970 37 1 9.3574 2.8079 -0.0168 38 1 7.7326 -0.8644 -4.2781 39 1 3.5168 -0.8005 1.7035 40 1 5.1199 -1.3052 1.1171 41 1 4.9198 0.2749 1.9119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239874515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:14 Heat of formation + Delta-G solvation = -50.992385 kcal Electronic energy + Delta-G solvation = -27140.699683 eV Core-core repulsion = 23373.047151 eV Total energy + Delta-G solvation = -3767.652532 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.55508 -38.94889 -38.38599 -37.55312 -35.59688 -33.60248 -31.84652 -31.00415 -29.58509 -28.97559 -27.40159 -26.81540 -26.32503 -25.52707 -23.15022 -21.81415 -21.20280 -20.49422 -18.28834 -17.65428 -17.38439 -16.88153 -16.07932 -15.84684 -15.55298 -15.40771 -14.81653 -14.68734 -14.58508 -14.41760 -14.30522 -13.92338 -13.02935 -12.84593 -12.73613 -12.54564 -12.34942 -12.26479 -12.08037 -11.67513 -11.55729 -11.39413 -11.30038 -10.93672 -10.64569 -10.53801 -10.26633 -10.18241 -9.94627 -9.48853 -9.16935 -8.74612 -8.36429 -7.70093 -7.60540 -7.37040 -6.78478 -4.56114 1.17199 1.54256 2.61132 2.77801 3.29418 3.43926 3.61514 3.69836 3.81005 3.83261 4.31894 4.62089 4.65893 4.74858 4.95205 5.04402 5.10731 5.11834 5.19596 5.26087 5.40766 5.41813 5.51415 5.65147 5.72063 5.76902 5.78841 5.91337 6.04382 6.16550 6.24108 6.25566 6.41846 6.54880 6.64961 6.74052 6.97972 7.23099 7.32889 7.43338 7.58193 7.62292 7.92737 8.04219 8.23050 8.64178 8.72788 9.64917 10.13952 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.011714 B = 0.006834 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.780178 B = 4096.336012 C = 5269.060953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.307 6.307 3 C 0.064 3.936 4 C -0.162 4.162 5 C -0.184 4.184 6 C 0.122 3.878 7 O -0.296 6.296 8 C 0.026 3.974 9 C -0.038 4.038 10 C 0.208 3.792 11 C -0.276 4.276 12 C -0.052 4.052 13 C -0.256 4.256 14 C 0.245 3.755 15 C -0.413 4.413 16 H 0.094 0.906 17 C 0.090 3.910 18 N -0.803 5.803 19 Si 0.977 3.023 20 H -0.243 1.243 21 H -0.271 1.271 22 H -0.337 1.337 23 N -0.532 5.532 24 C 0.133 3.867 25 O -0.294 6.294 26 C 0.041 3.959 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.287 0.713 39 H 0.040 0.960 40 H 0.091 0.909 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.625 5.822 8.272 18.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.018 3.982 4 C -0.181 4.181 5 C -0.203 4.203 6 C 0.076 3.924 7 O -0.209 6.209 8 C -0.069 4.069 9 C -0.040 4.040 10 C 0.067 3.933 11 C -0.299 4.299 12 C -0.076 4.076 13 C -0.278 4.278 14 C 0.122 3.878 15 C -0.444 4.444 16 H 0.112 0.888 17 C -0.133 4.133 18 N -0.426 5.426 19 Si 0.811 3.189 20 H -0.168 1.168 21 H -0.197 1.197 22 H -0.271 1.271 23 N -0.250 5.250 24 C 0.087 3.913 25 O -0.209 6.209 26 C -0.053 4.053 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.110 0.890 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.502 4.819 7.373 17.829 hybrid contribution -0.788 1.050 0.515 1.410 sum -16.290 5.869 7.888 19.027 Atomic orbital electron populations 1.23009 0.79286 1.03604 1.00889 1.86190 1.20456 1.26027 1.89378 1.19225 0.91395 0.84883 1.02652 1.20807 0.99572 0.91216 1.06532 1.20839 0.92785 0.98234 1.08479 1.18643 0.90192 0.85046 0.98539 1.86262 1.34512 1.11587 1.88512 1.23034 0.95695 0.87384 1.00789 1.18239 0.92940 0.89171 1.03628 1.18790 0.89433 0.92676 0.92441 1.20979 0.94351 1.07984 1.06599 1.20843 0.93692 0.96625 0.96461 1.21655 0.99090 1.04226 1.02865 1.18531 0.87066 0.90288 0.91962 1.19454 0.96398 1.21543 1.06987 0.88808 1.26331 1.02622 0.90961 0.93359 1.69645 1.40102 1.17059 1.15828 0.84881 0.80245 0.81418 0.72313 1.16778 1.19704 1.27107 1.66868 1.07977 1.25538 1.24568 1.17693 0.85780 0.86389 1.01448 1.86306 1.70396 1.36008 1.28205 1.22899 0.99677 0.97772 0.84963 0.93077 0.92918 0.88494 0.85031 0.84990 0.92993 0.88394 0.93011 0.87943 0.87960 0.87610 0.90306 0.94161 0.89035 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.87 10.28 -34.75 -0.36 -5.23 16 3 C 0.06 1.10 6.69 -39.19 -0.26 0.84 16 4 C -0.16 -2.29 9.03 -39.43 -0.36 -2.64 16 5 C -0.18 -2.64 9.03 -39.47 -0.36 -3.00 16 6 C 0.12 2.20 6.57 -38.86 -0.26 1.95 16 7 O -0.30 -5.05 8.65 -19.34 -0.17 -5.22 16 8 C 0.03 0.29 9.81 101.05 0.99 1.28 16 9 C -0.04 -0.81 5.63 -104.66 -0.59 -1.40 16 10 C 0.21 5.02 5.89 -82.96 -0.49 4.53 16 11 C -0.28 -6.09 8.79 -38.76 -0.34 -6.43 16 12 C -0.05 -1.13 10.14 -39.40 -0.40 -1.53 16 13 C -0.26 -6.16 9.83 -38.63 -0.38 -6.54 16 14 C 0.25 6.65 6.25 -85.01 -0.53 6.12 16 15 C -0.41 -11.77 9.67 -37.74 -0.37 -12.13 16 16 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 17 C 0.09 2.56 5.52 -17.35 -0.10 2.46 16 18 N -0.80 -22.64 13.92 55.55 0.77 -21.87 16 19 Si 0.98 26.20 25.41 -169.99 -4.32 21.88 16 20 H -0.24 -6.64 5.93 56.52 0.34 -6.31 16 21 H -0.27 -7.63 6.67 56.52 0.38 -7.25 16 22 H -0.34 -8.84 7.11 56.52 0.40 -8.44 16 23 N -0.53 -14.26 4.26 -7.70 -0.03 -14.29 16 24 C 0.13 2.77 5.71 -38.74 -0.22 2.55 16 25 O -0.29 -6.56 7.96 -34.12 -0.27 -6.83 16 26 C 0.04 0.74 11.13 101.05 1.12 1.87 16 27 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 28 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.13 1.37 6.27 -52.49 -0.33 1.04 16 31 H 0.13 1.41 6.28 -52.49 -0.33 1.08 16 32 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 35 H 0.10 2.05 7.51 -52.49 -0.39 1.66 16 36 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 37 H 0.11 2.37 8.06 -52.49 -0.42 1.94 16 38 H 0.29 7.46 8.29 -40.82 -0.34 7.12 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -33.92 343.55 -5.98 -39.91 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -5.25 Total: -2.69 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -1.53 Total: -10.83 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.74 Total: -36.16 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.80 Total: -17.28 kcal Atomic # 14 Polarization: 26.20 SS G_CDS: -4.32 Total: 21.88 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.92 -5.98 -39.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239874515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.086 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds