Wall clock time and date at job start Tue Mar 31 2020 10:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.36075 * 117.00033 * 2 1 4 4 C 1.38594 * 119.95483 * 359.97438 * 3 2 1 5 5 C 1.38296 * 120.32133 * 179.97438 * 4 3 2 6 6 C 1.38499 * 120.22223 * 0.02562 * 5 4 3 7 7 O 1.35891 * 120.04657 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00396 * 0.02562 * 7 6 5 9 9 C 1.39824 * 119.89883 * 0.25400 * 6 5 4 10 10 C 1.48212 * 120.15331 * 179.70201 * 9 6 5 11 11 C 1.40109 * 120.82457 * 114.99932 * 10 9 6 12 12 C 1.38446 * 119.41615 * 179.97438 * 11 10 9 13 13 N 1.31512 * 121.15483 * 0.02562 * 12 11 10 14 14 C 1.33678 * 121.80828 * 359.97438 * 13 12 11 15 15 C 1.41435 * 119.77423 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00160 * 180.02562 * 15 14 13 17 17 C 1.40035 * 119.99802 * 0.02562 * 15 14 13 18 18 N 1.30738 * 120.00097 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99614 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47245 * 60.00252 * 19 17 15 21 21 H 1.48499 * 109.47076 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47344 * 299.99999 * 19 17 15 23 23 C 1.39409 * 120.82526 * 294.72459 * 10 9 6 24 24 C 1.38938 * 119.95572 * 179.97438 * 3 2 1 25 25 O 1.35911 * 120.10847 * 0.02562 * 24 3 2 26 26 C 1.42900 * 116.99986 * 90.00084 * 25 24 3 27 27 H 1.09002 * 109.46870 * 60.00608 * 1 2 3 28 28 H 1.09007 * 109.46705 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47224 * 300.00368 * 1 2 3 30 30 H 1.08006 * 119.83926 * 359.95527 * 4 3 2 31 31 H 1.08005 * 119.88717 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47382 * 179.97438 * 8 7 6 33 33 H 1.09001 * 109.46938 * 59.99709 * 8 7 6 34 34 H 1.09004 * 109.46926 * 299.99830 * 8 7 6 35 35 H 1.08001 * 120.29636 * 0.02803 * 11 10 9 36 36 H 1.07993 * 119.42563 * 180.02562 * 12 11 10 37 37 H 0.97000 * 119.99478 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.59320 * 359.97438 * 23 10 9 39 39 H 1.09006 * 109.47215 * 179.97438 * 26 25 24 40 40 H 1.09000 * 109.47107 * 299.99648 * 26 25 24 41 41 H 1.09000 * 109.47412 * 60.00086 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0469 1.2124 0.0000 4 6 1.2911 2.3742 -0.0005 5 6 1.9111 3.6104 0.0000 6 6 3.2934 3.6971 0.0005 7 8 3.8988 4.9137 0.0005 8 6 3.0480 6.0618 0.0005 9 6 4.0648 2.5310 -0.0048 10 6 5.5444 2.6172 -0.0110 11 6 6.2953 2.1494 1.0755 12 6 7.6761 2.2438 1.0387 13 7 8.2950 2.7653 0.0022 14 6 7.6260 3.2261 -1.0595 15 6 8.3355 3.7781 -2.1514 16 1 7.7986 4.1518 -3.0107 17 6 9.7340 3.8401 -2.1182 18 7 10.3840 3.3873 -1.0781 19 14 10.6710 4.5699 -3.5601 20 1 10.2540 5.9813 -3.7581 21 1 12.1285 4.5185 -3.2803 22 1 10.3755 3.7894 -4.7885 23 6 6.2238 3.1606 -1.1003 24 6 3.4344 1.2841 0.0005 25 8 4.1759 0.1450 0.0005 26 6 4.5303 -0.3983 -1.2727 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2127 2.3138 -0.0017 31 1 1.3153 4.5113 0.0000 32 1 3.6574 6.9656 0.0010 33 1 2.4188 6.0478 0.8905 34 1 2.4189 6.0478 -0.8895 35 1 5.8015 1.7181 1.9337 36 1 8.2550 1.8829 1.8759 37 1 11.3528 3.4299 -1.0554 38 1 5.6813 3.5277 -1.9590 39 1 5.1202 -1.3038 -1.1299 40 1 3.6249 -0.6383 -1.8301 41 1 5.1166 0.3328 -1.8293 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239879402.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:39 Heat of formation + Delta-G solvation = -61.849361 kcal Electronic energy + Delta-G solvation = -26330.986090 eV Core-core repulsion = 22562.862765 eV Total energy + Delta-G solvation = -3768.123326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79234 -40.10910 -39.82955 -38.98749 -36.85147 -35.51319 -33.66562 -31.89003 -30.83999 -30.11366 -28.38166 -27.75872 -27.65993 -27.48203 -24.45954 -23.30282 -22.76494 -22.13582 -19.82553 -19.02461 -18.37812 -18.15640 -17.43199 -17.20709 -17.01693 -16.46168 -16.30366 -16.07591 -15.93852 -15.82454 -15.62842 -15.57112 -14.51945 -14.26913 -14.18051 -13.92427 -13.69321 -13.47268 -13.34353 -12.90003 -12.82984 -12.72282 -12.67185 -12.44836 -12.38791 -12.21059 -11.85848 -11.76331 -11.29952 -11.18534 -11.02426 -10.19832 -9.57488 -9.52773 -9.48864 -8.70425 -8.26755 -6.49731 -0.06070 0.32179 0.92997 1.11480 1.40249 1.53352 1.55508 2.22067 2.24390 2.33849 2.52956 2.86528 3.01544 3.63973 3.84989 3.95987 4.08530 4.14068 4.22478 4.36644 4.38725 4.39354 4.42753 4.43457 4.46072 4.51233 4.69748 4.71760 4.73047 4.77323 4.84025 4.86517 4.98349 5.10869 5.15923 5.22698 5.40036 5.49182 5.64324 5.88598 6.10802 6.21004 6.28317 6.48574 6.65796 6.75009 6.97719 8.19738 8.48522 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016751 B = 0.004087 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.154778 B = 6849.271874 C = 7595.840470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.069 3.931 4 C -0.147 4.147 5 C -0.165 4.165 6 C 0.105 3.895 7 O -0.335 6.335 8 C 0.017 3.983 9 C -0.079 4.079 10 C 0.030 3.970 11 C -0.284 4.284 12 C 0.106 3.894 13 N -0.517 5.517 14 C 0.229 3.771 15 C -0.472 4.472 16 H 0.085 0.915 17 C 0.025 3.975 18 N -0.758 5.758 19 Si 0.987 3.013 20 H -0.258 1.258 21 H -0.267 1.267 22 H -0.258 1.258 23 C -0.257 4.257 24 C 0.090 3.910 25 O -0.335 6.335 26 C 0.042 3.958 27 H 0.069 0.931 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.177 0.823 31 H 0.172 0.828 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.137 0.863 37 H 0.279 0.721 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.060 0.940 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.075 -0.427 -0.211 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.023 3.977 4 C -0.166 4.166 5 C -0.183 4.183 6 C 0.059 3.941 7 O -0.248 6.248 8 C -0.077 4.077 9 C -0.080 4.080 10 C 0.023 3.977 11 C -0.307 4.307 12 C -0.058 4.058 13 N -0.230 5.230 14 C 0.104 3.896 15 C -0.504 4.504 16 H 0.103 0.897 17 C -0.196 4.196 18 N -0.380 5.380 19 Si 0.807 3.193 20 H -0.182 1.182 21 H -0.191 1.191 22 H -0.183 1.183 23 C -0.279 4.279 24 C 0.046 3.954 25 O -0.252 6.252 26 C -0.052 4.052 27 H 0.088 0.912 28 H 0.135 0.865 29 H 0.087 0.913 30 H 0.194 0.806 31 H 0.189 0.811 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.155 0.845 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.078 0.922 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -18.606 -0.644 0.010 18.617 hybrid contribution -0.517 0.394 -0.500 0.820 sum -19.123 -0.250 -0.491 19.131 Atomic orbital electron populations 1.23410 0.76309 1.05641 1.02543 1.86151 1.23478 1.25535 1.89138 1.19138 0.90306 0.86360 1.01849 1.21293 1.01541 0.89798 1.03945 1.21320 0.91437 1.00158 1.05412 1.18904 0.91459 0.84664 0.99046 1.86227 1.37191 1.12849 1.88579 1.23375 0.95934 0.85720 1.02701 1.18474 0.92579 0.90987 1.05994 1.18361 0.90363 0.95352 0.93594 1.21459 0.94834 1.13776 1.00620 1.22792 0.91775 0.94733 0.96476 1.68691 1.38597 1.14684 1.01057 1.18907 0.89074 0.89879 0.91777 1.19891 0.92602 1.35751 1.02147 0.89684 1.26987 0.98671 0.94310 0.99631 1.70238 1.09056 1.30311 1.28444 0.85202 0.77002 0.79459 0.77629 1.18245 1.19102 1.18258 1.21701 0.94787 1.11845 0.99611 1.17828 0.87281 0.85144 1.05189 1.85983 1.71120 1.37887 1.30203 1.22992 0.99882 0.98439 0.83866 0.91229 0.86520 0.91302 0.80583 0.81075 0.87645 0.90798 0.90888 0.87557 0.84522 0.91072 0.88800 0.87515 0.92150 0.95719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -8.71 10.28 -80.34 -0.83 -9.53 16 3 C 0.07 2.07 6.69 22.52 0.15 2.22 16 4 C -0.15 -3.35 9.03 22.37 0.20 -3.15 16 5 C -0.16 -4.07 9.03 22.35 0.20 -3.87 16 6 C 0.11 3.69 6.66 22.72 0.15 3.84 16 7 O -0.33 -12.09 9.73 -92.32 -0.90 -12.99 16 8 C 0.02 0.37 9.81 113.37 1.11 1.48 16 9 C -0.08 -3.30 5.39 -19.88 -0.11 -3.40 16 10 C 0.03 1.48 4.57 -19.89 -0.09 1.39 16 11 C -0.28 -14.30 9.60 22.77 0.22 -14.08 16 12 C 0.11 5.64 11.17 84.79 0.95 6.59 16 13 N -0.52 -31.01 7.85 -189.40 -1.49 -32.50 16 14 C 0.23 13.62 6.55 40.18 0.26 13.88 16 15 C -0.47 -27.16 9.14 23.49 0.21 -26.95 16 16 H 0.09 4.58 7.85 -2.91 -0.02 4.56 16 17 C 0.03 1.35 5.50 85.29 0.47 1.82 16 18 N -0.76 -42.88 11.46 21.84 0.25 -42.62 16 19 Si 0.99 39.60 29.56 68.60 2.03 41.63 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 23 C -0.26 -13.93 9.33 23.09 0.22 -13.72 16 24 C 0.09 3.45 5.71 22.80 0.13 3.58 16 25 O -0.34 -13.48 9.42 -78.48 -0.74 -14.22 16 26 C 0.04 1.46 11.13 113.37 1.26 2.72 16 27 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 28 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 30 H 0.18 2.37 6.27 -2.91 -0.02 2.35 16 31 H 0.17 2.77 6.28 -2.91 -0.02 2.75 16 32 H 0.11 2.11 8.14 -2.39 -0.02 2.10 16 33 H 0.07 1.25 7.66 -2.39 -0.02 1.23 16 34 H 0.07 1.26 7.66 -2.38 -0.02 1.24 16 35 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 36 H 0.14 6.50 8.06 -2.91 -0.02 6.48 16 37 H 0.28 14.21 8.29 -92.71 -0.77 13.44 16 38 H 0.09 4.94 8.06 -2.91 -0.02 4.91 16 39 H 0.11 3.21 8.14 -2.38 -0.02 3.19 16 40 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -77.77 352.94 5.83 -71.93 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 1.05 Total: 24.63 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 6.45 Total: -26.33 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -1.24 Total: -75.12 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -2.46 Total: -36.74 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -77.77 5.83 -71.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239879402.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.085 kcal (2) G-P(sol) polarization free energy of solvation -77.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds