Wall clock time and date at job start Tue Mar 31 2020 10:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35607 * 117.00169 * 2 1 4 4 C 1.38518 * 120.07918 * 359.97438 * 3 2 1 5 5 C 1.38033 * 120.30407 * 180.02562 * 4 3 2 6 6 C 1.39943 * 120.47208 * 0.02562 * 5 4 3 7 7 C 1.48369 * 119.92096 * 180.02562 * 6 5 4 8 8 C 1.39191 * 120.45191 * 179.97438 * 7 6 5 9 9 N 1.31849 * 120.76372 * 179.97438 * 8 7 6 10 10 C 1.32201 * 121.83172 * 0.02562 * 9 8 7 11 11 O 1.35736 * 119.58206 * 179.97438 * 10 9 8 12 12 C 1.42902 * 117.00286 * 0.02562 * 11 10 9 13 13 C 1.39445 * 120.83540 * 359.97438 * 10 9 8 14 14 O 1.35999 * 120.42795 * 180.02562 * 13 10 9 15 15 C 1.42896 * 117.00078 * 179.97438 * 14 13 10 16 16 C 1.38577 * 119.14536 * 359.76439 * 13 10 9 17 17 C 1.38614 * 120.15794 * 359.67391 * 6 5 4 18 18 C 1.40521 * 119.68698 * 0.60493 * 17 6 5 19 19 C 1.41185 * 120.22966 * 179.70064 * 18 17 6 20 20 H 1.07999 * 119.99986 * 154.41489 * 19 18 17 21 21 C 1.39900 * 119.99481 * 334.68886 * 19 18 17 22 22 N 1.30877 * 120.00345 * 342.61000 * 21 19 18 23 23 Si 1.86799 * 119.99784 * 162.60960 * 21 19 18 24 24 H 1.48496 * 109.47265 * 0.02562 * 23 21 19 25 25 H 1.48511 * 109.47245 * 119.99891 * 23 21 19 26 26 H 1.48494 * 109.47469 * 239.99707 * 23 21 19 27 27 H 1.08997 * 109.47699 * 299.99386 * 1 2 3 28 28 H 1.09001 * 109.47350 * 59.99853 * 1 2 3 29 29 H 1.09005 * 109.47677 * 179.97438 * 1 2 3 30 30 H 1.07993 * 119.84833 * 0.03647 * 4 3 2 31 31 H 1.08001 * 119.76248 * 179.97438 * 5 4 3 32 32 H 1.07992 * 119.62035 * 359.97438 * 8 7 6 33 33 H 1.09011 * 109.46685 * 299.99928 * 12 11 10 34 34 H 1.08996 * 109.47299 * 59.99559 * 12 11 10 35 35 H 1.09000 * 109.47546 * 180.02562 * 12 11 10 36 36 H 1.08998 * 109.47449 * 179.97438 * 15 14 13 37 37 H 1.09007 * 109.47240 * 300.00341 * 15 14 13 38 38 H 1.09004 * 109.47391 * 59.99921 * 15 14 13 39 39 H 1.07996 * 120.83577 * 180.27350 * 16 13 10 40 40 H 1.07997 * 120.15625 * 180.32282 * 17 6 5 41 41 H 0.97003 * 120.00422 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2918 2.3710 -0.0005 5 6 1.9137 3.6033 -0.0011 6 6 3.3102 3.6935 -0.0016 7 6 3.9659 5.0245 -0.0016 8 6 5.3540 5.1271 -0.0016 9 7 5.9431 6.3067 -0.0021 10 6 5.2498 7.4323 -0.0021 11 8 5.9034 8.6219 -0.0021 12 6 7.3317 8.5774 -0.0027 13 6 3.8554 7.4129 -0.0022 14 8 3.1505 8.5759 -0.0027 15 6 1.7254 8.4707 -0.0032 16 6 3.1974 6.1934 -0.0071 17 6 4.0824 2.5424 0.0052 18 6 3.4563 1.2844 -0.0002 19 6 4.2317 0.1045 0.0002 20 1 3.8217 -0.8110 0.4004 21 6 5.5333 0.1228 -0.5124 22 7 5.9173 1.1043 -1.2883 23 14 6.7230 -1.2538 -0.0895 24 1 6.0490 -2.2356 0.7975 25 1 7.1590 -1.9320 -1.3367 26 1 7.9069 -0.6886 0.6063 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3635 -1.0277 -0.0005 30 1 0.2134 2.3132 -0.0004 31 1 1.3182 4.5044 -0.0019 32 1 5.9555 4.2302 -0.0012 33 1 7.6792 8.0523 0.8872 34 1 7.6786 8.0526 -0.8928 35 1 7.7270 9.5932 -0.0022 36 1 1.2873 9.4688 -0.0032 37 1 1.4012 7.9312 -0.8932 38 1 1.4004 7.9317 0.8867 39 1 2.1185 6.1465 -0.0117 40 1 5.1601 2.6121 0.0100 41 1 6.8197 1.1168 -1.6441 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240620174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:38 Heat of formation + Delta-G solvation = -52.196021 kcal Electronic energy + Delta-G solvation = -25693.008936 eV Core-core repulsion = 21925.304210 eV Total energy + Delta-G solvation = -3767.704725 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.60487 -38.80330 -38.28924 -37.52522 -36.04360 -33.88229 -31.89156 -30.63764 -29.91428 -28.41457 -27.18065 -26.86231 -26.26765 -25.30732 -22.83890 -22.69361 -20.83187 -20.12787 -18.34919 -17.71001 -17.13705 -16.90236 -16.50965 -16.10200 -15.30509 -15.15408 -14.86097 -14.74598 -14.63990 -14.54366 -14.03477 -13.33525 -13.15932 -13.12181 -12.81093 -12.58938 -12.27503 -11.88324 -11.77101 -11.51020 -11.44567 -11.30060 -11.22729 -11.13714 -10.97506 -10.88587 -10.49059 -10.21499 -10.19439 -9.57942 -9.33234 -9.26341 -9.07318 -7.92399 -7.60346 -6.88987 -6.63012 -4.33641 1.31352 1.54689 2.67666 2.89771 3.08368 3.13198 3.15532 3.22167 3.44704 3.92777 4.13814 4.40069 4.62211 4.75851 4.97124 5.17071 5.19015 5.28332 5.38332 5.42454 5.48076 5.49355 5.50105 5.62115 5.70076 5.75151 5.77201 5.91635 6.07608 6.14880 6.18301 6.45511 6.60648 6.78275 7.01972 7.10735 7.18586 7.23700 7.52045 7.55990 7.67564 7.84278 8.04568 8.21854 8.27063 8.59316 8.74853 8.94342 10.14355 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.012472 B = 0.004337 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.466344 B = 6454.739747 C = 8599.257969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.310 6.310 3 C 0.024 3.976 4 C -0.178 4.178 5 C -0.192 4.192 6 C -0.066 4.066 7 C -0.046 4.046 8 C 0.102 3.898 9 N -0.500 5.500 10 C 0.272 3.728 11 O -0.305 6.305 12 C 0.042 3.958 13 C 0.062 3.938 14 O -0.306 6.306 15 C 0.026 3.974 16 C -0.142 4.142 17 C -0.124 4.124 18 C 0.095 3.905 19 C -0.443 4.443 20 H 0.084 0.916 21 C 0.074 3.926 22 N -0.796 5.796 23 Si 0.908 3.092 24 H -0.260 1.260 25 H -0.275 1.275 26 H -0.271 1.271 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.170 0.830 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.146 0.854 40 H 0.132 0.868 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.619 8.839 1.834 9.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.224 6.224 3 C -0.021 4.021 4 C -0.197 4.197 5 C -0.211 4.211 6 C -0.068 4.068 7 C -0.049 4.049 8 C -0.054 4.054 9 N -0.223 5.223 10 C 0.092 3.908 11 O -0.213 6.213 12 C -0.053 4.053 13 C 0.014 3.986 14 O -0.219 6.219 15 C -0.070 4.070 16 C -0.168 4.168 17 C -0.143 4.143 18 C 0.093 3.907 19 C -0.473 4.473 20 H 0.102 0.898 21 C -0.143 4.143 22 N -0.422 5.422 23 Si 0.733 3.267 24 H -0.184 1.184 25 H -0.200 1.200 26 H -0.196 1.196 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.187 0.813 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.163 0.837 40 H 0.150 0.850 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.447 9.253 1.688 9.719 hybrid contribution -0.700 -0.747 -0.009 1.024 sum -3.147 8.506 1.680 9.224 Atomic orbital electron populations 1.22758 0.81589 1.01894 0.99985 1.85968 1.18345 1.28203 1.89895 1.19365 0.92417 0.82667 1.07614 1.20532 0.97530 0.92662 1.09011 1.20084 0.92857 0.95359 1.12829 1.18179 0.92848 0.90057 1.05676 1.19732 0.93454 0.93577 0.98086 1.22639 0.92265 0.93615 0.96837 1.67349 1.39424 0.98025 1.17455 1.19037 0.86156 0.85617 1.00017 1.86258 1.21307 1.24862 1.88832 1.22769 0.78001 1.02277 1.02294 1.18790 0.89053 0.86204 1.04527 1.86142 1.19146 1.27252 1.89360 1.23052 0.78856 1.03647 1.01445 1.21585 1.00913 0.90143 1.04125 1.21208 0.99506 0.89594 1.04002 1.16960 0.87309 0.93889 0.92575 1.19456 0.96719 0.96675 1.34401 0.89755 1.25889 0.98814 0.96993 0.92640 1.69814 1.19283 1.30811 1.22294 0.86248 0.79942 0.81226 0.79312 1.18353 1.20006 1.19641 0.94141 0.94062 0.89918 0.88268 0.88993 0.81262 0.92606 0.92554 0.89194 0.88366 0.92690 0.92713 0.83701 0.85025 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.81 101.05 0.99 1.54 16 2 O -0.31 -6.87 9.77 -18.52 -0.18 -7.05 16 3 C 0.02 0.57 6.72 -38.29 -0.26 0.31 16 4 C -0.18 -3.77 9.01 -39.55 -0.36 -4.13 16 5 C -0.19 -3.98 9.43 -39.02 -0.37 -4.35 16 6 C -0.07 -1.46 5.87 -104.95 -0.62 -2.08 16 7 C -0.05 -0.91 5.89 -104.76 -0.62 -1.53 16 8 C 0.10 1.99 10.58 -17.19 -0.18 1.81 16 9 N -0.50 -9.38 9.19 -12.93 -0.12 -9.50 16 10 C 0.27 4.95 7.51 -16.94 -0.13 4.82 16 11 O -0.30 -5.08 10.26 -33.48 -0.34 -5.43 16 12 C 0.04 0.54 10.38 101.05 1.05 1.59 16 13 C 0.06 1.07 6.72 -39.01 -0.26 0.81 16 14 O -0.31 -4.76 10.29 -34.30 -0.35 -5.11 16 15 C 0.03 0.28 9.83 101.05 0.99 1.27 16 16 C -0.14 -2.47 8.49 -38.84 -0.33 -2.80 16 17 C -0.12 -3.00 8.06 -38.58 -0.31 -3.31 16 18 C 0.10 2.45 5.57 -106.72 -0.59 1.85 16 19 C -0.44 -11.47 8.71 -37.84 -0.33 -11.80 16 20 H 0.08 2.18 7.65 -52.49 -0.40 1.78 16 21 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 22 N -0.80 -19.63 10.98 55.55 0.61 -19.02 16 23 Si 0.91 18.32 29.59 -169.99 -5.03 13.28 16 24 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 27 H 0.04 0.60 7.66 -51.93 -0.40 0.20 16 28 H 0.04 0.62 7.65 -51.93 -0.40 0.22 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.10 1.80 6.27 -52.49 -0.33 1.47 16 31 H 0.09 1.64 6.23 -52.49 -0.33 1.31 16 32 H 0.17 3.33 6.19 -52.49 -0.32 3.01 16 33 H 0.06 0.71 8.10 -51.92 -0.42 0.29 16 34 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.56 7.68 -51.92 -0.40 0.16 16 38 H 0.05 0.55 7.70 -51.93 -0.40 0.15 16 39 H 0.15 2.19 4.67 -52.49 -0.25 1.95 16 40 H 0.13 3.22 4.34 -52.49 -0.23 2.99 16 41 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 LS Contribution 344.09 15.07 5.19 5.19 Total: -1.00 -29.16 344.09 -6.33 -35.49 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -4.69 Total: 6.44 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -1.41 Total: -14.29 kcal Atomic # 7 Polarization: -29.01 SS G_CDS: 0.49 Total: -28.52 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.88 Total: -17.59 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.16 -6.33 -35.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240620174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.707 kcal (2) G-P(sol) polarization free energy of solvation -29.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds