Wall clock time and date at job start Tue Mar 31 2020 10:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35607 * 117.00169 * 2 1 4 4 C 1.38518 * 120.07918 * 359.97438 * 3 2 1 5 5 C 1.38033 * 120.30407 * 180.02562 * 4 3 2 6 6 C 1.39943 * 120.47208 * 0.02562 * 5 4 3 7 7 C 1.48369 * 119.92096 * 180.02562 * 6 5 4 8 8 C 1.39191 * 120.45191 * 179.97438 * 7 6 5 9 9 N 1.31849 * 120.76372 * 179.97438 * 8 7 6 10 10 C 1.32201 * 121.83172 * 0.02562 * 9 8 7 11 11 O 1.35736 * 119.58206 * 179.97438 * 10 9 8 12 12 C 1.42902 * 117.00286 * 0.02562 * 11 10 9 13 13 C 1.39445 * 120.83540 * 359.97438 * 10 9 8 14 14 O 1.35999 * 120.42795 * 180.02562 * 13 10 9 15 15 C 1.42896 * 117.00078 * 179.97438 * 14 13 10 16 16 C 1.38577 * 119.14536 * 359.76439 * 13 10 9 17 17 C 1.38614 * 120.15794 * 359.67391 * 6 5 4 18 18 C 1.40521 * 119.68698 * 0.60493 * 17 6 5 19 19 C 1.41185 * 120.22966 * 179.70064 * 18 17 6 20 20 H 1.07999 * 119.99986 * 154.41489 * 19 18 17 21 21 C 1.39900 * 119.99481 * 334.68886 * 19 18 17 22 22 N 1.30877 * 120.00345 * 342.61000 * 21 19 18 23 23 Si 1.86799 * 119.99784 * 162.60960 * 21 19 18 24 24 H 1.48496 * 109.47265 * 0.02562 * 23 21 19 25 25 H 1.48511 * 109.47245 * 119.99891 * 23 21 19 26 26 H 1.48494 * 109.47469 * 239.99707 * 23 21 19 27 27 H 1.08997 * 109.47699 * 299.99386 * 1 2 3 28 28 H 1.09001 * 109.47350 * 59.99853 * 1 2 3 29 29 H 1.09005 * 109.47677 * 179.97438 * 1 2 3 30 30 H 1.07993 * 119.84833 * 0.03647 * 4 3 2 31 31 H 1.08001 * 119.76248 * 179.97438 * 5 4 3 32 32 H 1.07992 * 119.62035 * 359.97438 * 8 7 6 33 33 H 1.09011 * 109.46685 * 299.99928 * 12 11 10 34 34 H 1.08996 * 109.47299 * 59.99559 * 12 11 10 35 35 H 1.09000 * 109.47546 * 180.02562 * 12 11 10 36 36 H 1.08998 * 109.47449 * 179.97438 * 15 14 13 37 37 H 1.09007 * 109.47240 * 300.00341 * 15 14 13 38 38 H 1.09004 * 109.47391 * 59.99921 * 15 14 13 39 39 H 1.07996 * 120.83577 * 180.27350 * 16 13 10 40 40 H 1.07997 * 120.15625 * 180.32282 * 17 6 5 41 41 H 0.97003 * 120.00422 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2918 2.3710 -0.0005 5 6 1.9137 3.6033 -0.0011 6 6 3.3102 3.6935 -0.0016 7 6 3.9659 5.0245 -0.0016 8 6 5.3540 5.1271 -0.0016 9 7 5.9431 6.3067 -0.0021 10 6 5.2498 7.4323 -0.0021 11 8 5.9034 8.6219 -0.0021 12 6 7.3317 8.5774 -0.0027 13 6 3.8554 7.4129 -0.0022 14 8 3.1505 8.5759 -0.0027 15 6 1.7254 8.4707 -0.0032 16 6 3.1974 6.1934 -0.0071 17 6 4.0824 2.5424 0.0052 18 6 3.4563 1.2844 -0.0002 19 6 4.2317 0.1045 0.0002 20 1 3.8217 -0.8110 0.4004 21 6 5.5333 0.1228 -0.5124 22 7 5.9173 1.1043 -1.2883 23 14 6.7230 -1.2538 -0.0895 24 1 6.0490 -2.2356 0.7975 25 1 7.1590 -1.9320 -1.3367 26 1 7.9069 -0.6886 0.6063 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3635 -1.0277 -0.0005 30 1 0.2134 2.3132 -0.0004 31 1 1.3182 4.5044 -0.0019 32 1 5.9555 4.2302 -0.0012 33 1 7.6792 8.0523 0.8872 34 1 7.6786 8.0526 -0.8928 35 1 7.7270 9.5932 -0.0022 36 1 1.2873 9.4688 -0.0032 37 1 1.4012 7.9312 -0.8932 38 1 1.4004 7.9317 0.8867 39 1 2.1185 6.1465 -0.0117 40 1 5.1601 2.6121 0.0100 41 1 6.8197 1.1168 -1.6441 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240620174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:37 Heat of formation + Delta-G solvation = -70.408747 kcal Electronic energy + Delta-G solvation = -25693.798699 eV Core-core repulsion = 21925.304210 eV Total energy + Delta-G solvation = -3768.494488 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.96331 -40.43692 -39.48880 -38.91685 -37.63209 -35.63189 -33.41626 -32.00048 -31.64044 -29.79387 -28.26617 -28.10695 -27.67303 -27.02941 -24.31192 -24.07851 -22.47336 -21.71425 -19.72235 -19.26966 -18.56906 -18.27121 -18.15117 -17.32892 -16.96072 -16.29332 -16.23413 -16.21201 -16.17127 -15.95281 -15.39741 -14.71668 -14.56140 -14.42096 -14.33290 -14.18686 -13.72922 -13.49246 -13.09231 -12.95103 -12.78918 -12.75903 -12.49810 -12.38543 -12.33663 -12.23880 -12.08874 -11.90744 -11.65455 -11.24581 -11.05066 -10.76718 -10.53948 -9.43347 -9.29518 -8.64445 -8.27631 -6.21023 -0.18510 0.15269 0.96304 1.22471 1.40833 1.51842 1.54974 2.01172 2.24896 2.29876 2.58811 2.89865 2.92963 3.34925 3.66479 3.71720 3.89856 3.98928 4.12689 4.36063 4.40918 4.43330 4.44910 4.45269 4.49811 4.52000 4.61431 4.70268 4.76495 4.77202 4.79423 4.96553 4.99632 5.25383 5.26815 5.45793 5.50821 5.81051 5.82571 5.94074 6.10360 6.28577 6.38328 6.48251 6.76946 6.82225 6.93024 7.22370 8.38384 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.012472 B = 0.004337 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.466344 B = 6454.739747 C = 8599.257969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.339 6.339 3 C 0.010 3.990 4 C -0.179 4.179 5 C -0.181 4.181 6 C -0.072 4.072 7 C -0.064 4.064 8 C 0.090 3.910 9 N -0.507 5.507 10 C 0.264 3.736 11 O -0.312 6.312 12 C 0.037 3.963 13 C 0.067 3.933 14 O -0.316 6.316 15 C 0.013 3.987 16 C -0.131 4.131 17 C -0.143 4.143 18 C 0.057 3.943 19 C -0.482 4.482 20 H 0.069 0.931 21 C 0.038 3.962 22 N -0.826 5.826 23 Si 0.974 3.026 24 H -0.263 1.263 25 H -0.268 1.268 26 H -0.263 1.263 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.109 0.891 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.156 0.844 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.172 0.828 40 H 0.118 0.882 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.343 10.727 2.007 12.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.254 6.254 3 C -0.035 4.035 4 C -0.198 4.198 5 C -0.201 4.201 6 C -0.073 4.073 7 C -0.067 4.067 8 C -0.065 4.065 9 N -0.230 5.230 10 C 0.083 3.917 11 O -0.220 6.220 12 C -0.058 4.058 13 C 0.019 3.981 14 O -0.229 6.229 15 C -0.082 4.082 16 C -0.156 4.156 17 C -0.163 4.163 18 C 0.055 3.945 19 C -0.512 4.512 20 H 0.087 0.913 21 C -0.176 4.176 22 N -0.453 5.453 23 Si 0.796 3.204 24 H -0.186 1.186 25 H -0.193 1.193 26 H -0.188 1.188 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.128 0.872 30 H 0.152 0.848 31 H 0.148 0.852 32 H 0.173 0.827 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.189 0.811 40 H 0.136 0.864 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.196 11.154 1.862 12.061 hybrid contribution -0.335 -1.092 -0.057 1.144 sum -4.531 10.062 1.805 11.181 Atomic orbital electron populations 1.23113 0.78482 1.04256 1.01170 1.85917 1.21641 1.27952 1.89878 1.19574 0.92278 0.84141 1.07488 1.20905 0.99230 0.91825 1.07861 1.20563 0.92556 0.96763 1.10169 1.18405 0.93654 0.90360 1.04928 1.19642 0.93575 0.93466 0.99976 1.22470 0.92520 0.93612 0.97873 1.67308 1.39767 0.98014 1.17960 1.19378 0.87087 0.85824 0.99371 1.86261 1.23189 1.24020 1.88493 1.23049 0.76128 1.04633 1.02006 1.18822 0.89068 0.86881 1.03365 1.86148 1.21631 1.26224 1.88860 1.23458 0.76227 1.06072 1.02395 1.21737 1.01942 0.89099 1.02846 1.21185 0.99308 0.90341 1.05445 1.17346 0.88924 0.94365 0.93903 1.19518 0.98358 0.96551 1.36759 0.91302 1.26575 0.99717 0.99263 0.92038 1.69860 1.19880 1.32422 1.23174 0.85274 0.77778 0.78309 0.79085 1.18641 1.19266 1.18764 0.92593 0.92923 0.87225 0.84789 0.85209 0.82689 0.92805 0.92943 0.85502 0.85389 0.91747 0.91604 0.81094 0.86400 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.81 113.37 1.11 1.86 16 2 O -0.34 -15.13 9.77 -89.18 -0.87 -16.01 16 3 C 0.01 0.48 6.72 23.11 0.16 0.64 16 4 C -0.18 -7.27 9.01 22.29 0.20 -7.07 16 5 C -0.18 -7.14 9.43 22.63 0.21 -6.93 16 6 C -0.07 -3.19 5.87 -20.08 -0.12 -3.31 16 7 C -0.06 -2.52 5.89 -19.95 -0.12 -2.64 16 8 C 0.09 3.62 10.58 84.92 0.90 4.52 16 9 N -0.51 -19.19 9.19 -307.68 -2.83 -22.01 16 10 C 0.26 9.38 7.51 84.93 0.64 10.02 16 11 O -0.31 -9.94 10.26 -76.67 -0.79 -10.73 16 12 C 0.04 0.88 10.38 113.37 1.18 2.06 16 13 C 0.07 2.19 6.72 22.64 0.15 2.34 16 14 O -0.32 -8.87 10.29 -79.61 -0.82 -9.69 16 15 C 0.01 0.23 9.83 113.37 1.11 1.34 16 16 C -0.13 -4.26 8.49 22.75 0.19 -4.07 16 17 C -0.14 -7.27 8.06 22.92 0.18 -7.08 16 18 C 0.06 3.06 5.57 -21.23 -0.12 2.94 16 19 C -0.48 -26.41 8.71 23.40 0.20 -26.21 16 20 H 0.07 3.81 7.65 -2.91 -0.02 3.79 16 21 C 0.04 1.93 5.14 85.24 0.44 2.37 16 22 N -0.83 -42.90 10.98 21.82 0.24 -42.66 16 23 Si 0.97 39.11 29.59 68.60 2.03 41.14 16 24 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 26 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 27 H 0.06 1.51 7.66 -2.39 -0.02 1.49 16 28 H 0.05 1.46 7.65 -2.39 -0.02 1.44 16 29 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 30 H 0.13 4.39 6.27 -2.91 -0.02 4.37 16 31 H 0.13 4.05 6.23 -2.91 -0.02 4.03 16 32 H 0.16 6.58 6.19 -2.91 -0.02 6.56 16 33 H 0.05 1.32 8.10 -2.38 -0.02 1.30 16 34 H 0.05 1.30 8.10 -2.39 -0.02 1.29 16 35 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.05 7.68 -2.38 -0.02 1.03 16 38 H 0.07 1.05 7.70 -2.39 -0.02 1.03 16 39 H 0.17 4.49 4.67 -2.91 -0.01 4.47 16 40 H 0.12 6.18 4.34 -2.91 -0.01 6.17 16 41 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 Total: -1.00 -66.40 344.09 4.37 -62.03 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 1.08 Total: 27.15 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 6.33 Total: -29.23 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -2.59 Total: -64.67 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -2.48 Total: -36.42 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -66.40 4.37 -62.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240620174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.381 kcal (2) G-P(sol) polarization free energy of solvation -66.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds