Wall clock time and date at job start Tue Mar 31 2020 10:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35876 * 116.99756 * 2 1 4 4 C 1.39044 * 119.88017 * 0.02562 * 3 2 1 5 5 C 1.37683 * 120.26480 * 179.97438 * 4 3 2 6 6 C 1.39878 * 120.02643 * 359.97438 * 5 4 3 7 7 C 1.47512 * 120.11548 * 179.97438 * 6 5 4 8 8 N 1.32707 * 120.00620 * 127.62901 * 7 6 5 9 9 C 1.31715 * 121.70188 * 180.31221 * 8 7 6 10 10 C 1.38892 * 121.52106 * 359.67643 * 9 8 7 11 11 C 1.36870 * 119.82889 * 0.02732 * 10 9 8 12 12 C 1.41118 * 118.40941 * 359.97438 * 11 10 9 13 13 C 1.40810 * 120.72023 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99427 * 147.40267 * 13 12 11 15 15 C 1.40013 * 120.00625 * 327.11828 * 13 12 11 16 16 N 1.30803 * 120.00523 * 166.62927 * 15 13 12 17 17 Si 1.86800 * 119.99688 * 346.63677 * 15 13 12 18 18 H 1.48498 * 109.47648 * 86.22838 * 17 15 13 19 19 H 1.48501 * 109.47002 * 206.22600 * 17 15 13 20 20 H 1.48504 * 109.47000 * 326.22237 * 17 15 13 21 21 C 1.40237 * 119.76521 * 0.25227 * 6 5 4 22 22 O 1.35844 * 120.13112 * 179.74189 * 21 6 5 23 23 C 1.42897 * 117.00033 * 90.00417 * 22 21 6 24 24 C 1.38723 * 119.73426 * 359.49391 * 21 6 5 25 25 O 1.36098 * 120.01852 * 180.25046 * 24 21 6 26 26 C 1.42902 * 117.00257 * 270.25814 * 25 24 21 27 27 H 1.08997 * 109.47534 * 59.99957 * 1 2 3 28 28 H 1.09004 * 109.47115 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47203 * 299.99739 * 1 2 3 30 30 H 1.07994 * 119.87077 * 359.95902 * 4 3 2 31 31 H 1.08001 * 119.99085 * 180.02562 * 5 4 3 32 32 H 1.07997 * 119.24090 * 179.69550 * 9 8 7 33 33 H 1.07998 * 120.08439 * 179.97438 * 10 9 8 34 34 H 1.08003 * 120.79362 * 179.97438 * 11 10 9 35 35 H 0.97003 * 120.00633 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.47686 * 180.02562 * 23 22 21 37 37 H 1.09002 * 109.46855 * 299.99895 * 23 22 21 38 38 H 1.08999 * 109.47462 * 59.99521 * 23 22 21 39 39 H 1.08995 * 109.47488 * 179.97438 * 26 25 24 40 40 H 1.09003 * 109.46824 * 299.99962 * 26 25 24 41 41 H 1.09005 * 109.47187 * 59.99053 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2861 2.3752 0.0005 5 6 1.9028 3.6062 0.0011 6 6 3.2991 3.6894 0.0016 7 6 3.9620 5.0072 0.0016 8 7 4.8866 5.2850 0.9121 9 6 5.4952 6.4527 0.9467 10 6 5.2036 7.4510 0.0262 11 6 4.2639 7.2293 -0.9439 12 6 3.6151 5.9765 -0.9763 13 6 2.6401 5.6964 -1.9529 14 1 2.5273 4.6907 -2.3303 15 6 1.8130 6.7202 -2.4304 16 7 1.0954 6.5325 -3.5078 17 14 1.7345 8.3544 -1.5290 18 1 2.8248 9.2393 -2.0122 19 1 0.4222 8.9997 -1.7873 20 1 1.8940 8.1235 -0.0707 21 6 4.0666 2.5157 -0.0037 22 8 5.4231 2.5880 -0.0085 23 6 6.0756 2.6196 1.2624 24 6 3.4349 1.2806 0.0011 25 8 4.1741 0.1379 0.0011 26 6 4.5270 -0.4066 -1.2722 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2079 2.3139 0.0003 31 1 1.3084 4.5078 0.0019 32 1 6.2382 6.6380 1.7082 33 1 5.7164 8.4002 0.0763 34 1 4.0247 7.9947 -1.6673 35 1 0.5226 7.2420 -3.8389 36 1 7.1541 2.6778 1.1158 37 1 5.7378 3.4915 1.8225 38 1 5.8324 1.7141 1.8183 39 1 5.1142 -1.3137 -1.1294 40 1 3.6208 -0.6439 -1.8296 41 1 5.1153 0.3229 -1.8289 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240928202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:54 Heat of formation + Delta-G solvation = -65.628999 kcal Electronic energy + Delta-G solvation = -26928.165088 eV Core-core repulsion = 23159.877865 eV Total energy + Delta-G solvation = -3768.287223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.74878 -40.43420 -39.60057 -38.49670 -37.25776 -35.84970 -33.23433 -32.97260 -31.09354 -30.14855 -28.32188 -27.98761 -27.25840 -27.16811 -24.43406 -23.66280 -22.83294 -22.01760 -19.60752 -19.39964 -18.56909 -18.15057 -17.62523 -17.35911 -17.05945 -16.65612 -16.38348 -16.23947 -15.87614 -15.56172 -15.54005 -15.30642 -15.14075 -14.42478 -14.22099 -14.01922 -13.87763 -13.61708 -13.33004 -13.20638 -13.08945 -12.71930 -12.64646 -12.52240 -12.12294 -12.00151 -11.94473 -11.68856 -11.39787 -11.25143 -10.58690 -10.30064 -9.96332 -9.77631 -9.57386 -8.93019 -8.85930 -6.52758 0.01793 0.09177 0.68413 0.85862 1.24048 1.36287 1.45246 2.06265 2.13888 2.36995 2.62190 2.83840 3.14077 3.49028 3.69625 3.98490 4.03470 4.27590 4.32701 4.41284 4.41911 4.42725 4.44971 4.49287 4.51571 4.57984 4.60847 4.65632 4.71964 4.73792 4.78874 4.89407 5.05618 5.11085 5.18833 5.37722 5.40068 5.48752 5.63713 5.77667 5.96221 6.10420 6.24825 6.42254 6.56828 6.68541 6.76118 7.56048 8.12868 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013400 B = 0.005783 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.022677 B = 4840.688908 C = 6245.430049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.320 6.320 3 C 0.114 3.886 4 C -0.197 4.197 5 C -0.047 4.047 6 C -0.055 4.055 7 C 0.040 3.960 8 N -0.451 5.451 9 C -0.027 4.027 10 C -0.122 4.122 11 C -0.220 4.220 12 C 0.044 3.956 13 C -0.447 4.447 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.833 5.833 17 Si 0.959 3.041 18 H -0.252 1.252 19 H -0.274 1.274 20 H -0.260 1.260 21 C 0.117 3.883 22 O -0.343 6.343 23 C 0.040 3.960 24 C 0.021 3.979 25 O -0.332 6.332 26 C 0.036 3.964 27 H 0.061 0.939 28 H 0.126 0.874 29 H 0.068 0.932 30 H 0.163 0.837 31 H 0.129 0.871 32 H 0.165 0.835 33 H 0.145 0.855 34 H 0.117 0.883 35 H 0.297 0.703 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.119 0.881 40 H 0.045 0.955 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 -6.573 6.255 9.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.233 6.233 3 C 0.068 3.932 4 C -0.216 4.216 5 C -0.066 4.066 6 C -0.057 4.057 7 C -0.099 4.099 8 N -0.159 5.159 9 C -0.186 4.186 10 C -0.141 4.141 11 C -0.245 4.245 12 C 0.039 3.961 13 C -0.476 4.476 14 H 0.081 0.919 15 C -0.162 4.162 16 N -0.458 5.458 17 Si 0.782 3.218 18 H -0.177 1.177 19 H -0.200 1.200 20 H -0.184 1.184 21 C 0.071 3.929 22 O -0.260 6.260 23 C -0.054 4.054 24 C -0.024 4.024 25 O -0.249 6.249 26 C -0.058 4.058 27 H 0.080 0.920 28 H 0.144 0.856 29 H 0.086 0.914 30 H 0.181 0.819 31 H 0.147 0.853 32 H 0.182 0.818 33 H 0.163 0.837 34 H 0.135 0.865 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.137 0.863 40 H 0.064 0.936 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.057 -7.450 6.641 9.981 hybrid contribution -0.638 1.547 -0.939 1.919 sum -0.581 -5.903 5.702 8.227 Atomic orbital electron populations 1.23430 0.76282 1.05832 1.02406 1.86064 1.23499 1.25344 1.88430 1.19232 0.90636 0.85580 0.97785 1.21268 1.01307 0.90399 1.08619 1.21057 0.92808 0.97970 0.94745 1.18724 0.93073 0.90824 1.03085 1.19526 1.00383 0.94785 0.95245 1.67151 1.05421 1.20913 1.22395 1.22470 1.04078 0.89774 1.02229 1.21779 0.96938 1.00592 0.94834 1.21487 1.01425 0.98786 1.02850 1.18615 0.93250 0.92499 0.91715 1.19169 1.14546 0.96955 1.16925 0.91862 1.26726 0.93243 1.02555 0.93705 1.69662 1.21273 1.36609 1.18304 0.85646 0.77907 0.77853 0.80370 1.17701 1.19988 1.18430 1.18924 0.83827 0.90197 0.99906 1.85796 1.14761 1.94041 1.31414 1.23194 0.97401 1.01291 0.83483 1.18172 0.87450 0.85782 1.11001 1.85991 1.70773 1.37585 1.30558 1.23106 0.99813 0.98908 0.83956 0.92018 0.85606 0.91382 0.81935 0.85314 0.81829 0.83717 0.86531 0.89252 0.88042 0.91559 0.93950 0.86252 0.93615 0.94698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.81 113.37 1.11 1.40 16 2 O -0.32 -9.78 10.26 -77.99 -0.80 -10.58 16 3 C 0.11 4.10 6.70 22.67 0.15 4.25 16 4 C -0.20 -6.88 9.01 22.33 0.20 -6.68 16 5 C -0.05 -1.94 8.22 22.54 0.19 -1.76 16 6 C -0.06 -2.54 5.01 -19.95 -0.10 -2.64 16 7 C 0.04 1.93 6.00 42.39 0.25 2.18 16 8 N -0.45 -20.07 7.42 -183.03 -1.36 -21.42 16 9 C -0.03 -1.04 11.16 84.87 0.95 -0.09 16 10 C -0.12 -4.72 10.03 22.11 0.22 -4.50 16 11 C -0.22 -9.95 7.31 22.66 0.17 -9.79 16 12 C 0.04 2.20 5.08 -21.01 -0.11 2.09 16 13 C -0.45 -23.63 7.62 23.33 0.18 -23.45 16 14 H 0.06 3.69 7.27 -2.91 -0.02 3.67 16 15 C 0.05 2.71 5.46 85.28 0.47 3.18 16 16 N -0.83 -42.59 13.93 21.84 0.30 -42.29 16 17 Si 0.96 39.78 24.58 68.60 1.69 41.47 16 18 H -0.25 -9.81 6.33 99.48 0.63 -9.18 16 19 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 20 H -0.26 -11.19 7.07 99.48 0.70 -10.49 16 21 C 0.12 5.10 5.73 22.87 0.13 5.23 16 22 O -0.34 -14.77 9.50 -77.71 -0.74 -15.51 16 23 C 0.04 1.40 10.68 113.37 1.21 2.61 16 24 C 0.02 0.83 5.74 22.59 0.13 0.96 16 25 O -0.33 -12.27 9.97 -70.36 -0.70 -12.97 16 26 C 0.04 1.07 11.13 113.37 1.26 2.34 16 27 H 0.06 1.18 7.65 -2.39 -0.02 1.16 16 28 H 0.13 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.07 1.19 7.65 -2.39 -0.02 1.17 16 30 H 0.16 4.43 6.27 -2.91 -0.02 4.41 16 31 H 0.13 5.46 7.52 -2.91 -0.02 5.44 16 32 H 0.16 5.07 8.06 -2.91 -0.02 5.05 16 33 H 0.15 4.38 8.06 -2.91 -0.02 4.36 16 34 H 0.12 5.13 4.62 -2.91 -0.01 5.11 16 35 H 0.30 13.59 8.30 -92.71 -0.77 12.82 16 36 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.07 2.46 5.98 -2.39 -0.01 2.45 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -64.61 341.08 5.78 -58.82 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.98 Total: 27.15 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 6.41 Total: -24.67 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -1.05 Total: -63.71 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -2.24 Total: -39.06 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 1.69 Total: 41.47 kcal Total: -64.61 5.78 -58.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240928202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.805 kcal (2) G-P(sol) polarization free energy of solvation -64.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds