Wall clock time and date at job start Tue Mar 31 2020 10:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35881 * 116.99733 * 2 1 4 4 C 1.39037 * 119.89231 * 0.02562 * 3 2 1 5 5 C 1.37724 * 120.25712 * 179.97438 * 4 3 2 6 6 C 1.39803 * 120.03231 * 0.02562 * 5 4 3 7 7 C 1.47709 * 120.11092 * 180.02562 * 6 5 4 8 8 C 1.40408 * 120.35332 * 55.47680 * 7 6 5 9 9 C 1.36574 * 118.60202 * 179.74870 * 8 7 6 10 10 C 1.40945 * 119.26743 * 0.52273 * 9 8 7 11 11 C 1.40882 * 119.66733 * 179.71741 * 10 9 8 12 12 H 1.07997 * 120.00070 * 0.02562 * 11 10 9 13 13 C 1.40050 * 119.99810 * 180.02562 * 11 10 9 14 14 N 1.30753 * 119.99897 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99926 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47298 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47223 * 119.99441 * 15 13 11 18 18 H 1.48501 * 109.46984 * 239.99809 * 15 13 11 19 19 N 1.33812 * 120.66087 * 359.73889 * 10 9 8 20 20 C 1.31162 * 121.51125 * 359.97438 * 19 10 9 21 21 C 1.40184 * 119.77818 * 0.02562 * 6 5 4 22 22 O 1.35879 * 120.12421 * 180.02562 * 21 6 5 23 23 C 1.42900 * 116.99707 * 93.60436 * 22 21 6 24 24 C 1.38712 * 119.74888 * 359.72869 * 21 6 5 25 25 O 1.36096 * 120.01987 * 180.29839 * 24 21 6 26 26 C 1.42898 * 116.99924 * 270.20674 * 25 24 21 27 27 H 1.09010 * 109.47423 * 300.00001 * 1 2 3 28 28 H 1.08998 * 109.47358 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47657 * 59.99669 * 1 2 3 30 30 H 1.07997 * 119.87316 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.98661 * 180.02562 * 5 4 3 32 32 H 1.07998 * 120.70301 * 359.97438 * 8 7 6 33 33 H 1.08001 * 120.36623 * 180.26137 * 9 8 7 34 34 H 0.96999 * 120.00016 * 180.02562 * 14 13 11 35 35 H 1.08000 * 119.66415 * 180.02562 * 20 19 10 36 36 H 1.09013 * 109.46635 * 184.88109 * 23 22 21 37 37 H 1.08994 * 109.47392 * 304.87710 * 23 22 21 38 38 H 1.08995 * 109.47264 * 64.88397 * 23 22 21 39 39 H 1.08997 * 109.47216 * 300.00033 * 26 25 24 40 40 H 1.08998 * 109.47004 * 60.00070 * 26 25 24 41 41 H 1.09003 * 109.47369 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2863 2.3753 0.0005 5 6 1.9037 3.6065 0.0011 6 6 3.2993 3.6894 0.0005 7 6 3.9632 5.0088 0.0017 8 6 3.6692 5.9502 1.0011 9 6 4.3078 7.1571 0.9707 10 6 5.2284 7.4237 -0.0626 11 6 5.8875 8.6681 -0.1055 12 1 5.6865 9.4119 0.6513 13 6 6.8032 8.9406 -1.1295 14 7 7.0468 8.0398 -2.0454 15 14 7.6776 10.5903 -1.1860 16 1 7.2301 11.4271 -0.0437 17 1 9.1445 10.3763 -1.0986 18 1 7.3528 11.2793 -2.4607 19 7 5.4824 6.5068 -1.0036 20 6 4.8897 5.3368 -0.9985 21 6 4.0664 2.5161 -0.0011 22 8 5.4233 2.5884 -0.0011 23 6 6.0754 2.5414 1.2696 24 6 3.4351 1.2809 0.0035 25 8 4.1745 0.1384 0.0081 26 6 4.5311 -0.4087 -1.2629 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 0.2081 2.3144 0.0005 31 1 1.3095 4.5083 0.0019 32 1 2.9558 5.7234 1.7796 33 1 4.1063 7.9005 1.7278 34 1 7.6813 8.2284 -2.7544 35 1 5.1174 4.6189 -1.7725 36 1 7.1461 2.6950 1.1343 37 1 5.6745 3.3245 1.9130 38 1 5.9033 1.5688 1.7305 39 1 3.6266 -0.6474 -1.8224 40 1 5.1209 0.3196 -1.8194 41 1 5.1181 -1.3154 -1.1165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240932726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:20 Heat of formation + Delta-G solvation = -47.022013 kcal Electronic energy + Delta-G solvation = -26056.073181 eV Core-core repulsion = 22288.592818 eV Total energy + Delta-G solvation = -3767.480364 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.44053 -38.68722 -38.07769 -37.20247 -35.99113 -33.73017 -31.28692 -30.50203 -29.85916 -28.70227 -27.38564 -26.85394 -26.03274 -25.28111 -22.35731 -22.08187 -21.41245 -20.40007 -18.34990 -17.56382 -17.05257 -16.85151 -16.02860 -15.92439 -15.59356 -15.16764 -14.88172 -14.68812 -14.47285 -14.28308 -14.08773 -14.01799 -12.99937 -12.81474 -12.62816 -12.46520 -12.21919 -12.09308 -11.83155 -11.68702 -11.38121 -11.27590 -11.10402 -11.03752 -10.88938 -10.68412 -10.50350 -10.11598 -10.00885 -9.47353 -9.25871 -8.43140 -8.29291 -8.05625 -7.59117 -7.25225 -6.48210 -4.59011 1.31667 1.50342 2.66524 3.03867 3.06753 3.08003 3.09872 3.22762 3.66880 3.86598 4.03415 4.44277 4.67124 4.93324 5.07646 5.13622 5.26497 5.36587 5.45304 5.52660 5.58667 5.62389 5.71026 5.76635 5.79317 5.84747 5.91863 6.05789 6.11330 6.13275 6.39547 6.52788 6.65358 6.72357 6.83518 6.88818 7.02635 7.23971 7.36572 7.53698 7.65268 7.70516 7.97487 8.06113 8.15118 8.55757 8.84964 10.06057 10.21704 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.023674 B = 0.003369 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.466711 B = 8307.974648 C = 8917.408109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.093 3.907 4 C -0.198 4.198 5 C -0.081 4.081 6 C -0.015 4.015 7 C -0.273 4.273 8 C -0.036 4.036 9 C -0.275 4.275 10 C 0.255 3.745 11 C -0.417 4.417 12 H 0.085 0.915 13 C 0.065 3.935 14 N -0.702 5.702 15 Si 0.909 3.091 16 H -0.259 1.259 17 H -0.272 1.272 18 H -0.272 1.272 19 N -0.489 5.489 20 C 0.172 3.828 21 C 0.107 3.893 22 O -0.318 6.318 23 C 0.046 3.954 24 C 0.044 3.956 25 O -0.323 6.323 26 C 0.039 3.961 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.275 0.725 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.043 0.957 39 H 0.041 0.959 40 H 0.048 0.952 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.684 -11.581 2.297 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.047 3.953 4 C -0.217 4.217 5 C -0.099 4.099 6 C -0.017 4.017 7 C -0.278 4.278 8 C -0.060 4.060 9 C -0.297 4.297 10 C 0.131 3.869 11 C -0.447 4.447 12 H 0.104 0.896 13 C -0.162 4.162 14 N -0.323 5.323 15 Si 0.732 3.268 16 H -0.183 1.183 17 H -0.197 1.197 18 H -0.197 1.197 19 N -0.201 5.201 20 C 0.003 3.997 21 C 0.062 3.938 22 O -0.234 6.234 23 C -0.048 4.048 24 C -0.001 4.001 25 O -0.240 6.240 26 C -0.055 4.055 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.136 0.864 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.648 -11.622 1.467 13.469 hybrid contribution -0.710 0.611 0.618 1.122 sum -7.358 -11.011 2.085 13.406 Atomic orbital electron populations 1.23016 0.79058 1.03462 1.01237 1.86081 1.20680 1.26536 1.89125 1.19184 0.90961 0.84631 1.00488 1.21046 0.99583 0.91806 1.09248 1.21102 0.93684 0.96726 0.98395 1.19067 0.91898 0.92652 0.98049 1.18779 1.10563 0.93968 1.04526 1.20546 0.96656 0.93078 0.95720 1.21366 1.06299 0.98173 1.03882 1.18651 0.88810 0.92452 0.86946 1.19708 1.17920 0.98631 1.08469 0.89638 1.26155 0.96611 0.98459 0.94939 1.70159 1.22674 1.32075 1.07347 0.86250 0.79430 0.81694 0.79391 1.18306 1.19684 1.19698 1.68824 1.25035 1.00819 1.25419 1.22692 0.89236 0.93790 0.93936 1.18865 0.83977 0.89919 1.00999 1.85956 1.14511 1.93592 1.29386 1.22868 0.97295 1.00116 0.84512 1.18218 0.86583 0.86032 1.09231 1.86026 1.70682 1.38148 1.29095 1.22925 0.99315 0.98313 0.84974 0.92803 0.88607 0.92854 0.85395 0.85284 0.88853 0.88352 0.91397 0.86355 0.89319 0.93484 0.93865 0.94025 0.93293 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.40 10.26 -34.16 -0.35 -4.75 16 3 C 0.09 1.47 6.70 -38.96 -0.26 1.21 16 4 C -0.20 -2.86 9.01 -39.47 -0.36 -3.22 16 5 C -0.08 -1.32 9.61 -39.18 -0.38 -1.70 16 6 C -0.01 -0.29 5.44 -104.71 -0.57 -0.86 16 7 C -0.27 -6.02 5.17 -104.47 -0.54 -6.57 16 8 C -0.04 -0.80 9.69 -39.37 -0.38 -1.18 16 9 C -0.27 -6.56 9.76 -39.16 -0.38 -6.94 16 10 C 0.25 6.82 6.55 -84.98 -0.56 6.27 16 11 C -0.42 -10.86 9.11 -37.90 -0.35 -11.21 16 12 H 0.09 2.07 7.85 -52.49 -0.41 1.66 16 13 C 0.07 1.62 5.50 -17.33 -0.10 1.52 16 14 N -0.70 -18.36 11.44 55.55 0.64 -17.72 16 15 Si 0.91 18.05 29.56 -169.99 -5.02 13.02 16 16 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 19 N -0.49 -13.38 7.83 -10.82 -0.08 -13.46 16 20 C 0.17 4.22 10.14 -17.09 -0.17 4.04 16 21 C 0.11 2.03 5.68 -38.68 -0.22 1.81 16 22 O -0.32 -6.19 9.04 -34.10 -0.31 -6.50 16 23 C 0.05 0.77 11.13 101.05 1.12 1.90 16 24 C 0.04 0.78 5.74 -39.08 -0.22 0.55 16 25 O -0.32 -5.46 9.97 -45.46 -0.45 -5.92 16 26 C 0.04 0.53 11.13 101.05 1.13 1.65 16 27 H 0.05 0.45 7.65 -51.92 -0.40 0.05 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 30 H 0.13 1.44 6.27 -52.49 -0.33 1.11 16 31 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 32 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 34 H 0.27 6.47 8.29 -40.82 -0.34 6.13 16 35 H 0.12 2.82 8.05 -52.49 -0.42 2.40 16 36 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -30.45 356.53 -6.77 -37.23 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.32 Total: 4.19 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.24 Total: -11.47 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 0.55 Total: -31.18 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -1.11 Total: -17.16 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.02 Total: 13.02 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.45 -6.77 -37.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240932726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.794 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds