Wall clock time and date at job start Tue Mar 31 2020 10:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35881 * 116.99733 * 2 1 4 4 C 1.39037 * 119.89231 * 0.02562 * 3 2 1 5 5 C 1.37724 * 120.25712 * 179.97438 * 4 3 2 6 6 C 1.39803 * 120.03231 * 0.02562 * 5 4 3 7 7 C 1.47709 * 120.11092 * 180.02562 * 6 5 4 8 8 C 1.40408 * 120.35332 * 55.47680 * 7 6 5 9 9 C 1.36574 * 118.60202 * 179.74870 * 8 7 6 10 10 C 1.40945 * 119.26743 * 0.52273 * 9 8 7 11 11 C 1.40882 * 119.66733 * 179.71741 * 10 9 8 12 12 H 1.07997 * 120.00070 * 0.02562 * 11 10 9 13 13 C 1.40050 * 119.99810 * 180.02562 * 11 10 9 14 14 N 1.30753 * 119.99897 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99926 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47298 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47223 * 119.99441 * 15 13 11 18 18 H 1.48501 * 109.46984 * 239.99809 * 15 13 11 19 19 N 1.33812 * 120.66087 * 359.73889 * 10 9 8 20 20 C 1.31162 * 121.51125 * 359.97438 * 19 10 9 21 21 C 1.40184 * 119.77818 * 0.02562 * 6 5 4 22 22 O 1.35879 * 120.12421 * 180.02562 * 21 6 5 23 23 C 1.42900 * 116.99707 * 93.60436 * 22 21 6 24 24 C 1.38712 * 119.74888 * 359.72869 * 21 6 5 25 25 O 1.36096 * 120.01987 * 180.29839 * 24 21 6 26 26 C 1.42898 * 116.99924 * 270.20674 * 25 24 21 27 27 H 1.09010 * 109.47423 * 300.00001 * 1 2 3 28 28 H 1.08998 * 109.47358 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47657 * 59.99669 * 1 2 3 30 30 H 1.07997 * 119.87316 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.98661 * 180.02562 * 5 4 3 32 32 H 1.07998 * 120.70301 * 359.97438 * 8 7 6 33 33 H 1.08001 * 120.36623 * 180.26137 * 9 8 7 34 34 H 0.96999 * 120.00016 * 180.02562 * 14 13 11 35 35 H 1.08000 * 119.66415 * 180.02562 * 20 19 10 36 36 H 1.09013 * 109.46635 * 184.88109 * 23 22 21 37 37 H 1.08994 * 109.47392 * 304.87710 * 23 22 21 38 38 H 1.08995 * 109.47264 * 64.88397 * 23 22 21 39 39 H 1.08997 * 109.47216 * 300.00033 * 26 25 24 40 40 H 1.08998 * 109.47004 * 60.00070 * 26 25 24 41 41 H 1.09003 * 109.47369 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2863 2.3753 0.0005 5 6 1.9037 3.6065 0.0011 6 6 3.2993 3.6894 0.0005 7 6 3.9632 5.0088 0.0017 8 6 3.6692 5.9502 1.0011 9 6 4.3078 7.1571 0.9707 10 6 5.2284 7.4237 -0.0626 11 6 5.8875 8.6681 -0.1055 12 1 5.6865 9.4119 0.6513 13 6 6.8032 8.9406 -1.1295 14 7 7.0468 8.0398 -2.0454 15 14 7.6776 10.5903 -1.1860 16 1 7.2301 11.4271 -0.0437 17 1 9.1445 10.3763 -1.0986 18 1 7.3528 11.2793 -2.4607 19 7 5.4824 6.5068 -1.0036 20 6 4.8897 5.3368 -0.9985 21 6 4.0664 2.5161 -0.0011 22 8 5.4233 2.5884 -0.0011 23 6 6.0754 2.5414 1.2696 24 6 3.4351 1.2809 0.0035 25 8 4.1745 0.1384 0.0081 26 6 4.5311 -0.4087 -1.2629 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 0.2081 2.3144 0.0005 31 1 1.3095 4.5083 0.0019 32 1 2.9558 5.7234 1.7796 33 1 4.1063 7.9005 1.7278 34 1 7.6813 8.2284 -2.7544 35 1 5.1174 4.6189 -1.7725 36 1 7.1461 2.6950 1.1343 37 1 5.6745 3.3245 1.9130 38 1 5.9033 1.5688 1.7305 39 1 3.6266 -0.6474 -1.8224 40 1 5.1209 0.3196 -1.8194 41 1 5.1181 -1.3154 -1.1165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240932726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:19 Heat of formation + Delta-G solvation = -64.368718 kcal Electronic energy + Delta-G solvation = -26056.825391 eV Core-core repulsion = 22288.592818 eV Total energy + Delta-G solvation = -3768.232573 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.71575 -40.14958 -39.59052 -38.53829 -37.32171 -35.52551 -32.95053 -32.33539 -31.10991 -30.19329 -28.46191 -28.10107 -27.24710 -26.91691 -23.92407 -23.72992 -22.89649 -21.97244 -19.55557 -19.41250 -18.33346 -18.14985 -17.45946 -17.25514 -17.05333 -16.36133 -16.31091 -16.01987 -15.85079 -15.83040 -15.53772 -15.40163 -14.49606 -14.27806 -14.02958 -13.95017 -13.66049 -13.50119 -13.20204 -12.87638 -12.79667 -12.72138 -12.65913 -12.58658 -12.20992 -12.10764 -11.89143 -11.71522 -11.40344 -11.20695 -10.62857 -10.18727 -9.75334 -9.59565 -9.47554 -8.81599 -8.30538 -6.50350 0.02954 0.14194 0.92410 1.22328 1.40837 1.52407 1.56710 2.14059 2.21415 2.40111 2.80074 2.85228 3.11775 3.88427 3.91997 4.05928 4.11145 4.22891 4.34312 4.37030 4.40350 4.41068 4.44122 4.46862 4.48711 4.50851 4.54581 4.70690 4.75798 4.78063 4.87781 4.96370 5.11142 5.16108 5.23047 5.38548 5.46517 5.56109 5.72050 5.91435 6.11438 6.13371 6.27497 6.41462 6.70456 6.74249 6.94427 8.18727 8.41363 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.023674 B = 0.003369 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.466711 B = 8307.974648 C = 8917.408109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.104 3.896 4 C -0.185 4.185 5 C -0.073 4.073 6 C -0.051 4.051 7 C -0.247 4.247 8 C -0.037 4.037 9 C -0.285 4.285 10 C 0.223 3.777 11 C -0.456 4.456 12 H 0.093 0.907 13 C 0.021 3.979 14 N -0.749 5.749 15 Si 0.989 3.011 16 H -0.251 1.251 17 H -0.267 1.267 18 H -0.266 1.266 19 N -0.523 5.523 20 C 0.147 3.853 21 C 0.097 3.903 22 O -0.341 6.341 23 C 0.047 3.953 24 C 0.028 3.972 25 O -0.337 6.337 26 C 0.037 3.963 27 H 0.068 0.932 28 H 0.120 0.880 29 H 0.067 0.933 30 H 0.169 0.831 31 H 0.144 0.856 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.280 0.720 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.034 0.966 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.036 0.964 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.874 -12.677 3.097 16.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.058 3.942 4 C -0.203 4.203 5 C -0.091 4.091 6 C -0.052 4.052 7 C -0.252 4.252 8 C -0.060 4.060 9 C -0.307 4.307 10 C 0.099 3.901 11 C -0.486 4.486 12 H 0.111 0.889 13 C -0.201 4.201 14 N -0.371 5.371 15 Si 0.809 3.191 16 H -0.174 1.174 17 H -0.192 1.192 18 H -0.191 1.191 19 N -0.236 5.236 20 C -0.019 4.019 21 C 0.052 3.948 22 O -0.258 6.258 23 C -0.047 4.047 24 C -0.017 4.017 25 O -0.254 6.254 26 C -0.057 4.057 27 H 0.086 0.914 28 H 0.139 0.861 29 H 0.086 0.914 30 H 0.186 0.814 31 H 0.162 0.838 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.870 -12.763 2.270 15.708 hybrid contribution -0.243 0.598 0.404 0.762 sum -9.113 -12.165 2.674 15.433 Atomic orbital electron populations 1.23425 0.76211 1.05734 1.02562 1.86084 1.23549 1.25598 1.88520 1.19283 0.90533 0.85859 0.98531 1.21363 1.01428 0.90271 1.07267 1.21245 0.92344 0.98321 0.97221 1.19015 0.93318 0.91207 1.01677 1.18961 1.08403 0.95164 1.02678 1.20884 0.96741 0.92226 0.96171 1.21566 1.06036 0.99471 1.03624 1.19084 0.90139 0.92995 0.87919 1.20043 1.19603 0.99089 1.09895 0.88888 1.27089 0.96796 1.02333 0.93931 1.70266 1.23936 1.34495 1.08389 0.85055 0.77931 0.76491 0.79612 1.17419 1.19171 1.19086 1.68726 1.26439 1.01837 1.26564 1.22758 0.90686 0.93356 0.95070 1.19014 0.83636 0.90612 1.01508 1.85912 1.15367 1.93799 1.30688 1.22939 0.97670 1.00415 0.83628 1.18308 0.87674 0.85749 1.09967 1.85990 1.70870 1.37801 1.30735 1.23093 0.99863 0.98832 0.83917 0.91388 0.86144 0.91436 0.81389 0.83827 0.85529 0.86884 0.90944 0.86974 0.88278 0.94738 0.92416 0.93267 0.94472 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.32 16 2 O -0.32 -8.05 10.26 -78.06 -0.80 -8.85 16 3 C 0.10 3.00 6.70 22.67 0.15 3.16 16 4 C -0.18 -4.65 9.01 22.34 0.20 -4.45 16 5 C -0.07 -2.22 9.61 22.53 0.22 -2.00 16 6 C -0.05 -1.92 5.44 -19.92 -0.11 -2.02 16 7 C -0.25 -11.01 5.17 -19.76 -0.10 -11.11 16 8 C -0.04 -1.59 9.69 22.41 0.22 -1.37 16 9 C -0.28 -13.79 9.76 22.54 0.22 -13.57 16 10 C 0.22 12.40 6.55 40.15 0.26 12.66 16 11 C -0.46 -24.60 9.11 23.36 0.21 -24.39 16 12 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 13 C 0.02 1.07 5.50 85.29 0.47 1.54 16 14 N -0.75 -40.98 11.44 21.84 0.25 -40.73 16 15 Si 0.99 37.82 29.56 68.60 2.03 39.85 16 16 H -0.25 -9.11 7.11 99.48 0.71 -8.41 16 17 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 18 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 19 N -0.52 -30.04 7.83 -188.15 -1.47 -31.51 16 20 C 0.15 7.56 10.14 85.28 0.86 8.43 16 21 C 0.10 3.65 5.68 22.86 0.13 3.78 16 22 O -0.34 -13.57 9.04 -78.09 -0.71 -14.28 16 23 C 0.05 1.60 11.13 113.37 1.26 2.86 16 24 C 0.03 0.94 5.74 22.59 0.13 1.07 16 25 O -0.34 -11.02 9.97 -70.33 -0.70 -11.73 16 26 C 0.04 0.95 11.13 113.37 1.26 2.21 16 27 H 0.07 0.79 7.65 -2.38 -0.02 0.77 16 28 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 0.78 7.65 -2.39 -0.02 0.76 16 30 H 0.17 2.85 6.27 -2.91 -0.02 2.83 16 31 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 33 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 34 H 0.28 13.78 8.29 -92.71 -0.77 13.01 16 35 H 0.11 5.71 8.05 -2.91 -0.02 5.69 16 36 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 37 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -69.41 356.53 6.14 -63.27 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 1.04 Total: 25.85 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 6.50 Total: -21.87 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -1.22 Total: -72.24 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -2.21 Total: -34.85 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Total: -69.41 6.14 -63.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240932726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.104 kcal (2) G-P(sol) polarization free energy of solvation -69.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds