Wall clock time and date at job start Tue Mar 31 2020 10:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35593 * 117.00246 * 2 1 4 4 C 1.39072 * 119.48928 * 180.02562 * 3 2 1 5 5 C 1.38118 * 119.40214 * 179.74066 * 4 3 2 6 6 C 1.40044 * 118.41450 * 0.49841 * 5 4 3 7 7 C 1.47807 * 120.52333 * 179.75194 * 6 5 4 8 8 C 1.40180 * 119.84496 * 129.75122 * 7 6 5 9 9 C 1.36068 * 120.37863 * 180.02562 * 8 7 6 10 10 C 1.40941 * 120.06461 * 359.73791 * 9 8 7 11 11 C 1.40799 * 120.15026 * 180.28294 * 10 9 8 12 12 H 1.08005 * 119.99693 * 205.09240 * 11 10 9 13 13 C 1.39928 * 120.00112 * 25.08553 * 11 10 9 14 14 N 1.30875 * 120.00075 * 17.73303 * 13 11 10 15 15 Si 1.86802 * 119.99944 * 197.73054 * 13 11 10 16 16 H 1.48503 * 109.47262 * 90.00096 * 15 13 11 17 17 H 1.48500 * 109.47498 * 210.00156 * 15 13 11 18 18 H 1.48501 * 109.47399 * 330.00281 * 15 13 11 19 19 C 1.41528 * 119.69881 * 0.48757 * 10 9 8 20 20 O 1.35685 * 120.18841 * 179.79320 * 19 10 9 21 21 C 1.42901 * 117.00057 * 179.72448 * 20 19 10 22 22 C 1.37884 * 119.62504 * 359.52000 * 19 10 9 23 23 C 1.40218 * 118.94796 * 359.48665 * 6 5 4 24 24 O 1.35540 * 119.76005 * 180.25327 * 23 6 5 25 25 C 1.42896 * 117.00368 * 180.02562 * 24 23 6 26 26 N 1.32186 * 120.48644 * 0.26985 * 23 6 5 27 27 H 1.09008 * 109.47030 * 60.00345 * 1 2 3 28 28 H 1.08999 * 109.47480 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47481 * 300.00587 * 1 2 3 30 30 H 1.08002 * 120.29862 * 0.02562 * 4 3 2 31 31 H 1.07994 * 120.79199 * 180.27583 * 5 4 3 32 32 H 1.07994 * 119.81371 * 359.97322 * 8 7 6 33 33 H 1.07998 * 119.97003 * 180.02562 * 9 8 7 34 34 H 0.97002 * 120.00125 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.47032 * 179.97438 * 21 20 19 36 36 H 1.09004 * 109.47142 * 60.00219 * 21 20 19 37 37 H 1.08998 * 109.47231 * 299.99692 * 21 20 19 38 38 H 1.07999 * 120.03969 * 180.27247 * 22 19 10 39 39 H 1.08996 * 109.47377 * 180.02562 * 25 24 23 40 40 H 1.09011 * 109.46729 * 299.99490 * 25 24 23 41 41 H 1.08997 * 109.47541 * 59.99020 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 3.4340 1.2685 -0.0005 5 6 4.0592 2.5000 -0.0060 6 6 3.2626 3.6518 -0.0001 7 6 3.8828 4.9935 0.0000 8 6 3.4656 5.9549 -0.9310 9 6 4.0294 7.1932 -0.9410 10 6 5.0352 7.5186 -0.0088 11 6 5.6157 8.8013 -0.0137 12 1 6.6114 8.9450 0.3795 13 6 4.9028 9.8900 -0.5280 14 7 3.6054 9.8095 -0.6805 15 14 5.8028 11.4583 -0.9970 16 1 6.2244 11.3808 -2.4188 17 1 4.8992 12.6220 -0.8114 18 1 7.0004 11.6189 -0.1337 19 6 5.4621 6.5487 0.9293 20 8 6.4326 6.8499 1.8285 21 6 6.8069 5.8220 2.7479 22 6 4.8822 5.2977 0.9282 23 6 1.8674 3.5121 0.0001 24 8 1.0807 4.6158 0.0005 25 6 -0.3327 4.4051 0.0013 26 7 1.3136 2.3118 0.0001 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 4.0188 0.3605 -0.0014 31 1 5.1367 2.5730 -0.0110 32 1 2.6929 5.7111 -1.6450 33 1 3.7027 7.9290 -1.6609 34 1 3.1113 10.5640 -1.0374 35 1 7.5901 6.1933 3.4088 36 1 7.1770 4.9580 2.1960 37 1 5.9393 5.5307 3.3400 38 1 5.1997 4.5540 1.6439 39 1 -0.8435 5.3680 0.0011 40 1 -0.6167 3.8434 -0.8888 41 1 -0.6159 3.8432 0.8912 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241575082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:42 Heat of formation + Delta-G solvation = -71.794801 kcal Electronic energy + Delta-G solvation = -25875.141805 eV Core-core repulsion = 22106.587213 eV Total energy + Delta-G solvation = -3768.554592 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.86376 -40.37921 -39.81491 -38.21041 -37.64206 -35.70293 -33.55870 -32.28635 -30.62905 -30.47723 -28.73235 -28.03095 -27.71804 -26.43703 -24.13554 -23.87657 -22.30078 -22.06092 -19.84986 -19.30801 -18.80597 -18.31284 -17.38408 -17.14226 -16.83140 -16.48344 -16.34747 -16.16584 -16.04725 -15.82712 -15.59255 -14.66369 -14.59067 -14.37253 -14.25845 -14.05742 -13.85390 -13.44480 -13.07825 -12.86589 -12.82344 -12.72191 -12.57859 -12.49988 -12.37103 -12.08916 -11.80148 -11.58579 -11.45673 -11.35817 -11.07289 -10.84765 -10.69505 -9.50960 -8.94838 -8.73173 -8.52225 -6.15916 0.07097 0.29990 1.00022 1.19176 1.39978 1.53187 1.53722 2.04371 2.23873 2.25208 2.65183 2.83644 2.96614 3.29287 3.69740 3.93416 4.16039 4.26931 4.34916 4.38466 4.39998 4.43022 4.48033 4.48466 4.52774 4.53677 4.65725 4.69239 4.75534 4.78221 4.84978 5.11915 5.17828 5.25067 5.41587 5.46032 5.50816 5.86455 5.91703 5.91998 6.20046 6.31108 6.46112 6.54473 6.75383 6.81209 6.92322 7.26818 8.35184 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018832 B = 0.003678 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.440798 B = 7610.974405 C = 8665.147644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.311 6.311 3 C 0.328 3.672 4 C -0.213 4.213 5 C -0.012 4.012 6 C -0.126 4.126 7 C -0.135 4.135 8 C -0.092 4.092 9 C -0.168 4.168 10 C 0.069 3.931 11 C -0.476 4.476 12 H 0.072 0.928 13 C 0.033 3.967 14 N -0.821 5.821 15 Si 0.982 3.018 16 H -0.260 1.260 17 H -0.267 1.267 18 H -0.261 1.261 19 C -0.003 4.003 20 O -0.339 6.339 21 C 0.026 3.974 22 C -0.154 4.154 23 C 0.340 3.660 24 O -0.312 6.312 25 C 0.037 3.963 26 N -0.594 5.594 27 H 0.052 0.948 28 H 0.126 0.874 29 H 0.052 0.948 30 H 0.170 0.830 31 H 0.164 0.836 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.288 0.712 35 H 0.111 0.889 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.060 0.940 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 -14.355 1.551 14.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.218 6.218 3 C 0.150 3.850 4 C -0.234 4.234 5 C -0.036 4.036 6 C -0.129 4.129 7 C -0.137 4.137 8 C -0.111 4.111 9 C -0.188 4.188 10 C 0.066 3.934 11 C -0.505 4.505 12 H 0.090 0.910 13 C -0.181 4.181 14 N -0.447 5.447 15 Si 0.802 3.198 16 H -0.185 1.185 17 H -0.192 1.192 18 H -0.185 1.185 19 C -0.047 4.047 20 O -0.255 6.255 21 C -0.069 4.069 22 C -0.173 4.173 23 C 0.162 3.838 24 O -0.218 6.218 25 C -0.057 4.057 26 N -0.334 5.334 27 H 0.071 0.929 28 H 0.145 0.855 29 H 0.071 0.929 30 H 0.188 0.812 31 H 0.181 0.819 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.144 0.856 39 H 0.128 0.872 40 H 0.079 0.921 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.936 -14.095 1.519 15.011 hybrid contribution 0.255 0.782 -0.112 0.831 sum -4.681 -13.312 1.407 14.181 Atomic orbital electron populations 1.23034 0.76117 1.04669 1.01943 1.86212 1.24143 1.23643 1.87844 1.19721 0.89751 0.83445 0.92095 1.21069 0.91191 0.99918 1.11188 1.21591 1.01020 0.89080 0.91916 1.18835 0.89674 0.94744 1.09615 1.17674 1.01933 0.92657 1.01420 1.20412 0.98780 0.93292 0.98618 1.20646 1.01547 0.95943 1.00668 1.17452 0.93175 0.92674 0.90063 1.19562 1.02079 0.92782 1.36058 0.90953 1.26744 0.95100 1.03759 0.92540 1.69905 1.08261 1.33664 1.32853 0.85210 0.78966 0.75971 0.79607 1.18499 1.19155 1.18502 1.19162 0.95884 0.95363 0.94280 1.85919 1.53514 1.41095 1.44928 1.23076 1.00377 0.91473 0.91954 1.20822 0.99905 0.95247 1.01348 1.19657 0.88476 0.83748 0.91896 1.86415 1.20390 1.27824 1.87207 1.23008 0.76784 1.03759 1.02191 1.66670 1.41688 0.98283 1.26710 0.92896 0.85548 0.92874 0.81221 0.81855 0.88863 0.87598 0.90097 0.87105 0.92520 0.93591 0.85649 0.87218 0.92111 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.37 113.37 1.18 1.84 16 2 O -0.31 -7.58 10.47 -89.03 -0.93 -8.51 16 3 C 0.33 9.40 7.49 84.81 0.64 10.03 16 4 C -0.21 -5.52 10.02 22.44 0.22 -5.30 16 5 C -0.01 -0.34 9.66 22.68 0.22 -0.13 16 6 C -0.13 -4.70 5.49 -19.83 -0.11 -4.81 16 7 C -0.13 -5.98 5.31 -19.91 -0.11 -6.08 16 8 C -0.09 -4.51 8.70 22.24 0.19 -4.32 16 9 C -0.17 -9.12 8.61 22.43 0.19 -8.93 16 10 C 0.07 3.85 5.58 -21.18 -0.12 3.73 16 11 C -0.48 -26.66 8.69 23.31 0.20 -26.46 16 12 H 0.07 4.05 7.64 -2.91 -0.02 4.03 16 13 C 0.03 1.73 5.13 85.24 0.44 2.16 16 14 N -0.82 -43.78 10.97 21.83 0.24 -43.54 16 15 Si 0.98 39.32 29.60 68.60 2.03 41.35 16 16 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 17 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 19 C 0.00 -0.13 6.71 23.00 0.15 0.03 16 20 O -0.34 -15.75 9.77 -90.04 -0.88 -16.63 16 21 C 0.03 0.84 9.81 113.37 1.11 1.96 16 22 C -0.15 -6.81 8.51 22.55 0.19 -6.62 16 23 C 0.34 12.49 7.41 85.12 0.63 13.12 16 24 O -0.31 -11.82 8.82 -88.44 -0.78 -12.60 16 25 C 0.04 1.02 10.38 113.37 1.18 2.20 16 26 N -0.59 -19.01 8.03 -420.97 -3.38 -22.40 16 27 H 0.05 1.00 8.10 -2.38 -0.02 0.98 16 28 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 30 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 31 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 32 H 0.09 4.35 7.67 -2.91 -0.02 4.33 16 33 H 0.11 5.97 6.17 -2.91 -0.02 5.95 16 34 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 35 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.06 1.62 7.66 -2.38 -0.02 1.60 16 37 H 0.05 1.41 7.66 -2.39 -0.02 1.39 16 38 H 0.13 4.68 6.28 -2.91 -0.02 4.66 16 39 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.06 1.53 8.11 -2.38 -0.02 1.51 16 41 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 Total: -1.00 -67.69 351.18 3.56 -64.12 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 1.05 Total: 25.76 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 6.22 Total: -27.56 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -3.14 Total: -65.94 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -2.59 Total: -37.74 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -67.69 3.56 -64.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241575082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.672 kcal (2) G-P(sol) polarization free energy of solvation -67.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds