Wall clock time and date at job start Tue Mar 31 2020 10:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35653 * 116.99880 * 2 1 4 4 C 1.38913 * 119.51292 * 180.02562 * 3 2 1 5 5 C 1.38288 * 119.36321 * 179.74784 * 4 3 2 6 6 C 1.39723 * 118.43522 * 0.49383 * 5 4 3 7 7 C 1.48263 * 120.50303 * 179.75496 * 6 5 4 8 8 C 1.38614 * 120.09764 * 64.72256 * 7 6 5 9 9 C 1.40606 * 119.56979 * 179.97438 * 8 7 6 10 10 C 1.41238 * 120.11624 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00215 * 154.85862 * 10 9 8 12 12 C 1.39851 * 120.00129 * 334.86400 * 10 9 8 13 13 N 1.30895 * 120.00263 * 342.55820 * 12 10 9 14 14 Si 1.86802 * 119.99834 * 162.55759 * 12 10 9 15 15 H 1.48492 * 109.47051 * 90.00124 * 14 12 10 16 16 H 1.48502 * 109.47011 * 210.00216 * 14 12 10 17 17 H 1.48501 * 109.47436 * 329.99570 * 14 12 10 18 18 C 1.40916 * 119.76595 * 0.02562 * 9 8 7 19 19 C 1.36437 * 120.19372 * 0.02562 * 18 9 8 20 20 C 1.39117 * 120.43853 * 359.97384 * 19 18 9 21 21 O 1.35624 * 119.88246 * 180.02562 * 20 19 18 22 22 C 1.42900 * 117.00181 * 359.97438 * 21 20 19 23 23 C 1.39891 * 118.99749 * 359.48634 * 6 5 4 24 24 O 1.35614 * 119.74104 * 180.24997 * 23 6 5 25 25 C 1.42890 * 117.00483 * 180.02562 * 24 23 6 26 26 N 1.32215 * 120.52770 * 0.27264 * 23 6 5 27 27 H 1.08997 * 109.47296 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47646 * 300.00261 * 1 2 3 29 29 H 1.09009 * 109.46935 * 60.00115 * 1 2 3 30 30 H 1.08002 * 120.31508 * 359.97438 * 4 3 2 31 31 H 1.08005 * 120.77992 * 180.27965 * 5 4 3 32 32 H 1.07999 * 120.20922 * 0.26105 * 8 7 6 33 33 H 0.97000 * 120.00525 * 179.97438 * 13 12 10 34 34 H 1.08005 * 119.90370 * 180.02562 * 18 9 8 35 35 H 1.07998 * 119.78210 * 180.02562 * 19 18 9 36 36 H 1.08998 * 109.46819 * 300.00423 * 22 21 20 37 37 H 1.08998 * 109.46804 * 60.00097 * 22 21 20 38 38 H 1.08997 * 109.47061 * 180.02562 * 22 21 20 39 39 H 1.09000 * 109.47515 * 300.00113 * 25 24 23 40 40 H 1.09005 * 109.47234 * 60.00271 * 25 24 23 41 41 H 1.09001 * 109.47288 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4326 1.2696 -0.0005 5 6 4.0572 2.5034 -0.0058 6 6 3.2615 3.6519 0.0001 7 6 3.8830 4.9980 0.0002 8 6 4.6345 5.4168 -1.0866 9 6 5.2185 6.6958 -1.0749 10 6 5.9870 7.1340 -2.1759 11 1 6.0932 8.1904 -2.3741 12 6 6.6103 6.2001 -3.0096 13 7 6.7777 4.9677 -2.6018 14 14 7.2040 6.7116 -4.7053 15 1 8.6051 7.1949 -4.6143 16 1 7.1409 5.5466 -5.6241 17 1 6.3378 7.7997 -5.2258 18 6 5.0352 7.5384 0.0396 19 6 4.2944 7.1161 1.1047 20 6 3.7129 5.8522 1.1019 21 8 2.9784 5.4441 2.1664 22 6 2.8450 6.3625 3.2531 23 6 1.8696 3.5126 0.0002 24 8 1.0829 4.6173 0.0007 25 6 -0.3305 4.4072 0.0013 26 7 1.3147 2.3125 0.0001 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 4.0181 0.3621 -0.0005 31 1 5.1347 2.5775 -0.0109 32 1 4.7668 4.7666 -1.9387 33 1 7.2098 4.3198 -3.1801 34 1 5.4824 8.5215 0.0507 35 1 4.1579 7.7675 1.9552 36 1 3.8315 6.5996 3.6515 37 1 2.3665 7.2760 2.9001 38 1 2.2357 5.9121 4.0366 39 1 -0.6149 3.8457 -0.8886 40 1 -0.6140 3.8454 0.8914 41 1 -0.8410 5.3703 0.0022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241575159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:36 Heat of formation + Delta-G solvation = -50.602058 kcal Electronic energy + Delta-G solvation = -26437.688036 eV Core-core repulsion = 22670.052429 eV Total energy + Delta-G solvation = -3767.635606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.49748 -38.83952 -38.35936 -36.76128 -36.20254 -33.41637 -32.36840 -30.95398 -29.07617 -28.50429 -27.57919 -26.84317 -26.07656 -24.59340 -22.98569 -22.48674 -20.67135 -20.20114 -18.53545 -17.54092 -17.32124 -16.80351 -16.03899 -15.61556 -15.32815 -15.20986 -15.03266 -14.77100 -14.68045 -14.40319 -13.42313 -13.32982 -13.06746 -12.96465 -12.94016 -12.52683 -12.02591 -11.97404 -11.80242 -11.56183 -11.33310 -11.30155 -11.22982 -11.02009 -10.77088 -10.63594 -10.33626 -9.99417 -9.91191 -9.67048 -9.33300 -9.26814 -8.99184 -7.84822 -7.30626 -6.95521 -6.67438 -4.23158 1.61953 1.72836 2.76494 2.89017 3.10586 3.13933 3.22308 3.26326 3.52934 3.97720 4.18267 4.38267 4.60190 4.61870 5.25895 5.33194 5.35963 5.45323 5.47311 5.51742 5.59581 5.66549 5.67922 5.71752 5.75874 5.81159 5.89774 5.90615 6.14019 6.27883 6.49925 6.70729 6.86019 6.98070 7.11043 7.17460 7.20092 7.41635 7.48462 7.75387 7.80767 7.98478 8.13577 8.20127 8.47734 8.65128 8.91768 8.97995 10.25083 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.012230 B = 0.004926 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.849950 B = 5682.967779 C = 7052.506611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.311 6.311 3 C 0.337 3.663 4 C -0.227 4.227 5 C -0.002 4.002 6 C -0.101 4.101 7 C -0.051 4.051 8 C -0.111 4.111 9 C 0.086 3.914 10 C -0.464 4.464 11 H 0.076 0.924 12 C 0.077 3.923 13 N -0.801 5.801 14 Si 0.904 3.096 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.262 1.262 18 C -0.186 4.186 19 C -0.173 4.173 20 C 0.027 3.973 21 O -0.322 6.322 22 C 0.039 3.961 23 C 0.369 3.631 24 O -0.281 6.281 25 C 0.042 3.958 26 N -0.599 5.599 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.138 0.862 31 H 0.150 0.850 32 H 0.127 0.873 33 H 0.279 0.721 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.397 -5.554 4.873 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.218 6.218 3 C 0.160 3.840 4 C -0.248 4.248 5 C -0.026 4.026 6 C -0.104 4.104 7 C -0.053 4.053 8 C -0.130 4.130 9 C 0.083 3.917 10 C -0.494 4.494 11 H 0.094 0.906 12 C -0.140 4.140 13 N -0.428 5.428 14 Si 0.728 3.272 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.186 1.186 18 C -0.206 4.206 19 C -0.191 4.191 20 C -0.017 4.017 21 O -0.237 6.237 22 C -0.057 4.057 23 C 0.191 3.809 24 O -0.186 6.186 25 C -0.054 4.054 26 N -0.338 5.338 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.156 0.844 31 H 0.168 0.832 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.134 -6.002 4.819 12.726 hybrid contribution 0.738 0.497 -0.619 1.083 sum -9.397 -5.505 4.200 11.672 Atomic orbital electron populations 1.22744 0.78055 1.02281 1.02146 1.86215 1.22282 1.24943 1.88390 1.19288 0.88983 0.83098 0.92646 1.20753 0.91273 0.99351 1.13440 1.21423 1.00714 0.89392 0.91091 1.18646 0.89189 0.95154 1.07447 1.17453 1.02646 0.90839 0.94333 1.21271 0.97160 0.98121 0.96495 1.17456 0.91181 0.91346 0.91676 1.19396 1.27092 0.94233 1.08727 0.90605 1.25808 0.94239 0.94504 0.99426 1.69808 1.32729 1.04113 1.36138 0.86387 0.79534 0.79314 0.81926 1.19632 1.20185 1.18603 1.20628 1.05037 1.00591 0.94299 1.20328 1.03800 0.95194 0.99812 1.18492 1.00555 0.94041 0.88633 1.85874 1.69480 1.42189 1.26173 1.22684 1.00342 0.93755 0.88917 1.19404 0.88218 0.83146 0.90084 1.86429 1.18104 1.27055 1.87014 1.22751 0.79003 1.02164 1.01487 1.66631 1.41529 0.98505 1.27129 0.89122 0.92681 0.92664 0.84421 0.83190 0.85484 0.90992 0.88686 0.88527 0.94040 0.93987 0.90332 0.92997 0.92968 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.37 101.05 1.05 1.54 16 2 O -0.31 -4.67 10.47 -18.66 -0.20 -4.86 16 3 C 0.34 5.81 7.49 -17.08 -0.13 5.68 16 4 C -0.23 -3.82 10.02 -39.31 -0.39 -4.22 16 5 C 0.00 -0.03 9.87 -39.01 -0.39 -0.42 16 6 C -0.10 -2.16 4.95 -104.60 -0.52 -2.68 16 7 C -0.05 -1.21 4.97 -104.81 -0.52 -1.73 16 8 C -0.11 -2.83 8.35 -38.55 -0.32 -3.15 16 9 C 0.09 2.24 5.57 -106.85 -0.59 1.64 16 10 C -0.46 -12.12 9.03 -37.84 -0.34 -12.46 16 11 H 0.08 1.91 7.90 -52.48 -0.41 1.49 16 12 C 0.08 1.90 5.14 -17.35 -0.09 1.81 16 13 N -0.80 -20.23 10.97 55.54 0.61 -19.62 16 14 Si 0.90 18.61 29.59 -169.99 -5.03 13.58 16 15 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 16 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 18 C -0.19 -4.47 9.72 -39.22 -0.38 -4.86 16 19 C -0.17 -3.85 8.95 -39.90 -0.36 -4.21 16 20 C 0.03 0.61 6.42 -38.43 -0.25 0.36 16 21 O -0.32 -6.69 9.48 -18.57 -0.18 -6.87 16 22 C 0.04 0.62 9.80 101.05 0.99 1.61 16 23 C 0.37 7.42 7.20 -16.77 -0.12 7.30 16 24 O -0.28 -5.48 9.48 -18.54 -0.18 -5.66 16 25 C 0.04 0.60 10.38 101.05 1.05 1.65 16 26 N -0.60 -10.86 8.04 -13.13 -0.11 -10.97 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.05 0.63 8.10 -51.92 -0.42 0.21 16 30 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 31 H 0.15 2.72 8.06 -52.48 -0.42 2.30 16 32 H 0.13 3.36 6.20 -52.49 -0.33 3.04 16 33 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 34 H 0.09 2.14 8.06 -52.48 -0.42 1.71 16 35 H 0.10 1.88 6.25 -52.49 -0.33 1.55 16 36 H 0.04 0.62 7.65 -51.93 -0.40 0.23 16 37 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -29.47 352.57 -6.29 -35.76 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.22 Total: 5.46 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -1.31 Total: -12.13 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 0.50 Total: -30.59 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.55 Total: -17.39 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.47 -6.29 -35.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241575159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.842 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds