Wall clock time and date at job start Tue Mar 31 2020 10:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35653 * 116.99880 * 2 1 4 4 C 1.38913 * 119.51292 * 180.02562 * 3 2 1 5 5 C 1.38288 * 119.36321 * 179.74784 * 4 3 2 6 6 C 1.39723 * 118.43522 * 0.49383 * 5 4 3 7 7 C 1.48263 * 120.50303 * 179.75496 * 6 5 4 8 8 C 1.38614 * 120.09764 * 64.72256 * 7 6 5 9 9 C 1.40606 * 119.56979 * 179.97438 * 8 7 6 10 10 C 1.41238 * 120.11624 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00215 * 154.85862 * 10 9 8 12 12 C 1.39851 * 120.00129 * 334.86400 * 10 9 8 13 13 N 1.30895 * 120.00263 * 342.55820 * 12 10 9 14 14 Si 1.86802 * 119.99834 * 162.55759 * 12 10 9 15 15 H 1.48492 * 109.47051 * 90.00124 * 14 12 10 16 16 H 1.48502 * 109.47011 * 210.00216 * 14 12 10 17 17 H 1.48501 * 109.47436 * 329.99570 * 14 12 10 18 18 C 1.40916 * 119.76595 * 0.02562 * 9 8 7 19 19 C 1.36437 * 120.19372 * 0.02562 * 18 9 8 20 20 C 1.39117 * 120.43853 * 359.97384 * 19 18 9 21 21 O 1.35624 * 119.88246 * 180.02562 * 20 19 18 22 22 C 1.42900 * 117.00181 * 359.97438 * 21 20 19 23 23 C 1.39891 * 118.99749 * 359.48634 * 6 5 4 24 24 O 1.35614 * 119.74104 * 180.24997 * 23 6 5 25 25 C 1.42890 * 117.00483 * 180.02562 * 24 23 6 26 26 N 1.32215 * 120.52770 * 0.27264 * 23 6 5 27 27 H 1.08997 * 109.47296 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47646 * 300.00261 * 1 2 3 29 29 H 1.09009 * 109.46935 * 60.00115 * 1 2 3 30 30 H 1.08002 * 120.31508 * 359.97438 * 4 3 2 31 31 H 1.08005 * 120.77992 * 180.27965 * 5 4 3 32 32 H 1.07999 * 120.20922 * 0.26105 * 8 7 6 33 33 H 0.97000 * 120.00525 * 179.97438 * 13 12 10 34 34 H 1.08005 * 119.90370 * 180.02562 * 18 9 8 35 35 H 1.07998 * 119.78210 * 180.02562 * 19 18 9 36 36 H 1.08998 * 109.46819 * 300.00423 * 22 21 20 37 37 H 1.08998 * 109.46804 * 60.00097 * 22 21 20 38 38 H 1.08997 * 109.47061 * 180.02562 * 22 21 20 39 39 H 1.09000 * 109.47515 * 300.00113 * 25 24 23 40 40 H 1.09005 * 109.47234 * 60.00271 * 25 24 23 41 41 H 1.09001 * 109.47288 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4326 1.2696 -0.0005 5 6 4.0572 2.5034 -0.0058 6 6 3.2615 3.6519 0.0001 7 6 3.8830 4.9980 0.0002 8 6 4.6345 5.4168 -1.0866 9 6 5.2185 6.6958 -1.0749 10 6 5.9870 7.1340 -2.1759 11 1 6.0932 8.1904 -2.3741 12 6 6.6103 6.2001 -3.0096 13 7 6.7777 4.9677 -2.6018 14 14 7.2040 6.7116 -4.7053 15 1 8.6051 7.1949 -4.6143 16 1 7.1409 5.5466 -5.6241 17 1 6.3378 7.7997 -5.2258 18 6 5.0352 7.5384 0.0396 19 6 4.2944 7.1161 1.1047 20 6 3.7129 5.8522 1.1019 21 8 2.9784 5.4441 2.1664 22 6 2.8450 6.3625 3.2531 23 6 1.8696 3.5126 0.0002 24 8 1.0829 4.6173 0.0007 25 6 -0.3305 4.4072 0.0013 26 7 1.3147 2.3125 0.0001 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 4.0181 0.3621 -0.0005 31 1 5.1347 2.5775 -0.0109 32 1 4.7668 4.7666 -1.9387 33 1 7.2098 4.3198 -3.1801 34 1 5.4824 8.5215 0.0507 35 1 4.1579 7.7675 1.9552 36 1 3.8315 6.5996 3.6515 37 1 2.3665 7.2760 2.9001 38 1 2.2357 5.9121 4.0366 39 1 -0.6149 3.8457 -0.8886 40 1 -0.6140 3.8454 0.8914 41 1 -0.8410 5.3703 0.0022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241575159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:35 Heat of formation + Delta-G solvation = -69.771295 kcal Electronic energy + Delta-G solvation = -26438.519276 eV Core-core repulsion = 22670.052429 eV Total energy + Delta-G solvation = -3768.466846 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.89220 -40.40356 -39.73967 -38.20671 -37.82151 -35.21179 -33.93021 -32.40911 -30.90660 -29.98045 -28.71371 -28.26912 -27.31677 -26.36566 -24.47915 -23.86626 -22.43295 -21.90410 -19.85966 -19.17716 -18.79231 -18.47557 -17.34006 -17.07374 -16.92840 -16.66393 -16.41600 -16.20431 -16.05468 -15.87677 -15.00007 -14.75732 -14.63360 -14.37564 -14.35624 -14.00265 -13.73823 -13.49057 -13.13724 -12.86753 -12.80178 -12.72530 -12.53945 -12.50804 -12.36431 -12.30012 -11.77450 -11.56824 -11.54396 -11.32124 -10.89618 -10.81568 -10.70744 -9.49101 -8.98065 -8.73924 -8.47538 -6.16183 0.15223 0.29722 0.99104 1.07880 1.41530 1.51164 1.56693 2.01682 2.25074 2.25916 2.69746 2.81018 2.88804 3.29172 3.69198 3.88579 4.17096 4.25829 4.33445 4.40821 4.41317 4.44234 4.44897 4.50122 4.50735 4.51738 4.69323 4.71132 4.75603 4.78328 4.88811 5.11724 5.23187 5.33455 5.33736 5.39948 5.61591 5.66425 5.90177 5.93392 6.10813 6.31750 6.44510 6.62965 6.72975 6.87381 7.01515 7.15580 8.43171 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.012230 B = 0.004926 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.849950 B = 5682.967779 C = 7052.506611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C 0.338 3.662 4 C -0.221 4.221 5 C -0.005 4.005 6 C -0.138 4.138 7 C -0.054 4.054 8 C -0.130 4.130 9 C 0.055 3.945 10 C -0.501 4.501 11 H 0.073 0.927 12 C 0.038 3.962 13 N -0.829 5.829 14 Si 0.974 3.026 15 H -0.263 1.263 16 H -0.269 1.269 17 H -0.262 1.262 18 C -0.200 4.200 19 C -0.172 4.172 20 C 0.030 3.970 21 O -0.334 6.334 22 C 0.029 3.971 23 C 0.364 3.636 24 O -0.306 6.306 25 C 0.037 3.963 26 N -0.594 5.594 27 H 0.128 0.872 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.167 0.833 31 H 0.148 0.852 32 H 0.108 0.892 33 H 0.286 0.714 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.110 0.890 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.638 -6.530 5.497 13.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.218 6.218 3 C 0.160 3.840 4 C -0.242 4.242 5 C -0.030 4.030 6 C -0.141 4.141 7 C -0.055 4.055 8 C -0.150 4.150 9 C 0.053 3.947 10 C -0.531 4.531 11 H 0.091 0.909 12 C -0.176 4.176 13 N -0.456 5.456 14 Si 0.795 3.205 15 H -0.187 1.187 16 H -0.194 1.194 17 H -0.186 1.186 18 C -0.219 4.219 19 C -0.191 4.191 20 C -0.015 4.015 21 O -0.250 6.250 22 C -0.066 4.066 23 C 0.186 3.814 24 O -0.212 6.212 25 C -0.057 4.057 26 N -0.333 5.333 27 H 0.146 0.854 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.185 0.815 31 H 0.166 0.834 32 H 0.126 0.874 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.146 0.854 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.128 0.872 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.399 -6.982 5.470 14.443 hybrid contribution 0.937 0.690 -0.638 1.327 sum -10.462 -6.292 4.832 13.130 Atomic orbital electron populations 1.23066 0.75928 1.04759 1.02073 1.86234 1.24346 1.23391 1.87786 1.19567 0.89414 0.83638 0.91357 1.20989 0.91609 0.99469 1.12134 1.21472 1.00653 0.89806 0.91052 1.18700 0.90286 0.94654 1.10446 1.17664 1.01737 0.92226 0.93920 1.21126 0.98892 0.98044 0.96943 1.17795 0.91989 0.92222 0.92688 1.19627 1.28705 0.94521 1.10281 0.90876 1.26580 0.93992 0.94334 1.02697 1.69870 1.33209 1.05028 1.37470 0.85333 0.79119 0.78963 0.77083 1.18744 1.19369 1.18611 1.20821 1.05737 1.00887 0.94500 1.20621 1.02780 0.95546 1.00159 1.18642 0.99921 0.93862 0.89049 1.85862 1.68807 1.43775 1.26519 1.23032 1.01610 0.93848 0.88111 1.19368 0.87952 0.83862 0.90215 1.86385 1.20375 1.27443 1.86969 1.23026 0.76685 1.03942 1.02075 1.66687 1.41311 0.98130 1.27210 0.85443 0.92628 0.92833 0.81548 0.83437 0.87440 0.90388 0.87803 0.85432 0.93202 0.93077 0.87209 0.92499 0.92182 0.86672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.37 113.37 1.18 1.90 16 2 O -0.31 -8.54 10.47 -89.69 -0.94 -9.48 16 3 C 0.34 11.13 7.49 84.78 0.63 11.76 16 4 C -0.22 -7.20 10.02 22.44 0.22 -6.97 16 5 C -0.01 -0.20 9.87 22.64 0.22 0.02 16 6 C -0.14 -5.98 4.95 -19.85 -0.10 -6.08 16 7 C -0.05 -2.63 4.97 -19.99 -0.10 -2.73 16 8 C -0.13 -6.98 8.35 22.94 0.19 -6.79 16 9 C 0.06 3.00 5.57 -21.31 -0.12 2.89 16 10 C -0.50 -27.27 9.03 23.40 0.21 -27.06 16 11 H 0.07 3.84 7.90 -2.91 -0.02 3.82 16 12 C 0.04 1.92 5.14 85.22 0.44 2.36 16 13 N -0.83 -43.34 10.97 21.81 0.24 -43.10 16 14 Si 0.97 38.87 29.59 68.60 2.03 40.90 16 15 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 16 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 17 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 18 C -0.20 -9.86 9.72 22.51 0.22 -9.64 16 19 C -0.17 -7.67 8.95 22.06 0.20 -7.47 16 20 C 0.03 1.36 6.42 23.02 0.15 1.50 16 21 O -0.33 -13.56 9.48 -89.36 -0.85 -14.41 16 22 C 0.03 0.85 9.80 113.37 1.11 1.96 16 23 C 0.36 14.60 7.20 85.04 0.61 15.21 16 24 O -0.31 -11.87 9.48 -89.26 -0.85 -12.72 16 25 C 0.04 1.02 10.38 113.37 1.18 2.20 16 26 N -0.59 -20.90 8.04 -421.20 -3.39 -24.29 16 27 H 0.13 1.61 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 29 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 30 H 0.17 4.33 8.06 -2.91 -0.02 4.31 16 31 H 0.15 5.56 8.06 -2.91 -0.02 5.53 16 32 H 0.11 6.06 6.20 -2.91 -0.02 6.04 16 33 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 34 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 35 H 0.13 4.74 6.25 -2.91 -0.02 4.72 16 36 H 0.05 1.38 7.65 -2.39 -0.02 1.36 16 37 H 0.05 1.41 7.65 -2.39 -0.02 1.39 16 38 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 40 H 0.06 1.52 8.11 -2.38 -0.02 1.50 16 41 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -65.73 352.57 3.55 -62.19 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 1.05 Total: 27.85 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 6.25 Total: -26.94 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: -3.15 Total: -67.39 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -2.63 Total: -36.61 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -65.73 3.55 -62.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241575159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.586 kcal (2) G-P(sol) polarization free energy of solvation -65.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds