Wall clock time and date at job start Tue Mar 31 2020 11:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00005 * 2 1 4 4 C 1.53007 * 109.47311 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47105 * 64.99459 * 4 3 2 6 6 C 1.35925 * 119.40662 * 90.00286 * 5 4 3 7 7 C 1.34996 * 120.95942 * 180.02562 * 6 5 4 8 8 C 1.41362 * 119.76567 * 359.97438 * 7 6 5 9 9 C 1.48043 * 120.56408 * 180.02562 * 8 7 6 10 10 C 1.39592 * 120.06474 * 65.26808 * 9 8 7 11 11 C 1.37752 * 119.93616 * 180.23544 * 10 9 8 12 12 C 1.39059 * 120.06310 * 359.49606 * 11 10 9 13 13 O 1.35644 * 119.93547 * 180.23107 * 12 11 10 14 14 C 1.34800 * 117.00037 * 354.45460 * 13 12 11 15 15 H 1.08000 * 119.99973 * 5.05036 * 14 13 12 16 16 C 1.38682 * 120.00106 * 185.05469 * 14 13 12 17 17 N 1.31530 * 120.00362 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99772 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47184 * 90.00169 * 18 16 14 20 20 H 1.48507 * 109.46903 * 209.99939 * 18 16 14 21 21 H 1.48496 * 109.47089 * 329.99969 * 18 16 14 22 22 C 1.39071 * 120.12935 * 0.25721 * 12 11 10 23 23 C 1.37750 * 120.05899 * 359.97438 * 22 12 11 24 24 C 1.38757 * 118.87536 * 0.28250 * 8 7 6 25 25 C 1.34573 * 119.40855 * 270.02520 * 5 4 3 26 26 O 1.22103 * 119.91466 * 0.02562 * 25 5 4 27 27 H 1.09003 * 109.46825 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47189 * 300.00441 * 1 2 3 29 29 H 1.09003 * 109.46981 * 60.00896 * 1 2 3 30 30 H 1.08996 * 109.47615 * 59.99840 * 3 2 1 31 31 H 1.08998 * 109.47078 * 299.99506 * 3 2 1 32 32 H 1.09002 * 109.46614 * 305.00166 * 4 3 2 33 33 H 1.08994 * 109.47453 * 184.99749 * 4 3 2 34 34 H 1.08003 * 119.52226 * 359.97438 * 6 5 4 35 35 H 1.07992 * 120.11871 * 179.97438 * 7 6 5 36 36 H 1.07999 * 120.02590 * 359.97438 * 10 9 8 37 37 H 1.08000 * 119.96659 * 179.77675 * 11 10 9 38 38 H 0.96994 * 120.00284 * 179.97438 * 17 16 14 39 39 H 1.07990 * 119.96937 * 180.02562 * 22 12 11 40 40 H 1.07995 * 120.03272 * 180.02562 * 23 22 12 41 41 H 1.07995 * 120.47820 * 179.70556 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.2627 1.3507 -2.3216 7 6 4.6713 0.8119 -3.4900 8 6 4.8059 -0.5904 -3.6071 9 6 5.2532 -1.2001 -4.8799 10 6 6.5421 -0.9562 -5.3572 11 6 6.9538 -1.5209 -6.5442 12 6 6.0905 -2.3417 -7.2616 13 8 6.5002 -2.9003 -8.4278 14 6 7.7100 -2.5291 -8.8923 15 1 8.3398 -1.8808 -8.3011 16 6 8.1459 -2.9796 -10.1294 17 7 9.3262 -2.6170 -10.5829 18 14 7.0562 -4.1002 -11.1523 19 1 6.1900 -3.2777 -12.0346 20 1 7.9047 -4.9917 -11.9834 21 1 6.2079 -4.9219 -10.2523 22 6 4.8076 -2.5907 -6.7860 23 6 4.3888 -2.0248 -5.6020 24 6 4.5066 -1.3862 -2.5105 25 6 4.0912 -0.7752 -1.3198 26 8 3.8274 -1.4600 -0.3439 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8507 0.5685 0.8427 33 1 3.9785 2.1765 0.0902 34 1 4.1608 2.4226 -2.2367 35 1 4.8945 1.4499 -4.3323 36 1 7.2143 -0.3220 -4.7984 37 1 7.9497 -1.3297 -6.9158 38 1 9.6312 -2.9324 -11.4479 39 1 4.1394 -3.2288 -7.3450 40 1 3.3926 -2.2187 -5.2328 41 1 4.5959 -2.4606 -2.5727 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:51 Heat of formation + Delta-G solvation = -41.728003 kcal Electronic energy + Delta-G solvation = -24841.436869 eV Core-core repulsion = 21074.186071 eV Total energy + Delta-G solvation = -3767.250798 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24050 -39.24554 -38.10545 -37.19626 -36.43668 -34.53878 -32.47326 -30.89005 -30.41620 -29.60917 -28.57265 -26.62320 -25.54555 -24.06762 -23.43535 -22.35336 -21.94484 -20.42021 -17.97733 -17.76669 -17.41848 -17.30508 -16.60771 -16.30194 -16.14866 -15.64810 -14.95378 -14.78482 -14.58649 -14.10967 -14.04343 -13.91379 -13.82933 -13.22345 -13.08728 -12.79796 -12.63331 -12.46546 -12.37158 -12.23362 -11.92466 -11.67649 -11.41469 -11.34070 -11.18533 -10.89065 -10.75634 -10.23825 -10.03367 -9.77105 -9.70448 -9.42832 -8.93007 -8.38286 -7.87597 -7.37205 -6.49718 -4.15809 0.83976 1.88007 2.06990 2.20157 2.61796 3.17981 3.21708 3.36197 3.40219 3.78140 4.17529 4.33915 4.45604 4.53521 4.60495 4.75219 4.77204 4.87019 4.92123 5.01562 5.02762 5.06310 5.15406 5.33956 5.41671 5.46171 5.47188 5.54891 5.62120 5.94903 6.03973 6.13920 6.19766 6.44719 6.49336 6.57820 6.71863 6.83751 6.98359 7.09994 7.16949 7.19444 7.49786 7.71514 7.94658 8.23158 8.84836 9.46128 10.57315 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.032123 B = 0.002406 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.435436 B =11633.131944 C =12024.522115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.044 3.956 4 C 0.093 3.907 5 N -0.499 5.499 6 C 0.116 3.884 7 C -0.209 4.209 8 C 0.084 3.916 9 C -0.167 4.167 10 C -0.047 4.047 11 C -0.223 4.223 12 C 0.167 3.833 13 O -0.211 6.211 14 C -0.391 4.391 15 H 0.109 0.891 16 C 0.065 3.935 17 N -0.875 5.875 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.193 4.193 23 C -0.051 4.051 24 C -0.246 4.246 25 C 0.521 3.479 26 O -0.545 6.545 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.113 0.887 37 H 0.136 0.864 38 H 0.281 0.719 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.515 11.642 17.680 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.033 4.033 4 C -0.029 4.029 5 N -0.212 5.212 6 C -0.009 4.009 7 C -0.233 4.233 8 C 0.080 3.920 9 C -0.168 4.168 10 C -0.066 4.066 11 C -0.242 4.242 12 C 0.114 3.886 13 O -0.115 6.115 14 C -0.467 4.467 15 H 0.126 0.874 16 C -0.139 4.139 17 N -0.512 5.512 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.212 4.212 23 C -0.070 4.070 24 C -0.267 4.267 25 C 0.324 3.676 26 O -0.427 6.427 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.174 0.826 35 H 0.163 0.837 36 H 0.131 0.869 37 H 0.154 0.846 38 H 0.091 0.909 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.504 10.844 17.991 24.973 hybrid contribution -0.396 0.016 -0.687 0.793 sum -13.900 10.860 17.305 24.710 Atomic orbital electron populations 1.22748 0.81276 1.02990 0.99538 1.88154 1.19284 1.26071 1.95235 1.22911 0.93343 0.86282 1.00809 1.21963 0.93487 0.99725 0.87719 1.45429 1.55584 1.08359 1.11854 1.21716 0.95738 0.96722 0.86765 1.20834 1.09596 0.95058 0.97805 1.19335 0.88037 0.92208 0.92374 1.18241 0.96000 1.06345 0.96193 1.20750 0.94044 0.97259 0.94518 1.21203 1.01889 1.03982 0.97129 1.19258 0.92290 0.90694 0.86383 1.83540 1.36087 1.59023 1.32847 1.20805 0.90553 1.31735 1.03574 0.87420 1.24493 0.96133 0.97307 0.96003 1.69627 1.17903 1.43414 1.20210 0.86177 0.80215 0.80583 0.79941 1.19791 1.20685 1.18261 1.20130 0.94799 1.07269 0.99034 1.20637 0.98141 0.94696 0.93479 1.22497 1.10802 1.01371 0.92048 1.16872 0.80120 0.80344 0.90284 1.90951 1.52653 1.60796 1.38326 0.89507 0.94236 0.94287 0.91850 0.92961 0.87468 0.87856 0.82593 0.83737 0.86898 0.84600 0.90889 0.86181 0.86583 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.37 -4.34 9.42 -44.49 -0.42 -4.76 16 3 C 0.04 0.34 6.28 37.16 0.23 0.58 16 4 C 0.09 0.75 5.78 -4.04 -0.02 0.72 16 5 N -0.50 -5.51 2.57 -119.97 -0.31 -5.82 16 6 C 0.12 1.02 10.25 -16.89 -0.17 0.84 16 7 C -0.21 -2.30 9.75 -39.55 -0.39 -2.69 16 8 C 0.08 1.19 5.34 -104.50 -0.56 0.63 16 9 C -0.17 -2.72 5.36 -104.86 -0.56 -3.28 16 10 C -0.05 -0.82 9.74 -39.25 -0.38 -1.20 16 11 C -0.22 -4.59 9.15 -39.45 -0.36 -4.95 16 12 C 0.17 3.71 6.65 -38.97 -0.26 3.45 16 13 O -0.21 -5.39 8.58 0.46 0.00 -5.39 16 14 C -0.39 -10.69 9.94 30.90 0.31 -10.39 16 15 H 0.11 2.99 5.42 -52.49 -0.28 2.70 16 16 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 17 N -0.87 -24.63 13.96 55.48 0.77 -23.86 16 18 Si 0.91 21.14 28.62 -169.99 -4.86 16.27 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 22 C -0.19 -3.69 9.98 -39.45 -0.39 -4.09 16 23 C -0.05 -0.86 9.73 -39.25 -0.38 -1.24 16 24 C -0.25 -3.75 9.74 -38.68 -0.38 -4.12 16 25 C 0.52 7.96 7.00 -15.64 -0.11 7.85 16 26 O -0.55 -10.09 15.77 -4.43 -0.07 -10.16 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.11 1.05 7.37 -51.93 -0.38 0.67 16 33 H 0.10 0.40 8.00 -51.93 -0.42 -0.02 16 34 H 0.16 0.67 8.02 -52.48 -0.42 0.25 16 35 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.14 2.93 5.62 -52.49 -0.30 2.63 16 38 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 41 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 355.19 15.07 5.35 5.35 Total: -1.00 -33.45 355.19 -7.10 -40.55 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.16 Total: 2.65 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -2.41 Total: -14.84 kcal Atomic # 7 Polarization: -30.15 SS G_CDS: 0.47 Total: -29.68 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.49 Total: -20.31 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.86 Total: 16.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.45 -7.10 -40.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.173 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds