Wall clock time and date at job start Tue Mar 31 2020 11:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99706 * 2 1 4 4 O 1.42892 * 109.47164 * 74.99705 * 3 2 1 5 5 C 1.35798 * 117.00171 * 75.00257 * 4 3 2 6 6 C 1.39136 * 119.86622 * 359.97438 * 5 4 3 7 7 C 1.37682 * 120.22109 * 180.02562 * 6 5 4 8 8 C 1.39749 * 119.95901 * 359.97438 * 7 6 5 9 9 C 1.47707 * 120.12374 * 180.02562 * 8 7 6 10 10 C 1.40407 * 120.35858 * 309.70608 * 9 8 7 11 11 C 1.36573 * 118.60212 * 179.75045 * 10 9 8 12 12 C 1.40935 * 119.26964 * 0.47912 * 11 10 9 13 13 C 1.40884 * 119.67107 * 179.75906 * 12 11 10 14 14 H 1.08001 * 119.99852 * 353.68058 * 13 12 11 15 15 C 1.40044 * 119.99916 * 173.66815 * 13 12 11 16 16 N 1.30754 * 120.00320 * 6.31412 * 15 13 12 17 17 Si 1.86807 * 119.99946 * 186.30967 * 15 13 12 18 18 H 1.48504 * 109.47012 * 94.99028 * 17 15 13 19 19 H 1.48500 * 109.47110 * 214.98870 * 17 15 13 20 20 H 1.48494 * 109.46840 * 334.99036 * 17 15 13 21 21 N 1.33819 * 120.66212 * 359.78771 * 12 11 10 22 22 C 1.31157 * 121.51042 * 359.97186 * 21 12 11 23 23 C 1.40291 * 119.74727 * 0.02562 * 8 7 6 24 24 O 1.35761 * 120.10932 * 179.97438 * 23 8 7 25 25 C 1.42900 * 117.00209 * 180.02562 * 24 23 8 26 26 C 1.38376 * 119.77688 * 0.25323 * 23 8 7 27 27 H 1.08993 * 109.47034 * 300.00241 * 1 2 3 28 28 H 1.09002 * 109.46980 * 60.00078 * 1 2 3 29 29 H 1.09002 * 109.46562 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47146 * 314.99871 * 3 2 1 31 31 H 1.09001 * 109.46964 * 195.00036 * 3 2 1 32 32 H 1.07994 * 119.89123 * 359.97438 * 6 5 4 33 33 H 1.07997 * 120.02363 * 179.97438 * 7 6 5 34 34 H 1.08002 * 120.69722 * 359.97438 * 10 9 8 35 35 H 1.07999 * 120.36368 * 180.26667 * 11 10 9 36 36 H 0.97002 * 119.99968 * 179.97438 * 16 15 13 37 37 H 1.08002 * 119.66728 * 179.97438 * 22 21 12 38 38 H 1.09004 * 109.47224 * 59.99561 * 25 24 23 39 39 H 1.09006 * 109.47214 * 300.00423 * 25 24 23 40 40 H 1.08998 * 109.47671 * 180.02562 * 25 24 23 41 41 H 1.08003 * 119.98085 * 179.74540 * 26 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8825 1.3013 5 6 2.7181 1.4136 2.2661 6 6 3.6379 0.4150 1.9621 7 6 4.4853 -0.0661 2.9348 8 6 4.4229 0.4497 4.2321 9 6 5.3306 -0.0634 5.2783 10 6 5.4535 -1.4450 5.4961 11 6 6.3071 -1.8801 6.4693 12 6 7.0266 -0.9350 7.2278 13 6 7.9056 -1.3743 8.2373 14 1 7.9499 -2.4218 8.4964 15 6 8.7221 -0.4527 8.9046 16 7 8.5821 0.8277 8.6798 17 14 10.0112 -1.0527 10.1162 18 1 11.3201 -1.1760 9.4256 19 1 10.1304 -0.0818 11.2334 20 1 9.6078 -2.3774 10.6525 21 7 6.8828 0.3757 6.9991 22 6 6.0746 0.8245 6.0687 23 6 3.4948 1.4566 4.5370 24 8 3.4275 1.9626 5.7950 25 6 2.4579 2.9853 6.0319 26 6 2.6443 1.9282 3.5526 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.4942 1.9330 -0.7267 31 1 3.0649 1.2337 -0.2660 32 1 3.6868 0.0152 0.9601 33 1 5.1978 -0.8416 2.6955 34 1 4.8876 -2.1489 4.9039 35 1 6.4268 -2.9367 6.6580 36 1 9.1474 1.4660 9.1423 37 1 5.9811 1.8887 5.9097 38 1 1.4616 2.5979 5.8183 39 1 2.6629 3.8375 5.3840 40 1 2.5097 3.3008 7.0739 41 1 1.9258 2.7004 3.7846 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244922258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:47 Heat of formation + Delta-G solvation = -62.011619 kcal Electronic energy + Delta-G solvation = -25373.338549 eV Core-core repulsion = 21605.208187 eV Total energy + Delta-G solvation = -3768.130362 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.31717 -39.16914 -37.93937 -37.22900 -35.84766 -33.67049 -31.40998 -30.44293 -30.00876 -28.64902 -27.78212 -26.91197 -25.75416 -24.89851 -22.32626 -21.98156 -21.23718 -20.32049 -18.68418 -17.46647 -17.07412 -16.92014 -16.36886 -15.85967 -15.52949 -15.43848 -15.24850 -14.76103 -14.21280 -14.03518 -13.97580 -13.71321 -13.61698 -12.89760 -12.67517 -12.36114 -12.21040 -12.08771 -11.76674 -11.71457 -11.49670 -11.32828 -11.18338 -11.02726 -10.88848 -10.66093 -10.46264 -10.32270 -10.28116 -9.87807 -9.37075 -8.40151 -8.20910 -7.91530 -7.50785 -7.02493 -6.41382 -4.48635 1.67301 1.78730 2.78015 3.07754 3.11334 3.15364 3.18074 3.19929 3.50457 3.72104 3.92511 4.18236 4.71990 4.75196 4.90899 5.05253 5.13579 5.18690 5.26335 5.36994 5.38838 5.45113 5.50268 5.67245 5.76579 5.87144 5.97824 6.05857 6.19936 6.23384 6.54336 6.64575 6.66742 6.79278 6.83679 6.94701 7.03428 7.11492 7.45179 7.48468 7.60826 7.80933 7.90768 8.07065 8.23652 8.64646 8.94042 10.14203 10.29913 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.026190 B = 0.002886 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.836957 B = 9699.771296 C =10350.808740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.394 6.394 3 C 0.213 3.787 4 O -0.335 6.335 5 C 0.133 3.867 6 C -0.223 4.223 7 C -0.059 4.059 8 C -0.037 4.037 9 C -0.260 4.260 10 C -0.038 4.038 11 C -0.275 4.275 12 C 0.255 3.745 13 C -0.422 4.422 14 H 0.085 0.915 15 C 0.067 3.933 16 N -0.707 5.707 17 Si 0.908 3.092 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.261 1.261 21 N -0.490 5.490 22 C 0.166 3.834 23 C 0.151 3.849 24 O -0.293 6.293 25 C 0.026 3.974 26 C -0.236 4.236 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.274 0.726 37 H 0.118 0.882 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.097 0.903 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.013 3.410 -12.534 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.313 6.313 3 C 0.100 3.900 4 O -0.252 6.252 5 C 0.089 3.911 6 C -0.242 4.242 7 C -0.077 4.077 8 C -0.039 4.039 9 C -0.266 4.266 10 C -0.062 4.062 11 C -0.297 4.297 12 C 0.131 3.869 13 C -0.452 4.452 14 H 0.103 0.897 15 C -0.160 4.160 16 N -0.327 5.327 17 Si 0.732 3.268 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.185 1.185 21 N -0.201 5.201 22 C -0.002 4.002 23 C 0.105 3.895 24 O -0.205 6.205 25 C -0.069 4.069 26 C -0.255 4.255 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.341 4.101 -11.717 16.814 hybrid contribution -0.364 -0.560 -0.339 0.749 sum -11.705 3.541 -12.057 17.173 Atomic orbital electron populations 1.22801 0.80466 1.02982 1.00356 1.88075 1.20844 1.28733 1.93664 1.24127 0.99786 0.83139 0.82943 1.86118 1.58156 1.60775 1.20130 1.18495 0.90463 0.94230 0.87898 1.21000 1.00682 1.01764 1.00786 1.20909 0.97396 0.98582 0.90857 1.18209 0.96032 0.95912 0.93742 1.18815 1.08657 0.93834 1.05249 1.20573 0.95903 0.93639 0.96040 1.21369 1.06060 0.98898 1.03401 1.18633 0.89868 0.87433 0.90927 1.19635 1.16159 0.95253 1.14184 0.89736 1.26134 0.98066 0.94625 0.97148 1.70162 1.29978 1.01782 1.30817 0.86303 0.80768 0.79845 0.79873 1.19406 1.20049 1.18452 1.68794 1.19135 1.14965 1.17244 1.22648 0.90337 0.97601 0.89595 1.18864 0.93667 0.93789 0.83194 1.86261 1.55836 1.52301 1.26144 1.23018 0.91401 0.89852 1.02630 1.20202 1.06114 1.07711 0.91506 0.93253 0.93920 0.89527 0.88220 0.88018 0.85690 0.85477 0.88805 0.88404 0.91506 0.86492 0.93188 0.93028 0.88477 0.85456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.89 101.05 1.10 1.36 16 2 O -0.39 -4.44 10.17 -59.04 -0.60 -5.04 16 3 C 0.21 2.12 6.39 101.05 0.65 2.76 16 4 O -0.34 -4.45 10.18 -42.92 -0.44 -4.89 16 5 C 0.13 2.06 6.63 -39.06 -0.26 1.80 16 6 C -0.22 -3.45 8.76 -39.45 -0.35 -3.80 16 7 C -0.06 -1.03 9.53 -39.22 -0.37 -1.40 16 8 C -0.04 -0.75 5.51 -104.69 -0.58 -1.32 16 9 C -0.26 -6.03 5.30 -104.46 -0.55 -6.58 16 10 C -0.04 -0.87 9.60 -39.37 -0.38 -1.25 16 11 C -0.27 -6.85 9.76 -39.16 -0.38 -7.24 16 12 C 0.26 7.07 6.54 -84.98 -0.56 6.52 16 13 C -0.42 -11.32 9.11 -37.90 -0.35 -11.67 16 14 H 0.08 2.11 7.86 -52.49 -0.41 1.70 16 15 C 0.07 1.70 5.49 -17.33 -0.10 1.60 16 16 N -0.71 -18.90 11.47 55.55 0.64 -18.27 16 17 Si 0.91 18.51 29.57 -169.99 -5.03 13.48 16 18 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 21 N -0.49 -13.80 7.86 -10.82 -0.08 -13.89 16 22 C 0.17 4.20 9.97 -17.09 -0.17 4.03 16 23 C 0.15 2.80 6.61 -38.76 -0.26 2.54 16 24 O -0.29 -5.44 8.86 -18.99 -0.17 -5.61 16 25 C 0.03 0.35 9.81 101.05 0.99 1.34 16 26 C -0.24 -3.80 8.96 -39.34 -0.35 -4.15 16 27 H 0.05 0.45 8.03 -51.93 -0.42 0.04 16 28 H 0.04 0.27 8.11 -51.93 -0.42 -0.15 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.68 8.01 -51.93 -0.42 0.26 16 31 H 0.10 0.91 6.69 -51.93 -0.35 0.56 16 32 H 0.13 1.68 5.82 -52.49 -0.31 1.37 16 33 H 0.13 2.09 8.05 -52.49 -0.42 1.67 16 34 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.27 6.59 8.29 -40.82 -0.34 6.25 16 37 H 0.12 2.82 7.69 -52.49 -0.40 2.42 16 38 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 39 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 40 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.13 1.78 6.29 -52.48 -0.33 1.45 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -31.74 350.84 -7.40 -39.14 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.10 Total: 5.26 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -1.91 Total: -15.48 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.55 Total: -32.15 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -1.21 Total: -15.54 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.74 -7.40 -39.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244922258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.875 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds