Wall clock time and date at job start Tue Mar 31 2020 11:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99706 * 2 1 4 4 O 1.42892 * 109.47164 * 74.99705 * 3 2 1 5 5 C 1.35798 * 117.00171 * 75.00257 * 4 3 2 6 6 C 1.39136 * 119.86622 * 359.97438 * 5 4 3 7 7 C 1.37682 * 120.22109 * 180.02562 * 6 5 4 8 8 C 1.39749 * 119.95901 * 359.97438 * 7 6 5 9 9 C 1.47707 * 120.12374 * 180.02562 * 8 7 6 10 10 C 1.40407 * 120.35858 * 309.70608 * 9 8 7 11 11 C 1.36573 * 118.60212 * 179.75045 * 10 9 8 12 12 C 1.40935 * 119.26964 * 0.47912 * 11 10 9 13 13 C 1.40884 * 119.67107 * 179.75906 * 12 11 10 14 14 H 1.08001 * 119.99852 * 353.68058 * 13 12 11 15 15 C 1.40044 * 119.99916 * 173.66815 * 13 12 11 16 16 N 1.30754 * 120.00320 * 6.31412 * 15 13 12 17 17 Si 1.86807 * 119.99946 * 186.30967 * 15 13 12 18 18 H 1.48504 * 109.47012 * 94.99028 * 17 15 13 19 19 H 1.48500 * 109.47110 * 214.98870 * 17 15 13 20 20 H 1.48494 * 109.46840 * 334.99036 * 17 15 13 21 21 N 1.33819 * 120.66212 * 359.78771 * 12 11 10 22 22 C 1.31157 * 121.51042 * 359.97186 * 21 12 11 23 23 C 1.40291 * 119.74727 * 0.02562 * 8 7 6 24 24 O 1.35761 * 120.10932 * 179.97438 * 23 8 7 25 25 C 1.42900 * 117.00209 * 180.02562 * 24 23 8 26 26 C 1.38376 * 119.77688 * 0.25323 * 23 8 7 27 27 H 1.08993 * 109.47034 * 300.00241 * 1 2 3 28 28 H 1.09002 * 109.46980 * 60.00078 * 1 2 3 29 29 H 1.09002 * 109.46562 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47146 * 314.99871 * 3 2 1 31 31 H 1.09001 * 109.46964 * 195.00036 * 3 2 1 32 32 H 1.07994 * 119.89123 * 359.97438 * 6 5 4 33 33 H 1.07997 * 120.02363 * 179.97438 * 7 6 5 34 34 H 1.08002 * 120.69722 * 359.97438 * 10 9 8 35 35 H 1.07999 * 120.36368 * 180.26667 * 11 10 9 36 36 H 0.97002 * 119.99968 * 179.97438 * 16 15 13 37 37 H 1.08002 * 119.66728 * 179.97438 * 22 21 12 38 38 H 1.09004 * 109.47224 * 59.99561 * 25 24 23 39 39 H 1.09006 * 109.47214 * 300.00423 * 25 24 23 40 40 H 1.08998 * 109.47671 * 180.02562 * 25 24 23 41 41 H 1.08003 * 119.98085 * 179.74540 * 26 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8825 1.3013 5 6 2.7181 1.4136 2.2661 6 6 3.6379 0.4150 1.9621 7 6 4.4853 -0.0661 2.9348 8 6 4.4229 0.4497 4.2321 9 6 5.3306 -0.0634 5.2783 10 6 5.4535 -1.4450 5.4961 11 6 6.3071 -1.8801 6.4693 12 6 7.0266 -0.9350 7.2278 13 6 7.9056 -1.3743 8.2373 14 1 7.9499 -2.4218 8.4964 15 6 8.7221 -0.4527 8.9046 16 7 8.5821 0.8277 8.6798 17 14 10.0112 -1.0527 10.1162 18 1 11.3201 -1.1760 9.4256 19 1 10.1304 -0.0818 11.2334 20 1 9.6078 -2.3774 10.6525 21 7 6.8828 0.3757 6.9991 22 6 6.0746 0.8245 6.0687 23 6 3.4948 1.4566 4.5370 24 8 3.4275 1.9626 5.7950 25 6 2.4579 2.9853 6.0319 26 6 2.6443 1.9282 3.5526 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.4942 1.9330 -0.7267 31 1 3.0649 1.2337 -0.2660 32 1 3.6868 0.0152 0.9601 33 1 5.1978 -0.8416 2.6955 34 1 4.8876 -2.1489 4.9039 35 1 6.4268 -2.9367 6.6580 36 1 9.1474 1.4660 9.1423 37 1 5.9811 1.8887 5.9097 38 1 1.4616 2.5979 5.8183 39 1 2.6629 3.8375 5.3840 40 1 2.5097 3.3008 7.0739 41 1 1.9258 2.7004 3.7846 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244922258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:46 Heat of formation + Delta-G solvation = -81.077829 kcal Electronic energy + Delta-G solvation = -25374.165322 eV Core-core repulsion = 21605.208187 eV Total energy + Delta-G solvation = -3768.957135 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52422 -40.37331 -39.73162 -38.22891 -37.06273 -35.51062 -33.06732 -32.34557 -31.31002 -30.20294 -28.58162 -28.10365 -27.18961 -26.03085 -23.92542 -23.63721 -22.73123 -21.92257 -19.79827 -19.38212 -17.99746 -17.91838 -17.54924 -17.46271 -17.00968 -16.61768 -16.52774 -15.95758 -15.87353 -15.69994 -15.03091 -14.91735 -14.70367 -14.42342 -14.20124 -13.89768 -13.84223 -13.46626 -13.12329 -12.90571 -12.78987 -12.69635 -12.66936 -12.48388 -12.37347 -12.01963 -11.79219 -11.69440 -11.55075 -11.18460 -11.12695 -10.18937 -9.77782 -9.49672 -9.45149 -8.62110 -8.29093 -6.45753 0.26659 0.47736 1.00527 1.25330 1.40837 1.55351 1.56312 2.16627 2.22876 2.54009 2.68873 2.84286 2.95956 3.84876 3.95877 4.03161 4.12251 4.13725 4.22629 4.26672 4.31349 4.39694 4.40801 4.47512 4.50425 4.57014 4.63758 4.73318 4.75916 4.85690 4.89027 4.98299 5.18088 5.23133 5.36177 5.44904 5.56993 5.64377 5.75851 5.89039 5.99889 6.15025 6.28737 6.37820 6.60804 6.73067 6.97325 8.20646 8.43933 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.026190 B = 0.002886 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.836957 B = 9699.771296 C =10350.808740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.202 3.798 4 O -0.337 6.337 5 C 0.148 3.852 6 C -0.221 4.221 7 C -0.053 4.053 8 C -0.083 4.083 9 C -0.238 4.238 10 C -0.043 4.043 11 C -0.287 4.287 12 C 0.221 3.779 13 C -0.461 4.461 14 H 0.092 0.908 15 C 0.021 3.979 16 N -0.753 5.753 17 Si 0.991 3.009 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.253 1.253 21 N -0.523 5.523 22 C 0.142 3.858 23 C 0.148 3.852 24 O -0.328 6.328 25 C 0.018 3.982 26 C -0.240 4.240 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.137 0.863 31 H 0.113 0.887 32 H 0.149 0.851 33 H 0.134 0.866 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.280 0.720 37 H 0.118 0.882 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.462 3.399 -14.493 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.090 3.910 4 O -0.253 6.253 5 C 0.103 3.897 6 C -0.240 4.240 7 C -0.072 4.072 8 C -0.085 4.085 9 C -0.243 4.243 10 C -0.066 4.066 11 C -0.309 4.309 12 C 0.096 3.904 13 C -0.492 4.492 14 H 0.110 0.890 15 C -0.201 4.201 16 N -0.374 5.374 17 Si 0.810 3.190 18 H -0.188 1.188 19 H -0.192 1.192 20 H -0.176 1.176 21 N -0.236 5.236 22 C -0.023 4.023 23 C 0.102 3.898 24 O -0.241 6.241 25 C -0.076 4.076 26 C -0.259 4.259 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.154 0.846 31 H 0.130 0.870 32 H 0.167 0.833 33 H 0.152 0.848 34 H 0.142 0.858 35 H 0.130 0.870 36 H 0.090 0.910 37 H 0.135 0.865 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.834 4.104 -13.716 19.227 hybrid contribution -0.208 -0.458 -0.030 0.504 sum -13.042 3.646 -13.746 19.296 Atomic orbital electron populations 1.22967 0.79249 1.03838 1.01091 1.88049 1.22305 1.29420 1.93582 1.24631 1.01165 0.83502 0.81701 1.86154 1.57266 1.60849 1.21055 1.18641 0.89753 0.93020 0.88249 1.21189 0.99915 1.01536 1.01325 1.20996 0.97598 0.98297 0.90278 1.18194 0.97642 0.98546 0.94093 1.19078 1.07141 0.93621 1.04478 1.20913 0.95633 0.94334 0.95752 1.21572 1.06328 0.99300 1.03703 1.19082 0.91166 0.87887 0.92245 1.19975 1.17669 0.96054 1.15456 0.89039 1.27099 0.99881 0.94437 0.98722 1.70267 1.31487 1.03196 1.32471 0.85076 0.77345 0.79460 0.77073 1.18769 1.19194 1.17621 1.68702 1.20391 1.15765 1.18698 1.22785 0.91048 0.98118 0.90390 1.18941 0.93787 0.93314 0.83789 1.86211 1.57619 1.53716 1.26548 1.23311 0.91155 0.89303 1.03826 1.20369 1.05997 1.08144 0.91373 0.94211 0.91448 0.88793 0.84609 0.86969 0.83302 0.84847 0.85828 0.87011 0.90962 0.86499 0.91513 0.91356 0.87403 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.89 113.37 1.23 1.57 16 2 O -0.41 -7.91 10.17 -126.21 -1.28 -9.20 16 3 C 0.20 3.22 6.39 113.37 0.72 3.94 16 4 O -0.34 -7.74 10.18 -68.52 -0.70 -8.44 16 5 C 0.15 4.17 6.63 22.61 0.15 4.32 16 6 C -0.22 -6.24 8.76 22.35 0.20 -6.05 16 7 C -0.05 -1.79 9.53 22.50 0.21 -1.57 16 8 C -0.08 -3.31 5.51 -19.91 -0.11 -3.42 16 9 C -0.24 -11.27 5.30 -19.76 -0.10 -11.37 16 10 C -0.04 -1.98 9.60 22.41 0.22 -1.77 16 11 C -0.29 -14.69 9.76 22.54 0.22 -14.47 16 12 C 0.22 12.79 6.54 40.15 0.26 13.05 16 13 C -0.46 -25.74 9.11 23.36 0.21 -25.53 16 14 H 0.09 4.74 7.86 -2.91 -0.02 4.71 16 15 C 0.02 1.08 5.49 85.29 0.47 1.55 16 16 N -0.75 -42.02 11.47 21.84 0.25 -41.77 16 17 Si 0.99 38.80 29.57 68.60 2.03 40.82 16 18 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 19 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 21 N -0.52 -31.02 7.86 -188.14 -1.48 -32.50 16 22 C 0.14 7.54 9.97 85.28 0.85 8.39 16 23 C 0.15 5.39 6.61 22.80 0.15 5.54 16 24 O -0.33 -12.24 8.86 -90.88 -0.80 -13.04 16 25 C 0.02 0.46 9.81 113.37 1.11 1.57 16 26 C -0.24 -7.23 8.96 22.43 0.20 -7.02 16 27 H 0.04 0.62 8.03 -2.39 -0.02 0.60 16 28 H 0.07 0.60 8.11 -2.39 -0.02 0.58 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.14 1.20 8.01 -2.39 -0.02 1.18 16 31 H 0.11 1.55 6.69 -2.39 -0.02 1.54 16 32 H 0.15 3.47 5.82 -2.91 -0.02 3.45 16 33 H 0.13 4.20 8.05 -2.91 -0.02 4.17 16 34 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 35 H 0.11 5.23 8.06 -2.91 -0.02 5.20 16 36 H 0.28 14.03 8.29 -92.71 -0.77 13.26 16 37 H 0.12 5.99 7.69 -2.91 -0.02 5.96 16 38 H 0.07 1.43 7.65 -2.39 -0.02 1.41 16 39 H 0.07 1.46 7.67 -2.38 -0.02 1.44 16 40 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.15 3.75 6.29 -2.91 -0.02 3.73 16 Total: -1.00 -72.06 350.84 5.06 -67.00 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 1.05 Total: 28.39 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 6.00 Total: -31.27 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -1.23 Total: -74.26 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -2.79 Total: -30.68 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.82 kcal Total: -72.06 5.06 -67.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244922258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.078 kcal (2) G-P(sol) polarization free energy of solvation -72.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds