Wall clock time and date at job start Tue Mar 31 2020 11:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00439 * 2 1 4 4 O 1.42899 * 109.47319 * 74.99498 * 3 2 1 5 5 C 1.35846 * 116.99689 * 75.00319 * 4 3 2 6 6 C 1.38948 * 119.90166 * 0.02562 * 5 4 3 7 7 C 1.37848 * 120.18922 * 179.72096 * 6 5 4 8 8 C 1.39394 * 119.98385 * 0.53215 * 7 6 5 9 9 C 1.48221 * 120.10068 * 179.74930 * 8 7 6 10 10 C 1.40110 * 120.83121 * 129.71852 * 9 8 7 11 11 C 1.38445 * 119.41840 * 180.02562 * 10 9 8 12 12 N 1.31517 * 121.15333 * 0.02562 * 11 10 9 13 13 C 1.33667 * 121.81196 * 359.97438 * 12 11 10 14 14 C 1.41435 * 119.77505 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99664 * 187.07525 * 14 13 12 16 16 C 1.40021 * 120.00323 * 7.07643 * 14 13 12 17 17 N 1.30742 * 120.00414 * 182.55358 * 16 14 13 18 18 Si 1.86807 * 119.99952 * 2.55173 * 16 14 13 19 19 H 1.48500 * 109.47039 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.46811 * 300.00180 * 18 16 14 21 21 H 1.48501 * 109.46865 * 60.00196 * 18 16 14 22 22 C 1.39419 * 120.82714 * 310.02364 * 9 8 7 23 23 C 1.39898 * 119.80282 * 359.46613 * 8 7 6 24 24 O 1.35811 * 120.09229 * 180.22596 * 23 8 7 25 25 C 1.42899 * 116.99792 * 180.02562 * 24 23 8 26 26 C 1.38464 * 119.81288 * 0.26005 * 23 8 7 27 27 H 1.09001 * 109.47044 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47062 * 300.00190 * 1 2 3 29 29 H 1.08999 * 109.46922 * 60.00213 * 1 2 3 30 30 H 1.08999 * 109.46566 * 315.00269 * 3 2 1 31 31 H 1.08991 * 109.47674 * 195.00167 * 3 2 1 32 32 H 1.08012 * 119.90809 * 359.97438 * 6 5 4 33 33 H 1.07999 * 120.00804 * 180.28136 * 7 6 5 34 34 H 1.07997 * 120.28860 * 0.04991 * 10 9 8 35 35 H 1.07998 * 119.42056 * 180.02562 * 11 10 9 36 36 H 0.97000 * 119.99771 * 354.84485 * 17 16 14 37 37 H 1.08006 * 120.58522 * 359.97052 * 22 9 8 38 38 H 1.09002 * 109.47759 * 300.00944 * 25 24 23 39 39 H 1.09003 * 109.46956 * 60.00975 * 25 24 23 40 40 H 1.08997 * 109.47258 * 180.02562 * 25 24 23 41 41 H 1.07999 * 119.99223 * 179.97438 * 26 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 1.8855 1.8825 1.3013 5 6 2.7184 1.4134 2.2664 6 6 3.6379 0.4167 1.9634 7 6 4.4899 -0.0597 2.9367 8 6 4.4227 0.4509 4.2320 9 6 5.3338 -0.0633 5.2820 10 6 6.0809 0.8152 6.0777 11 6 6.9233 0.3029 7.0496 12 7 7.0350 -0.9938 7.2386 13 6 6.3450 -1.8744 6.5071 14 6 6.4986 -3.2598 6.7467 15 1 6.0335 -3.9769 6.0863 16 6 7.2535 -3.7019 7.8400 17 7 7.4371 -4.9818 8.0330 18 14 7.9984 -2.4627 9.0229 19 1 8.7456 -3.1808 10.0864 20 1 8.9262 -1.5690 8.2840 21 1 6.9161 -1.6531 9.6380 22 6 5.4735 -1.4336 5.4982 23 6 3.4968 1.4545 4.5366 24 8 3.4295 1.9595 5.7956 25 6 2.4596 2.9816 6.0335 26 6 2.6489 1.9309 3.5512 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.4942 1.9329 -0.7267 31 1 3.0648 1.2336 -0.2660 32 1 3.6880 0.0169 0.9612 33 1 5.2065 -0.8312 2.6968 34 1 5.9999 1.8825 5.9344 35 1 7.4989 0.9801 7.6633 36 1 6.9896 -5.6273 7.4637 37 1 4.9183 -2.1433 4.9027 38 1 2.6641 3.8345 5.3863 39 1 1.4634 2.5940 5.8198 40 1 2.5114 3.2961 7.0758 41 1 1.9327 2.7053 3.7832 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244923866.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:54 Heat of formation + Delta-G solvation = -97.708170 kcal Electronic energy + Delta-G solvation = -25518.053976 eV Core-core repulsion = 21748.375696 eV Total energy + Delta-G solvation = -3769.678280 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.70125 -40.57257 -40.03640 -38.33542 -37.22040 -35.74849 -33.84388 -32.27928 -31.45185 -30.16570 -28.58118 -28.09588 -27.33668 -26.30729 -24.58946 -23.28043 -22.88089 -22.11230 -20.23962 -19.83108 -18.12092 -17.99094 -17.74124 -17.40346 -17.01118 -16.75472 -16.52697 -16.34496 -15.93749 -15.74103 -15.19170 -14.98189 -14.80723 -14.63808 -14.55300 -14.36729 -14.04538 -14.02173 -13.22418 -13.15780 -12.92172 -12.56456 -12.54158 -12.48323 -12.30739 -11.87115 -11.81057 -11.72854 -11.56390 -11.28713 -11.17656 -10.45481 -9.85250 -9.66556 -9.62476 -9.21707 -8.86035 -6.79748 0.03484 0.33584 0.72630 0.93318 1.63347 1.75375 2.05278 2.09191 2.41129 2.51611 2.57169 2.72444 2.84029 3.56531 3.72502 3.77035 3.98811 4.01288 4.04121 4.17497 4.20847 4.31192 4.39804 4.44926 4.47384 4.53243 4.61422 4.62640 4.67621 4.73938 4.77288 4.82912 4.90060 5.17389 5.27169 5.34944 5.37190 5.41520 5.53211 5.70325 5.83104 5.91468 6.04590 6.25628 6.38689 6.45958 6.68677 7.60567 7.98542 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018468 B = 0.003384 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.731359 B = 8271.927407 C = 9289.714333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.201 3.799 4 O -0.333 6.333 5 C 0.168 3.832 6 C -0.228 4.228 7 C -0.036 4.036 8 C -0.133 4.133 9 C 0.041 3.959 10 C -0.262 4.262 11 C 0.131 3.869 12 N -0.595 5.595 13 C 0.239 3.761 14 C -0.516 4.516 15 H 0.061 0.939 16 C 0.016 3.984 17 N -0.835 5.835 18 Si 1.191 2.809 19 H -0.332 1.332 20 H -0.276 1.276 21 H -0.296 1.296 22 C -0.264 4.264 23 C 0.174 3.826 24 O -0.321 6.321 25 C 0.015 3.985 26 C -0.243 4.243 27 H 0.091 0.909 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.140 0.860 31 H 0.115 0.885 32 H 0.151 0.849 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.164 0.836 36 H 0.278 0.722 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.116 0.884 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.963 17.932 -15.176 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.335 6.335 3 C 0.089 3.911 4 O -0.249 6.249 5 C 0.122 3.878 6 C -0.246 4.246 7 C -0.055 4.055 8 C -0.133 4.133 9 C 0.035 3.965 10 C -0.284 4.284 11 C -0.027 4.027 12 N -0.315 5.315 13 C 0.115 3.885 14 C -0.549 4.549 15 H 0.079 0.921 16 C -0.200 4.200 17 N -0.459 5.459 18 Si 1.024 2.976 19 H -0.265 1.265 20 H -0.204 1.204 21 H -0.225 1.225 22 C -0.286 4.286 23 C 0.128 3.872 24 O -0.234 6.234 25 C -0.079 4.079 26 C -0.262 4.262 27 H 0.110 0.890 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.132 0.868 32 H 0.169 0.831 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.182 0.818 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.134 0.866 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.456 17.540 -13.146 25.212 hybrid contribution -1.891 -0.497 -2.266 2.993 sum -14.347 17.042 -15.412 27.089 Atomic orbital electron populations 1.22975 0.79172 1.03810 1.01233 1.88060 1.22379 1.29472 1.93547 1.24693 1.01335 0.83541 0.81570 1.86195 1.56972 1.60615 1.21097 1.18677 0.88736 0.91933 0.88437 1.21209 0.99932 1.01980 1.01498 1.20936 0.97085 0.96929 0.90524 1.18237 1.00166 1.00571 0.94372 1.18777 0.92631 0.92188 0.92944 1.21528 1.04806 0.99518 1.02522 1.22680 0.94439 0.90950 0.94605 1.66434 1.28730 1.04377 1.31912 1.18668 0.87996 0.93011 0.88867 1.20708 1.30637 0.91585 1.11928 0.92098 1.28555 0.92723 0.99814 0.98902 1.70677 1.34144 1.02733 1.38313 0.81336 0.76244 0.69357 0.70705 1.26542 1.20379 1.22470 1.21746 1.06888 0.94908 1.05053 1.18664 0.92964 0.91460 0.84159 1.86222 1.57583 1.53824 1.25730 1.23405 0.90944 0.89149 1.04393 1.20433 1.06284 1.08367 0.91120 0.89026 0.94020 0.91289 0.84317 0.86783 0.83132 0.85183 0.85035 0.81844 0.91100 0.87964 0.90855 0.91784 0.86595 0.82460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.89 113.37 1.23 1.55 16 2 O -0.41 -7.50 10.18 -126.21 -1.28 -8.79 16 3 C 0.20 2.78 6.39 113.37 0.72 3.51 16 4 O -0.33 -6.67 10.19 -69.06 -0.70 -7.37 16 5 C 0.17 4.17 6.63 22.55 0.15 4.32 16 6 C -0.23 -5.95 8.76 22.35 0.20 -5.76 16 7 C -0.04 -1.16 9.53 22.46 0.21 -0.95 16 8 C -0.13 -4.80 5.53 -19.94 -0.11 -4.91 16 9 C 0.04 1.77 5.28 -19.88 -0.11 1.66 16 10 C -0.26 -10.72 8.91 22.77 0.20 -10.52 16 11 C 0.13 5.75 11.17 84.79 0.95 6.70 16 12 N -0.59 -31.01 4.54 -189.41 -0.86 -31.87 16 13 C 0.24 13.19 6.39 40.18 0.26 13.44 16 14 C -0.52 -30.46 9.58 23.49 0.23 -30.24 16 15 H 0.06 3.67 8.05 -2.91 -0.02 3.65 16 16 C 0.02 0.91 5.52 85.29 0.47 1.38 16 17 N -0.83 -48.81 13.65 21.84 0.30 -48.51 16 18 Si 1.19 60.53 25.56 68.60 1.75 62.28 16 19 H -0.33 -16.41 7.11 99.48 0.71 -15.70 16 20 H -0.28 -13.72 6.67 99.48 0.66 -13.05 16 21 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 22 C -0.26 -13.11 9.36 23.09 0.22 -12.90 16 23 C 0.17 5.46 6.61 22.73 0.15 5.61 16 24 O -0.32 -9.71 8.90 -91.43 -0.81 -10.52 16 25 C 0.02 0.28 9.81 113.37 1.11 1.39 16 26 C -0.24 -6.24 8.96 22.43 0.20 -6.04 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.04 0.60 8.03 -2.39 -0.02 0.58 16 29 H 0.07 0.55 8.11 -2.39 -0.02 0.53 16 30 H 0.14 0.93 8.01 -2.39 -0.02 0.92 16 31 H 0.11 1.33 6.69 -2.39 -0.02 1.31 16 32 H 0.15 3.29 5.83 -2.90 -0.02 3.27 16 33 H 0.13 4.12 8.05 -2.91 -0.02 4.10 16 34 H 0.13 4.68 7.75 -2.91 -0.02 4.66 16 35 H 0.16 5.82 8.06 -2.91 -0.02 5.80 16 36 H 0.28 15.78 8.72 -92.71 -0.81 14.98 16 37 H 0.10 4.98 8.06 -2.91 -0.02 4.95 16 38 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 39 H 0.06 1.05 7.66 -2.39 -0.02 1.03 16 40 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.16 3.17 6.29 -2.91 -0.02 3.15 16 Total: -1.00 -72.22 346.48 5.44 -66.77 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.97 Total: 9.74 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 6.08 Total: -31.73 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -0.56 Total: -80.38 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -2.80 Total: -26.69 kcal Atomic # 14 Polarization: 60.53 SS G_CDS: 1.75 Total: 62.28 kcal Total: -72.22 5.44 -66.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244923866.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.936 kcal (2) G-P(sol) polarization free energy of solvation -72.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds