Wall clock time and date at job start Tue Mar 31 2020 10:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35618 * 117.00070 * 2 1 4 4 C 1.38806 * 119.48835 * 179.97438 * 3 2 1 5 5 C 1.38727 * 119.19294 * 180.02562 * 4 3 2 6 6 O 1.35647 * 120.88206 * 180.02562 * 5 4 3 7 7 C 1.42910 * 116.99788 * 359.97090 * 6 5 4 8 8 C 1.40797 * 118.24087 * 359.97438 * 5 4 3 9 9 C 1.47850 * 120.54163 * 179.97438 * 8 5 4 10 10 C 1.40158 * 119.84415 * 310.01965 * 9 8 5 11 11 C 1.36080 * 120.38286 * 179.97438 * 10 9 8 12 12 C 1.40937 * 120.05928 * 359.68445 * 11 10 9 13 13 C 1.40813 * 120.14707 * 180.31861 * 12 11 10 14 14 H 1.08002 * 119.99458 * 205.10409 * 13 12 11 15 15 C 1.39945 * 120.00334 * 25.11199 * 13 12 11 16 16 N 1.30871 * 119.99956 * 17.69085 * 15 13 12 17 17 Si 1.86804 * 119.99765 * 197.69343 * 15 13 12 18 18 H 1.48494 * 109.47157 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46995 * 119.99946 * 17 15 13 20 20 H 1.48501 * 109.47133 * 239.99763 * 17 15 13 21 21 C 1.41514 * 119.69861 * 0.58943 * 12 11 10 22 22 O 1.35679 * 120.19353 * 179.70346 * 21 12 11 23 23 C 1.42898 * 117.00336 * 179.72894 * 22 21 12 24 24 C 1.37908 * 119.61882 * 359.43717 * 21 12 11 25 25 C 1.39348 * 118.92131 * 0.25680 * 8 5 4 26 26 N 1.31785 * 120.67370 * 359.47883 * 25 8 5 27 27 H 1.09001 * 109.46948 * 59.99607 * 1 2 3 28 28 H 1.08999 * 109.47315 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46803 * 299.99777 * 1 2 3 30 30 H 1.07990 * 120.40431 * 0.02562 * 4 3 2 31 31 H 1.09002 * 109.47126 * 179.97438 * 7 6 5 32 32 H 1.08991 * 109.46860 * 300.00361 * 7 6 5 33 33 H 1.09007 * 109.46639 * 60.00263 * 7 6 5 34 34 H 1.08002 * 119.81542 * 359.97438 * 10 9 8 35 35 H 1.08007 * 119.96770 * 179.97438 * 11 10 9 36 36 H 0.97005 * 119.99442 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.47437 * 180.02562 * 23 22 21 38 38 H 1.08995 * 109.47539 * 60.00145 * 23 22 21 39 39 H 1.08996 * 109.47028 * 300.00104 * 23 22 21 40 40 H 1.08004 * 120.03126 * 180.29586 * 24 21 12 41 41 H 1.07993 * 119.66851 * 179.74473 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 3.4315 1.2686 0.0005 5 6 4.0549 2.5079 0.0011 6 8 5.4078 2.6067 0.0011 7 6 6.1476 1.3840 0.0012 8 6 3.2463 3.6605 0.0005 9 6 3.8571 5.0069 0.0016 10 6 4.8562 5.3188 0.9339 11 6 5.4262 6.5543 0.9443 12 6 5.0184 7.5279 0.0105 13 6 5.6118 8.8049 0.0153 14 1 5.0717 9.6528 -0.3795 15 6 6.9013 8.9754 0.5316 16 7 7.6862 7.9398 0.6868 17 14 7.5021 10.6812 0.9993 18 1 6.4319 11.6744 0.7286 19 1 7.8472 10.7058 2.4434 20 1 8.7051 11.0195 0.1970 21 6 4.0058 7.2182 -0.9284 22 8 3.6013 8.1498 -1.8280 23 6 2.5789 7.7622 -2.7481 24 6 3.4364 5.9621 -0.9272 25 6 1.8607 3.5116 0.0049 26 7 1.3134 2.3128 -0.0008 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0179 0.3618 0.0005 31 1 7.2149 1.6051 0.0007 32 1 5.8959 0.8072 0.8911 33 1 5.8960 0.8071 -0.8889 34 1 5.1755 4.5742 1.6481 35 1 6.1953 6.7876 1.6660 36 1 8.5799 8.0580 1.0450 37 1 2.3500 8.5976 -3.4099 38 1 1.6823 7.4788 -2.1968 39 1 2.9248 6.9147 -3.3396 40 1 2.6665 5.7170 -1.6438 41 1 1.2290 4.3875 0.0087 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245614056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:26 Heat of formation + Delta-G solvation = -53.844234 kcal Electronic energy + Delta-G solvation = -25785.650711 eV Core-core repulsion = 22017.874513 eV Total energy + Delta-G solvation = -3767.776197 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.56567 -38.86245 -38.53377 -37.09756 -36.01378 -33.90924 -31.48808 -31.08169 -29.03076 -28.80126 -27.29684 -27.12181 -26.50141 -25.02146 -22.76746 -22.31831 -20.62792 -20.31066 -18.72299 -17.49992 -17.11638 -16.68870 -16.01596 -15.97624 -15.47214 -15.26262 -14.93019 -14.75844 -14.62120 -14.34950 -14.11595 -13.61895 -13.33569 -13.11910 -12.83358 -12.45584 -12.36443 -11.89865 -11.74360 -11.58876 -11.48143 -11.24819 -11.20353 -10.93471 -10.91711 -10.74008 -10.49747 -10.00493 -9.81593 -9.61824 -9.31977 -9.23257 -8.72737 -8.16644 -7.30588 -6.99916 -6.73945 -4.24699 1.37623 1.62640 2.70668 3.04756 3.07322 3.13073 3.14820 3.17181 3.49883 3.91852 4.08142 4.50053 4.60167 4.60711 5.06482 5.14812 5.23860 5.23931 5.32572 5.38055 5.46530 5.57517 5.60789 5.66385 5.75229 5.81723 5.85197 5.98912 6.10887 6.14065 6.32697 6.48140 6.61446 6.91697 7.03965 7.25682 7.34243 7.36107 7.53787 7.71584 7.74886 8.06220 8.16617 8.20187 8.40843 8.66278 8.79288 9.05666 10.12308 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.003651 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.151167 B = 7666.534426 C = 8709.379875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.314 6.314 3 C 0.323 3.677 4 C -0.279 4.279 5 C 0.191 3.809 6 O -0.284 6.284 7 C 0.023 3.977 8 C -0.096 4.096 9 C -0.157 4.157 10 C -0.080 4.080 11 C -0.155 4.155 12 C 0.108 3.892 13 C -0.434 4.434 14 H 0.085 0.915 15 C 0.072 3.928 16 N -0.785 5.785 17 Si 0.910 3.090 18 H -0.259 1.259 19 H -0.272 1.272 20 H -0.274 1.274 21 C 0.006 3.994 22 O -0.313 6.313 23 C 0.035 3.965 24 C -0.151 4.151 25 C 0.153 3.847 26 N -0.558 5.558 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.138 0.862 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.281 0.719 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.097 0.903 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 -10.494 -1.026 12.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.222 6.222 3 C 0.145 3.855 4 C -0.301 4.301 5 C 0.137 3.863 6 O -0.194 6.194 7 C -0.072 4.072 8 C -0.100 4.100 9 C -0.160 4.160 10 C -0.099 4.099 11 C -0.175 4.175 12 C 0.105 3.895 13 C -0.463 4.463 14 H 0.103 0.897 15 C -0.147 4.147 16 N -0.409 5.409 17 Si 0.734 3.266 18 H -0.182 1.182 19 H -0.197 1.197 20 H -0.200 1.200 21 C -0.038 4.038 22 O -0.228 6.228 23 C -0.061 4.061 24 C -0.171 4.171 25 C -0.001 4.001 26 N -0.285 5.285 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.141 0.859 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.115 0.885 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.551 -10.532 -0.985 12.442 hybrid contribution 0.891 0.196 0.019 0.913 sum -5.659 -10.336 -0.966 11.824 Atomic orbital electron populations 1.22762 0.77737 1.02249 1.02429 1.86150 1.22504 1.25129 1.88426 1.19336 0.88381 0.84562 0.93241 1.20817 0.93100 0.97911 1.18233 1.19189 0.83357 0.92185 0.91597 1.86291 1.14120 1.31910 1.87035 1.23121 0.96852 0.86162 1.01096 1.19266 0.92344 0.92659 1.05686 1.17353 1.04437 0.90736 1.03433 1.20314 0.95573 0.96310 0.97686 1.20721 1.03062 0.93136 1.00533 1.17125 0.89542 0.94080 0.88765 1.19529 0.98677 0.95052 1.33031 0.89683 1.25976 0.96569 0.98918 0.93208 1.69866 1.07425 1.31894 1.31759 0.86226 0.79208 0.82283 0.78876 1.18225 1.19666 1.19972 1.18991 1.02417 0.88077 0.94299 1.85966 1.53826 1.38611 1.44353 1.22720 0.90589 1.00441 0.92367 1.20554 1.02197 0.93396 1.00907 1.22424 0.91310 0.93007 0.93386 1.67203 1.40517 0.98625 1.22136 0.92500 0.89184 0.92453 0.84403 0.87984 0.92714 0.92764 0.89287 0.85858 0.90775 0.90082 0.94208 0.94230 0.88533 0.82021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.37 101.05 1.05 1.52 16 2 O -0.31 -4.51 10.47 -18.55 -0.19 -4.70 16 3 C 0.32 5.25 7.49 -17.07 -0.13 5.13 16 4 C -0.28 -4.42 9.03 -39.19 -0.35 -4.77 16 5 C 0.19 3.41 6.63 -38.43 -0.25 3.16 16 6 O -0.28 -5.02 9.01 -18.64 -0.17 -5.19 16 7 C 0.02 0.28 9.84 101.05 0.99 1.27 16 8 C -0.10 -1.85 5.48 -104.58 -0.57 -2.43 16 9 C -0.16 -3.46 5.34 -104.69 -0.56 -4.02 16 10 C -0.08 -1.87 8.75 -39.64 -0.35 -2.22 16 11 C -0.15 -3.95 8.61 -39.34 -0.34 -4.29 16 12 C 0.11 2.85 5.58 -106.65 -0.60 2.26 16 13 C -0.43 -11.48 8.70 -37.97 -0.33 -11.81 16 14 H 0.09 2.24 7.64 -52.49 -0.40 1.84 16 15 C 0.07 1.77 5.13 -17.32 -0.09 1.68 16 16 N -0.78 -19.82 10.97 55.55 0.61 -19.22 16 17 Si 0.91 18.45 29.60 -169.99 -5.03 13.42 16 18 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 C 0.01 0.15 6.71 -38.45 -0.26 -0.11 16 22 O -0.31 -7.17 9.77 -18.74 -0.18 -7.36 16 23 C 0.04 0.60 9.81 101.05 0.99 1.59 16 24 C -0.15 -3.36 8.49 -39.15 -0.33 -3.69 16 25 C 0.15 2.65 10.68 -17.16 -0.18 2.46 16 26 N -0.56 -9.36 9.18 -13.04 -0.12 -9.48 16 27 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 30 H 0.14 1.83 6.45 -52.49 -0.34 1.49 16 31 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.58 7.71 -51.93 -0.40 0.18 16 33 H 0.05 0.58 7.71 -51.93 -0.40 0.18 16 34 H 0.09 1.97 7.72 -52.49 -0.41 1.56 16 35 H 0.12 3.22 6.18 -52.48 -0.32 2.90 16 36 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 39 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 40 H 0.10 1.90 6.28 -52.48 -0.33 1.57 16 41 H 0.16 2.54 8.04 -52.49 -0.42 2.12 16 LS Contribution 348.91 15.07 5.26 5.26 Total: -1.00 -29.81 348.91 -6.20 -36.01 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.06 Total: 5.53 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -1.31 Total: -14.27 kcal Atomic # 7 Polarization: -29.19 SS G_CDS: 0.49 Total: -28.70 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.55 Total: -17.25 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.81 -6.20 -36.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245614056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.836 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds