Wall clock time and date at job start Tue Mar 31 2020 10:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35618 * 117.00070 * 2 1 4 4 C 1.38806 * 119.48835 * 179.97438 * 3 2 1 5 5 C 1.38727 * 119.19294 * 180.02562 * 4 3 2 6 6 O 1.35647 * 120.88206 * 180.02562 * 5 4 3 7 7 C 1.42910 * 116.99788 * 359.97090 * 6 5 4 8 8 C 1.40797 * 118.24087 * 359.97438 * 5 4 3 9 9 C 1.47850 * 120.54163 * 179.97438 * 8 5 4 10 10 C 1.40158 * 119.84415 * 310.01965 * 9 8 5 11 11 C 1.36080 * 120.38286 * 179.97438 * 10 9 8 12 12 C 1.40937 * 120.05928 * 359.68445 * 11 10 9 13 13 C 1.40813 * 120.14707 * 180.31861 * 12 11 10 14 14 H 1.08002 * 119.99458 * 205.10409 * 13 12 11 15 15 C 1.39945 * 120.00334 * 25.11199 * 13 12 11 16 16 N 1.30871 * 119.99956 * 17.69085 * 15 13 12 17 17 Si 1.86804 * 119.99765 * 197.69343 * 15 13 12 18 18 H 1.48494 * 109.47157 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46995 * 119.99946 * 17 15 13 20 20 H 1.48501 * 109.47133 * 239.99763 * 17 15 13 21 21 C 1.41514 * 119.69861 * 0.58943 * 12 11 10 22 22 O 1.35679 * 120.19353 * 179.70346 * 21 12 11 23 23 C 1.42898 * 117.00336 * 179.72894 * 22 21 12 24 24 C 1.37908 * 119.61882 * 359.43717 * 21 12 11 25 25 C 1.39348 * 118.92131 * 0.25680 * 8 5 4 26 26 N 1.31785 * 120.67370 * 359.47883 * 25 8 5 27 27 H 1.09001 * 109.46948 * 59.99607 * 1 2 3 28 28 H 1.08999 * 109.47315 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46803 * 299.99777 * 1 2 3 30 30 H 1.07990 * 120.40431 * 0.02562 * 4 3 2 31 31 H 1.09002 * 109.47126 * 179.97438 * 7 6 5 32 32 H 1.08991 * 109.46860 * 300.00361 * 7 6 5 33 33 H 1.09007 * 109.46639 * 60.00263 * 7 6 5 34 34 H 1.08002 * 119.81542 * 359.97438 * 10 9 8 35 35 H 1.08007 * 119.96770 * 179.97438 * 11 10 9 36 36 H 0.97005 * 119.99442 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.47437 * 180.02562 * 23 22 21 38 38 H 1.08995 * 109.47539 * 60.00145 * 23 22 21 39 39 H 1.08996 * 109.47028 * 300.00104 * 23 22 21 40 40 H 1.08004 * 120.03126 * 180.29586 * 24 21 12 41 41 H 1.07993 * 119.66851 * 179.74473 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 3.4315 1.2686 0.0005 5 6 4.0549 2.5079 0.0011 6 8 5.4078 2.6067 0.0011 7 6 6.1476 1.3840 0.0012 8 6 3.2463 3.6605 0.0005 9 6 3.8571 5.0069 0.0016 10 6 4.8562 5.3188 0.9339 11 6 5.4262 6.5543 0.9443 12 6 5.0184 7.5279 0.0105 13 6 5.6118 8.8049 0.0153 14 1 5.0717 9.6528 -0.3795 15 6 6.9013 8.9754 0.5316 16 7 7.6862 7.9398 0.6868 17 14 7.5021 10.6812 0.9993 18 1 6.4319 11.6744 0.7286 19 1 7.8472 10.7058 2.4434 20 1 8.7051 11.0195 0.1970 21 6 4.0058 7.2182 -0.9284 22 8 3.6013 8.1498 -1.8280 23 6 2.5789 7.7622 -2.7481 24 6 3.4364 5.9621 -0.9272 25 6 1.8607 3.5116 0.0049 26 7 1.3134 2.3128 -0.0008 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0179 0.3618 0.0005 31 1 7.2149 1.6051 0.0007 32 1 5.8959 0.8072 0.8911 33 1 5.8960 0.8071 -0.8889 34 1 5.1755 4.5742 1.6481 35 1 6.1953 6.7876 1.6660 36 1 8.5799 8.0580 1.0450 37 1 2.3500 8.5976 -3.4099 38 1 1.6823 7.4788 -2.1968 39 1 2.9248 6.9147 -3.3396 40 1 2.6665 5.7170 -1.6438 41 1 1.2290 4.3875 0.0087 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245614056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:25 Heat of formation + Delta-G solvation = -72.994362 kcal Electronic energy + Delta-G solvation = -25786.481123 eV Core-core repulsion = 22017.874513 eV Total energy + Delta-G solvation = -3768.606609 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.86306 -40.38257 -39.93845 -38.39142 -37.70206 -35.67917 -33.05811 -32.38168 -30.68583 -30.49148 -28.41970 -28.16646 -27.97974 -26.66600 -24.22503 -23.62670 -22.37686 -22.00516 -19.91240 -19.31825 -18.46513 -18.24728 -17.27239 -17.23485 -16.98434 -16.52695 -16.44542 -16.19184 -16.00857 -15.84540 -15.70545 -14.97795 -14.64368 -14.49082 -14.32737 -14.02737 -13.88349 -13.36883 -13.11828 -12.82609 -12.79251 -12.72841 -12.55929 -12.48535 -12.30181 -12.08393 -12.00509 -11.63368 -11.59368 -11.32288 -11.04886 -10.71498 -9.97857 -9.71009 -9.02992 -8.80099 -8.53911 -6.16171 0.01821 0.28636 0.99389 1.18842 1.40170 1.51592 1.55718 2.02276 2.23993 2.35040 2.64649 2.82882 2.96069 3.35952 3.67449 3.82073 4.06849 4.11049 4.30153 4.36005 4.38695 4.46140 4.48125 4.48821 4.51532 4.52225 4.63817 4.68828 4.76837 4.77869 4.81345 4.87102 5.16279 5.17543 5.29866 5.46331 5.49852 5.84035 5.90250 6.16853 6.20754 6.30622 6.37366 6.54202 6.80957 6.86769 6.92061 7.26333 8.34863 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.003651 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.151167 B = 7666.534426 C = 8709.379875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.316 6.316 3 C 0.328 3.672 4 C -0.277 4.277 5 C 0.191 3.809 6 O -0.315 6.315 7 C 0.013 3.987 8 C -0.134 4.134 9 C -0.135 4.135 10 C -0.091 4.091 11 C -0.168 4.168 12 C 0.069 3.931 13 C -0.475 4.475 14 H 0.072 0.928 15 C 0.034 3.966 16 N -0.820 5.820 17 Si 0.981 3.019 18 H -0.261 1.261 19 H -0.262 1.262 20 H -0.266 1.266 21 C -0.003 4.003 22 O -0.339 6.339 23 C 0.026 3.974 24 C -0.155 4.155 25 C 0.166 3.834 26 N -0.563 5.563 27 H 0.056 0.944 28 H 0.126 0.874 29 H 0.055 0.945 30 H 0.165 0.835 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.289 0.711 37 H 0.111 0.889 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.124 0.876 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.574 -12.517 -1.492 14.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.223 6.223 3 C 0.149 3.851 4 C -0.298 4.298 5 C 0.137 3.863 6 O -0.225 6.225 7 C -0.081 4.081 8 C -0.138 4.138 9 C -0.137 4.137 10 C -0.110 4.110 11 C -0.188 4.188 12 C 0.067 3.933 13 C -0.504 4.504 14 H 0.090 0.910 15 C -0.181 4.181 16 N -0.446 5.446 17 Si 0.802 3.198 18 H -0.185 1.185 19 H -0.186 1.186 20 H -0.191 1.191 21 C -0.047 4.047 22 O -0.254 6.254 23 C -0.069 4.069 24 C -0.174 4.174 25 C 0.012 3.988 26 N -0.290 5.290 27 H 0.075 0.925 28 H 0.144 0.856 29 H 0.074 0.926 30 H 0.183 0.817 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.142 0.858 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.898 -12.598 -1.462 14.941 hybrid contribution 1.091 0.472 0.084 1.192 sum -6.807 -12.126 -1.378 13.974 Atomic orbital electron populations 1.23071 0.75724 1.04655 1.02321 1.86169 1.24454 1.23898 1.87787 1.19636 0.88829 0.85061 0.91568 1.21004 0.93266 0.98075 1.17462 1.19259 0.83625 0.92464 0.90923 1.86252 1.14284 1.35093 1.86886 1.23458 0.96980 0.84843 1.02810 1.19213 0.93449 0.91698 1.09427 1.17634 1.02583 0.92019 1.01458 1.20416 0.96361 0.95666 0.98541 1.20654 1.03416 0.94119 1.00610 1.17459 0.91156 0.94682 0.90044 1.19586 0.99981 0.94930 1.35918 0.91009 1.26741 0.96040 1.02811 0.92532 1.69904 1.07999 1.33850 1.32843 0.85175 0.78519 0.77206 0.78917 1.18452 1.18609 1.19065 1.19166 1.02154 0.89094 0.94283 1.85916 1.55530 1.39120 1.44876 1.23069 0.89671 1.02179 0.91938 1.20824 1.02638 0.92562 1.01378 1.22565 0.90646 0.93828 0.91808 1.67291 1.40433 0.98537 1.22709 0.92541 0.85641 0.92589 0.81737 0.86771 0.90870 0.91018 0.88604 0.87528 0.90072 0.87067 0.92644 0.93594 0.85846 0.80712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.37 113.37 1.18 1.85 16 2 O -0.32 -7.96 10.47 -89.29 -0.93 -8.89 16 3 C 0.33 9.68 7.49 84.73 0.63 10.32 16 4 C -0.28 -7.99 9.03 22.52 0.20 -7.78 16 5 C 0.19 6.54 6.63 23.01 0.15 6.70 16 6 O -0.31 -10.81 9.01 -89.61 -0.81 -11.62 16 7 C 0.01 0.29 9.84 113.37 1.12 1.40 16 8 C -0.13 -5.02 5.48 -19.84 -0.11 -5.13 16 9 C -0.13 -5.95 5.34 -19.91 -0.11 -6.05 16 10 C -0.09 -4.39 8.75 22.23 0.19 -4.20 16 11 C -0.17 -9.04 8.61 22.43 0.19 -8.85 16 12 C 0.07 3.85 5.58 -21.18 -0.12 3.73 16 13 C -0.48 -26.56 8.70 23.31 0.20 -26.36 16 14 H 0.07 4.02 7.64 -2.91 -0.02 4.00 16 15 C 0.03 1.73 5.13 85.25 0.44 2.17 16 16 N -0.82 -43.36 10.97 21.83 0.24 -43.12 16 17 Si 0.98 39.14 29.60 68.60 2.03 41.17 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 19 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 20 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 21 C 0.00 -0.13 6.71 23.00 0.15 0.02 16 22 O -0.34 -15.81 9.77 -89.97 -0.88 -16.69 16 23 C 0.03 0.86 9.81 113.37 1.11 1.98 16 24 C -0.16 -6.87 8.49 22.55 0.19 -6.68 16 25 C 0.17 5.43 10.68 84.97 0.91 6.34 16 26 N -0.56 -17.44 9.18 -307.95 -2.83 -20.26 16 27 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 28 H 0.13 1.40 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.05 8.10 -2.39 -0.02 1.04 16 30 H 0.17 3.76 6.45 -2.92 -0.02 3.74 16 31 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 1.34 7.71 -2.39 -0.02 1.32 16 33 H 0.07 1.33 7.71 -2.38 -0.02 1.31 16 34 H 0.10 4.36 7.72 -2.91 -0.02 4.34 16 35 H 0.11 5.95 6.18 -2.91 -0.02 5.94 16 36 H 0.29 13.69 8.30 -92.70 -0.77 12.92 16 37 H 0.11 2.91 8.14 -2.38 -0.02 2.89 16 38 H 0.05 1.62 7.66 -2.39 -0.02 1.61 16 39 H 0.05 1.43 7.66 -2.39 -0.02 1.41 16 40 H 0.12 4.68 6.28 -2.91 -0.02 4.66 16 41 H 0.18 5.12 8.04 -2.91 -0.02 5.10 16 Total: -1.00 -67.53 348.91 4.22 -63.31 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 1.06 Total: 26.65 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 6.34 Total: -30.54 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -2.59 Total: -63.39 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -2.62 Total: -37.20 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -67.53 4.22 -63.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245614056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.684 kcal (2) G-P(sol) polarization free energy of solvation -67.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds