Wall clock time and date at job start Tue Mar 31 2020 11:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00182 * 2 1 4 4 O 1.20828 * 119.99760 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00389 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47205 * 185.30202 * 5 3 2 7 7 C 1.53004 * 110.01382 * 294.16627 * 6 5 3 8 8 N 1.46495 * 109.47164 * 304.79977 * 7 6 5 9 9 C 1.34778 * 120.00164 * 174.33616 * 8 7 6 10 10 O 1.21283 * 119.99501 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.00190 * 180.02562 * 9 8 7 12 12 S 1.81005 * 109.46921 * 180.02562 * 11 9 8 13 13 C 1.76207 * 99.99929 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99930 * 359.97438 * 13 12 11 15 15 C 1.38801 * 119.99552 * 180.02562 * 13 12 11 16 16 N 1.31618 * 120.00615 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99394 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46970 * 59.99715 * 17 15 13 19 19 H 1.48502 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47300 * 300.00073 * 17 15 13 21 21 C 1.54267 * 110.03319 * 172.72440 * 6 5 3 22 22 C 1.54885 * 104.19777 * 264.32396 * 21 6 5 23 23 C 1.54890 * 102.74885 * 322.06031 * 22 21 6 24 24 C 1.53871 * 110.03322 * 55.55688 * 6 5 3 25 25 H 1.09004 * 109.47032 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47710 * 300.00335 * 1 2 3 27 27 H 1.09004 * 109.47110 * 60.00551 * 1 2 3 28 28 H 1.09003 * 109.46852 * 65.30043 * 5 3 2 29 29 H 1.09000 * 109.46829 * 305.30192 * 5 3 2 30 30 H 1.08993 * 109.47280 * 64.80682 * 7 6 5 31 31 H 1.09001 * 109.46912 * 184.80605 * 7 6 5 32 32 H 0.97002 * 120.00259 * 354.34254 * 8 7 6 33 33 H 1.08996 * 109.47246 * 299.99840 * 11 9 8 34 34 H 1.08995 * 109.47399 * 60.00536 * 11 9 8 35 35 H 0.96995 * 120.00748 * 179.97438 * 16 15 13 36 36 H 1.09002 * 110.48883 * 145.64290 * 21 6 5 37 37 H 1.09008 * 110.48617 * 23.00253 * 21 6 5 38 38 H 1.08994 * 110.75863 * 203.74022 * 22 21 6 39 39 H 1.09000 * 110.75422 * 80.37332 * 22 21 6 40 40 H 1.09000 * 110.48822 * 156.62131 * 23 22 21 41 41 H 1.09006 * 110.48029 * 279.12956 * 23 22 21 42 42 H 1.09001 * 110.03267 * 0.02562 * 24 6 5 43 43 H 1.09002 * 110.03641 * 238.56636 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0003 2.7360 0.1338 7 6 3.5787 3.5228 -1.1089 8 7 4.1172 2.8714 -2.3054 9 6 3.7790 3.3239 -3.5291 10 8 3.0292 4.2708 -3.6395 11 6 4.3325 2.6534 -4.7599 12 16 3.6983 3.4854 -6.2370 13 6 4.4826 2.5256 -7.4894 14 1 5.1295 1.7053 -7.2154 15 6 4.2699 2.8246 -8.8280 16 7 3.4820 3.8246 -9.1620 17 14 5.1020 1.8075 -10.1557 18 1 4.6769 0.3899 -10.0325 19 1 4.7143 2.3258 -11.4922 20 1 6.5758 1.8977 -9.9977 21 6 5.5296 2.8182 0.3189 22 6 5.7225 2.9034 1.8533 23 6 4.5400 3.7999 2.2972 24 6 3.3711 3.3602 1.3916 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.9519 0.8649 -0.9329 29 1 3.9598 0.7010 0.8396 30 1 2.4908 3.5513 -1.1691 31 1 3.9657 4.5397 -1.0436 32 1 4.7171 2.1142 -2.2170 33 1 5.4207 2.7138 -4.7484 34 1 4.0267 1.6072 -4.7724 35 1 3.3337 4.0337 -10.0974 36 1 5.9251 3.7110 -0.1655 37 1 6.0105 1.9235 -0.0770 38 1 6.6757 3.3723 2.0974 39 1 5.6496 1.9151 2.3072 40 1 4.2987 3.6219 3.3451 41 1 4.7767 4.8515 2.1345 42 1 2.7569 2.6221 1.9074 43 1 2.7661 4.2243 1.1169 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336694348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:43 Heat of formation + Delta-G solvation = -140.018842 kcal Electronic energy + Delta-G solvation = -24489.954945 eV Core-core repulsion = 20853.885888 eV Total energy + Delta-G solvation = -3636.069057 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16771 -39.49348 -38.42135 -36.53030 -34.36245 -32.41383 -31.84183 -29.73080 -29.05474 -28.34357 -26.79278 -25.48240 -24.26392 -21.59592 -21.21723 -20.09873 -19.11613 -17.86258 -17.75528 -16.96534 -16.68743 -16.28688 -15.85518 -15.44715 -15.12577 -14.79277 -14.74622 -14.15567 -13.88691 -13.88300 -13.66926 -13.23657 -12.96229 -12.76360 -12.55821 -12.40159 -12.19251 -11.70820 -11.50356 -11.37859 -11.24762 -11.13315 -11.02956 -11.02630 -10.97520 -10.84959 -10.77994 -10.72011 -10.37688 -9.80258 -9.33107 -9.04610 -8.76182 -8.21038 -6.47681 -6.19639 -3.90162 2.03777 2.49835 3.08169 3.17292 3.24449 3.28724 3.33350 3.76426 4.11408 4.22087 4.22789 4.29776 4.66211 4.79511 4.84352 4.90141 4.94197 5.00363 5.12409 5.15223 5.18976 5.21090 5.31496 5.33591 5.39450 5.48790 5.55335 5.65483 5.68240 5.81013 5.82424 5.91407 5.96830 5.98459 6.06319 6.11727 6.15723 6.32773 6.69105 7.57481 7.60704 7.76153 8.36641 8.68722 9.25279 10.87742 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016898 B = 0.003019 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.595187 B = 9272.993321 C =10041.362273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.459 3.541 4 O -0.493 6.493 5 C -0.105 4.105 6 C -0.060 4.060 7 C 0.123 3.877 8 N -0.740 5.740 9 C 0.530 3.470 10 O -0.515 6.515 11 C -0.153 4.153 12 S -0.060 6.060 13 C -0.536 4.536 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.868 5.868 17 Si 0.918 3.082 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.128 4.128 24 C -0.103 4.103 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.393 0.607 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.269 0.731 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.174 -7.922 25.254 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.301 3.699 4 O -0.379 6.379 5 C -0.142 4.142 6 C -0.061 4.061 7 C 0.000 4.000 8 N -0.395 5.395 9 C 0.316 3.684 10 O -0.389 6.389 11 C -0.304 4.304 12 S 0.167 5.833 13 C -0.685 4.685 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.155 4.155 22 C -0.162 4.162 23 C -0.165 4.165 24 C -0.141 4.141 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.227 0.773 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.578 -5.914 24.915 25.614 hybrid contribution 1.436 -2.145 -0.745 2.687 sum 2.014 -8.059 24.170 25.558 Atomic orbital electron populations 1.23265 0.76186 1.03643 1.02725 1.86489 1.23607 1.33656 1.84247 1.23699 0.92149 0.81434 0.72569 1.90677 1.67120 1.35901 1.44250 1.21587 0.87976 0.98918 1.05740 1.21320 0.96084 0.92438 0.96216 1.21652 1.00897 0.95523 0.81955 1.46079 1.51513 1.36303 1.05634 1.20284 0.80631 0.83686 0.83822 1.90709 1.34742 1.27199 1.86289 1.23530 1.04187 1.03972 0.98706 1.85424 1.63017 1.42958 0.91922 1.22835 1.33821 1.19152 0.92660 0.91000 1.24987 0.95178 0.95456 0.97933 1.70002 1.34854 1.27160 1.18281 0.86231 0.79584 0.79936 0.79781 1.19955 1.20821 1.19933 1.22528 0.93311 1.02898 0.96722 1.22499 0.98474 0.99905 0.95317 1.22422 0.95126 0.99873 0.99115 1.22146 0.97228 1.01140 0.93581 0.88187 0.91983 0.91588 0.87523 0.87465 0.89274 0.91666 0.77257 0.89266 0.89404 0.92133 0.90298 0.91058 0.91383 0.91523 0.91750 0.91411 0.91869 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -3.80 10.56 -39.25 -0.41 -4.21 16 3 C 0.46 5.08 6.98 36.00 0.25 5.33 16 4 O -0.49 -6.76 12.27 -18.75 -0.23 -6.99 16 5 C -0.10 -0.85 4.52 -27.88 -0.13 -0.97 16 6 C -0.06 -0.53 0.36 -153.39 -0.06 -0.59 16 7 C 0.12 1.59 3.96 -4.04 -0.02 1.57 16 8 N -0.74 -10.13 4.97 -60.30 -0.30 -10.43 16 9 C 0.53 10.22 7.85 -10.99 -0.09 10.13 16 10 O -0.52 -12.26 15.85 5.55 0.09 -12.17 16 11 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 12 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 13 C -0.54 -15.42 9.50 30.94 0.29 -15.13 16 14 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 15 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 16 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 17 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 C -0.12 -0.83 5.47 -25.07 -0.14 -0.97 16 22 C -0.12 -0.77 6.91 -24.74 -0.17 -0.94 16 23 C -0.13 -0.90 6.83 -25.07 -0.17 -1.07 16 24 C -0.10 -0.91 4.69 -25.61 -0.12 -1.03 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 27 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.11 0.78 6.58 -51.93 -0.34 0.44 16 29 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.42 5.97 -51.93 -0.31 1.11 16 31 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 32 H 0.39 4.08 6.96 -40.82 -0.28 3.79 16 33 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 34 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 35 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.08 0.64 7.79 -51.93 -0.40 0.24 16 37 H 0.07 0.41 7.84 -51.92 -0.41 0.01 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.57 6.69 -51.93 -0.35 0.22 16 43 H 0.08 0.79 7.67 -51.93 -0.40 0.39 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -36.15 362.66 -7.72 -43.87 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.68 Total: 0.73 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 0.85 Total: -3.20 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.43 Total: -36.12 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.56 Total: -23.37 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.15 -7.72 -43.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336694348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.144 kcal (2) G-P(sol) polarization free energy of solvation -36.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds