Wall clock time and date at job start Tue Mar 31 2020 11:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00182 * 2 1 4 4 O 1.20828 * 119.99760 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00389 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47205 * 185.30202 * 5 3 2 7 7 C 1.53004 * 110.01382 * 294.16627 * 6 5 3 8 8 N 1.46495 * 109.47164 * 304.79977 * 7 6 5 9 9 C 1.34778 * 120.00164 * 174.33616 * 8 7 6 10 10 O 1.21283 * 119.99501 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.00190 * 180.02562 * 9 8 7 12 12 S 1.81005 * 109.46921 * 180.02562 * 11 9 8 13 13 C 1.76207 * 99.99929 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99930 * 359.97438 * 13 12 11 15 15 C 1.38801 * 119.99552 * 180.02562 * 13 12 11 16 16 N 1.31618 * 120.00615 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99394 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46970 * 59.99715 * 17 15 13 19 19 H 1.48502 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47300 * 300.00073 * 17 15 13 21 21 C 1.54267 * 110.03319 * 172.72440 * 6 5 3 22 22 C 1.54885 * 104.19777 * 264.32396 * 21 6 5 23 23 C 1.54890 * 102.74885 * 322.06031 * 22 21 6 24 24 C 1.53871 * 110.03322 * 55.55688 * 6 5 3 25 25 H 1.09004 * 109.47032 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47710 * 300.00335 * 1 2 3 27 27 H 1.09004 * 109.47110 * 60.00551 * 1 2 3 28 28 H 1.09003 * 109.46852 * 65.30043 * 5 3 2 29 29 H 1.09000 * 109.46829 * 305.30192 * 5 3 2 30 30 H 1.08993 * 109.47280 * 64.80682 * 7 6 5 31 31 H 1.09001 * 109.46912 * 184.80605 * 7 6 5 32 32 H 0.97002 * 120.00259 * 354.34254 * 8 7 6 33 33 H 1.08996 * 109.47246 * 299.99840 * 11 9 8 34 34 H 1.08995 * 109.47399 * 60.00536 * 11 9 8 35 35 H 0.96995 * 120.00748 * 179.97438 * 16 15 13 36 36 H 1.09002 * 110.48883 * 145.64290 * 21 6 5 37 37 H 1.09008 * 110.48617 * 23.00253 * 21 6 5 38 38 H 1.08994 * 110.75863 * 203.74022 * 22 21 6 39 39 H 1.09000 * 110.75422 * 80.37332 * 22 21 6 40 40 H 1.09000 * 110.48822 * 156.62131 * 23 22 21 41 41 H 1.09006 * 110.48029 * 279.12956 * 23 22 21 42 42 H 1.09001 * 110.03267 * 0.02562 * 24 6 5 43 43 H 1.09002 * 110.03641 * 238.56636 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0003 2.7360 0.1338 7 6 3.5787 3.5228 -1.1089 8 7 4.1172 2.8714 -2.3054 9 6 3.7790 3.3239 -3.5291 10 8 3.0292 4.2708 -3.6395 11 6 4.3325 2.6534 -4.7599 12 16 3.6983 3.4854 -6.2370 13 6 4.4826 2.5256 -7.4894 14 1 5.1295 1.7053 -7.2154 15 6 4.2699 2.8246 -8.8280 16 7 3.4820 3.8246 -9.1620 17 14 5.1020 1.8075 -10.1557 18 1 4.6769 0.3899 -10.0325 19 1 4.7143 2.3258 -11.4922 20 1 6.5758 1.8977 -9.9977 21 6 5.5296 2.8182 0.3189 22 6 5.7225 2.9034 1.8533 23 6 4.5400 3.7999 2.2972 24 6 3.3711 3.3602 1.3916 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.9519 0.8649 -0.9329 29 1 3.9598 0.7010 0.8396 30 1 2.4908 3.5513 -1.1691 31 1 3.9657 4.5397 -1.0436 32 1 4.7171 2.1142 -2.2170 33 1 5.4207 2.7138 -4.7484 34 1 4.0267 1.6072 -4.7724 35 1 3.3337 4.0337 -10.0974 36 1 5.9251 3.7110 -0.1655 37 1 6.0105 1.9235 -0.0770 38 1 6.6757 3.3723 2.0974 39 1 5.6496 1.9151 2.3072 40 1 4.2987 3.6219 3.3451 41 1 4.7767 4.8515 2.1345 42 1 2.7569 2.6221 1.9074 43 1 2.7661 4.2243 1.1169 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336694348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:42 Heat of formation + Delta-G solvation = -164.345916 kcal Electronic energy + Delta-G solvation = -24491.009846 eV Core-core repulsion = 20853.885888 eV Total energy + Delta-G solvation = -3637.123958 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.02472 -40.66783 -39.51929 -37.38111 -35.59823 -34.58332 -32.74769 -31.10738 -29.67641 -29.27485 -27.78255 -27.48776 -25.21112 -22.43065 -22.07309 -21.26260 -20.10279 -19.61817 -18.59296 -18.00455 -17.76107 -17.49114 -16.90939 -16.87024 -16.65381 -16.10273 -15.81872 -15.55444 -14.96675 -14.91136 -14.58023 -14.43891 -14.31275 -13.89204 -13.75468 -13.36310 -13.16891 -13.06551 -12.86301 -12.79327 -12.63822 -12.22759 -12.00613 -11.88809 -11.81489 -11.73182 -11.71890 -11.56022 -11.36140 -11.25172 -11.12442 -10.94931 -10.27504 -10.08743 -8.67508 -8.33988 -6.12928 1.20424 1.26855 1.44716 1.47251 1.56946 1.61063 1.77958 2.26563 2.29958 3.00055 3.32173 3.41485 3.50039 3.60826 3.96646 3.98724 4.11994 4.24693 4.28002 4.28985 4.31701 4.32499 4.45458 4.49494 4.58292 4.65248 4.68708 4.73743 4.83938 4.85973 4.99143 5.08429 5.14327 5.28935 5.30645 5.36257 5.41753 5.45341 5.50202 5.54139 6.19959 6.49365 6.75310 7.06820 7.24755 8.75126 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016898 B = 0.003019 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.595187 B = 9272.993321 C =10041.362273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.452 3.548 4 O -0.529 6.529 5 C -0.103 4.103 6 C -0.051 4.051 7 C 0.127 3.873 8 N -0.709 5.709 9 C 0.530 3.470 10 O -0.569 6.569 11 C -0.127 4.127 12 S -0.157 6.157 13 C -0.546 4.546 14 H 0.085 0.915 15 C 0.012 3.988 16 N -0.913 5.913 17 Si 1.000 3.000 18 H -0.261 1.261 19 H -0.280 1.280 20 H -0.260 1.260 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.126 4.126 24 C -0.102 4.102 25 H 0.130 0.870 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.121 0.879 29 H 0.144 0.856 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.415 0.585 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.271 0.729 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.763 -10.960 26.546 29.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C 0.296 3.704 4 O -0.418 6.418 5 C -0.140 4.140 6 C -0.051 4.051 7 C 0.003 3.997 8 N -0.364 5.364 9 C 0.316 3.684 10 O -0.448 6.448 11 C -0.278 4.278 12 S 0.070 5.930 13 C -0.694 4.694 14 H 0.103 0.897 15 C -0.192 4.192 16 N -0.549 5.549 17 Si 0.821 3.179 18 H -0.186 1.186 19 H -0.205 1.205 20 H -0.185 1.185 21 C -0.152 4.152 22 C -0.155 4.155 23 C -0.164 4.164 24 C -0.140 4.140 25 H 0.148 0.852 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.138 0.862 29 H 0.161 0.839 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.253 0.747 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.202 -9.005 26.261 27.946 hybrid contribution 0.560 -1.191 -1.004 1.656 sum 3.762 -10.196 25.256 27.495 Atomic orbital electron populations 1.23453 0.75430 1.05429 1.02045 1.86489 1.24477 1.33344 1.83929 1.24390 0.93399 0.81058 0.71505 1.90684 1.68138 1.37025 1.45940 1.21745 0.85834 0.98482 1.07932 1.21268 0.97692 0.92466 0.93707 1.21655 0.98930 0.95973 0.83143 1.45760 1.50437 1.36063 1.04118 1.20163 0.80139 0.83065 0.85038 1.90699 1.37326 1.29672 1.87080 1.23361 1.05184 1.03965 0.95331 1.85669 1.64852 1.45729 0.96710 1.23185 1.33876 1.19307 0.93044 0.89677 1.26159 0.95683 0.96639 1.00745 1.70181 1.36621 1.29234 1.18895 0.84984 0.78751 0.78229 0.75900 1.18568 1.20528 1.18475 1.22544 0.91278 1.03596 0.97796 1.22496 0.98129 1.00584 0.94256 1.22421 0.94848 0.99858 0.99271 1.22102 0.97723 1.00153 0.94024 0.85183 0.91685 0.93325 0.86159 0.83850 0.92503 0.92792 0.74708 0.86779 0.87156 0.92015 0.91423 0.88576 0.90506 0.89731 0.90695 0.92083 0.91913 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.37 -7.13 10.56 -51.40 -0.54 -7.67 16 3 C 0.45 9.55 6.98 71.23 0.50 10.05 16 4 O -0.53 -14.90 12.27 21.96 0.27 -14.63 16 5 C -0.10 -1.36 4.52 29.85 0.13 -1.23 16 6 C -0.05 -0.81 0.36 -51.46 -0.02 -0.83 16 7 C 0.13 3.27 3.96 86.38 0.34 3.61 16 8 N -0.71 -18.50 4.97 -463.07 -2.30 -20.81 16 9 C 0.53 20.41 7.85 87.66 0.69 21.10 16 10 O -0.57 -28.20 15.85 -3.04 -0.05 -28.25 16 11 C -0.13 -5.08 6.16 71.23 0.44 -4.65 16 12 S -0.16 -8.87 20.57 -56.49 -1.16 -10.03 16 13 C -0.55 -31.36 9.50 67.95 0.65 -30.71 16 14 H 0.09 4.48 7.80 -2.91 -0.02 4.45 16 15 C 0.01 0.71 5.49 84.86 0.47 1.17 16 16 N -0.91 -56.75 13.22 21.65 0.29 -56.47 16 17 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 18 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 C -0.11 -1.26 5.47 31.67 0.17 -1.08 16 22 C -0.12 -1.02 6.91 31.88 0.22 -0.80 16 23 C -0.13 -1.56 6.83 31.67 0.22 -1.34 16 24 C -0.10 -1.74 4.69 31.32 0.15 -1.59 16 25 H 0.13 1.26 8.14 -2.38 -0.02 1.25 16 26 H 0.06 1.00 8.13 -2.39 -0.02 0.99 16 27 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 28 H 0.12 1.29 6.58 -2.39 -0.02 1.28 16 29 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.91 5.97 -2.39 -0.01 1.89 16 31 H 0.05 1.52 8.05 -2.39 -0.02 1.50 16 32 H 0.41 7.27 6.96 -92.71 -0.65 6.62 16 33 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 34 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 35 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 36 H 0.07 0.94 7.79 -2.39 -0.02 0.92 16 37 H 0.10 0.62 7.84 -2.38 -0.02 0.60 16 38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.06 1.08 6.69 -2.39 -0.02 1.06 16 43 H 0.05 1.10 7.67 -2.39 -0.02 1.08 16 Total: -1.00 -83.28 362.66 4.04 -79.24 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.37 Total: 17.64 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 5.15 Total: -4.63 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -2.02 Total: -77.27 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.32 Total: -50.56 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Total: -83.28 4.04 -79.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336694348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.110 kcal (2) G-P(sol) polarization free energy of solvation -83.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds