Wall clock time and date at job start Tue Mar 31 2020 11:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38138 * 120.01164 * 2 1 4 4 C 1.38227 * 120.09813 * 179.71967 * 3 2 1 5 5 C 1.38534 * 120.12637 * 0.55967 * 4 3 2 6 6 F 1.35102 * 119.99310 * 179.70008 * 5 4 3 7 7 C 1.38310 * 120.01976 * 359.72091 * 5 4 3 8 8 C 1.38891 * 119.90298 * 359.97438 * 7 5 4 9 9 N 1.39662 * 120.06314 * 180.02562 * 8 7 5 10 10 C 1.46508 * 119.99821 * 359.97438 * 9 8 7 11 11 H 1.08993 * 109.47068 * 324.99817 * 10 9 8 12 12 C 1.53002 * 109.47160 * 84.99933 * 10 9 8 13 13 C 1.50701 * 109.46765 * 204.99764 * 10 9 8 14 14 C 1.38298 * 119.93120 * 319.72615 * 13 10 9 15 15 C 1.38103 * 120.06534 * 179.72671 * 14 13 10 16 16 C 1.38873 * 119.93105 * 0.54612 * 15 14 13 17 17 O 1.35758 * 120.06935 * 179.74989 * 16 15 14 18 18 C 1.34826 * 116.99993 * 174.44147 * 17 16 15 19 19 H 1.08007 * 119.99916 * 5.05781 * 18 17 16 20 20 C 1.38653 * 120.00176 * 185.04951 * 18 17 16 21 21 N 1.31557 * 119.99659 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00213 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46995 * 90.00569 * 22 20 18 24 24 H 1.48501 * 109.47241 * 210.00578 * 22 20 18 25 25 H 1.48503 * 109.47251 * 330.00607 * 22 20 18 26 26 C 1.38883 * 119.86240 * 359.72867 * 16 15 14 27 27 C 1.38091 * 119.93011 * 359.97438 * 26 16 15 28 28 H 1.09000 * 109.46653 * 269.72522 * 1 2 3 29 29 H 1.09000 * 109.47377 * 29.72375 * 1 2 3 30 30 H 1.08995 * 109.47039 * 149.72346 * 1 2 3 31 31 H 1.08004 * 119.95055 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.93714 * 180.25767 * 4 3 2 33 33 H 1.08001 * 120.04422 * 180.02562 * 7 5 4 34 34 H 0.96993 * 120.00222 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.46841 * 300.00403 * 12 10 9 36 36 H 1.09000 * 109.46822 * 59.99458 * 12 10 9 37 37 H 1.08998 * 109.46998 * 179.97438 * 12 10 9 38 38 H 1.07998 * 119.96786 * 0.02562 * 14 13 10 39 39 H 1.08002 * 120.03340 * 180.27165 * 15 14 13 40 40 H 0.97000 * 119.99739 * 179.97438 * 21 20 18 41 41 H 1.07995 * 120.03150 * 179.97438 * 26 16 15 42 42 H 1.07997 * 119.96598 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1962 0.0000 4 6 3.5802 1.1983 0.0059 5 6 4.2773 0.0011 0.0000 6 9 5.6283 0.0064 -0.0004 7 6 3.5907 -1.1995 -0.0058 8 6 2.2018 -1.2028 -0.0053 9 7 1.5050 -2.4132 -0.0107 10 6 2.2393 -3.6810 -0.0174 11 1 3.1493 -3.5707 -0.6070 12 6 2.6048 -4.0663 1.4175 13 6 1.3761 -4.7581 -0.6224 14 6 0.0269 -4.8105 -0.3232 15 6 -0.7677 -5.7929 -0.8805 16 6 -0.2085 -6.7356 -1.7332 17 8 -0.9861 -7.7056 -2.2787 18 6 -0.4061 -8.5171 -3.1858 19 1 0.6515 -8.4324 -3.3881 20 6 -1.1673 -9.4605 -3.8589 21 7 -2.4555 -9.5634 -3.6127 22 14 -0.3636 -10.5853 -5.1152 23 1 0.1164 -11.8179 -4.4404 24 1 -1.3540 -10.9471 -6.1608 25 1 0.7856 -9.8851 -5.7430 26 6 1.1479 -6.6836 -2.0273 27 6 1.9360 -5.6951 -1.4717 28 1 -0.3633 -0.0049 1.0277 29 1 -0.3634 0.8924 -0.5095 30 1 -0.3633 -0.8875 -0.5181 31 1 1.6573 2.1312 0.0004 32 1 4.1177 2.1350 0.0100 33 1 4.1338 -2.1330 -0.0099 34 1 0.5351 -2.4145 -0.0099 35 1 3.2289 -3.2872 1.8551 36 1 1.6946 -4.1766 2.0071 37 1 3.1506 -5.0098 1.4125 38 1 -0.4066 -4.0795 0.3432 39 1 -1.8222 -5.8307 -0.6499 40 1 -2.9881 -10.2232 -4.0838 41 1 1.5857 -7.4156 -2.6898 42 1 2.9907 -5.6540 -1.7003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037212595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:30 Heat of formation + Delta-G solvation = -27.057240 kcal Electronic energy + Delta-G solvation = -24884.849177 eV Core-core repulsion = 21130.607340 eV Total energy + Delta-G solvation = -3754.241837 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.92278 -39.97257 -39.10113 -37.35401 -35.37364 -32.79666 -32.37233 -31.43369 -30.36883 -28.75895 -28.10835 -26.51391 -25.50216 -23.59283 -22.35024 -22.01443 -21.30173 -20.11978 -18.29300 -17.93678 -17.29010 -16.55443 -15.64702 -15.63387 -15.56843 -15.19829 -14.66492 -14.57499 -14.19373 -14.12859 -13.85554 -13.72029 -13.51475 -13.32328 -13.23191 -12.83719 -12.68683 -12.29210 -12.25774 -11.94859 -11.76018 -11.71477 -11.57826 -11.30292 -11.11577 -10.87616 -10.82262 -10.54950 -10.50399 -10.12701 -9.44062 -8.91446 -8.74305 -8.32948 -7.48618 -7.31463 -6.53598 -4.12668 1.12741 1.39777 2.07345 2.12786 3.07344 3.08866 3.13644 3.36558 3.58466 3.89691 4.27698 4.43057 4.62769 4.84023 4.88278 4.96922 4.99966 5.13067 5.15837 5.25240 5.36845 5.43486 5.49481 5.51677 5.55749 5.64273 5.73192 5.82098 5.83324 5.97336 6.07773 6.08656 6.16778 6.19111 6.29663 6.36785 6.53931 6.70916 6.78100 6.93289 7.04419 7.19622 7.31655 7.33898 7.65227 7.68896 7.90870 8.91843 9.59923 10.64051 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022898 B = 0.002537 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.545128 B =11033.009502 C =11493.919049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.178 4.178 3 C -0.045 4.045 4 C -0.220 4.220 5 C 0.140 3.860 6 F -0.144 7.144 7 C -0.237 4.237 8 C 0.255 3.745 9 N -0.728 5.728 10 C 0.202 3.798 11 H 0.078 0.922 12 C -0.161 4.161 13 C -0.195 4.195 14 C -0.067 4.067 15 C -0.190 4.190 16 C 0.156 3.844 17 O -0.175 6.175 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.230 4.230 27 C -0.058 4.058 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.402 0.598 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.271 0.729 41 H 0.129 0.871 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.717 16.959 7.583 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.183 4.183 3 C -0.063 4.063 4 C -0.241 4.241 5 C 0.120 3.880 6 F -0.122 7.122 7 C -0.261 4.261 8 C 0.148 3.852 9 N -0.356 5.356 10 C 0.097 3.903 11 H 0.096 0.904 12 C -0.219 4.219 13 C -0.197 4.197 14 C -0.086 4.086 15 C -0.209 4.209 16 C 0.102 3.898 17 O -0.077 6.077 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.250 4.250 27 C -0.077 4.077 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.241 0.759 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.415 16.528 7.521 20.013 hybrid contribution 0.375 -0.661 -0.667 1.011 sum 8.790 15.866 6.854 19.391 Atomic orbital electron populations 1.20594 0.90991 1.02674 1.01988 1.19418 0.96157 0.91551 1.11165 1.20570 0.92846 0.97082 0.95844 1.20778 0.94800 0.96630 1.11851 1.17378 0.76311 0.94183 1.00148 1.91475 1.29497 1.97477 1.93777 1.20533 0.93076 0.97658 1.14820 1.17359 0.90326 0.86142 0.91373 1.45212 1.08569 1.02108 1.79730 1.19599 0.93903 0.81156 0.95610 0.90394 1.22265 1.01863 1.01384 0.96431 1.19179 0.94390 1.00417 1.05681 1.20290 0.92824 0.97139 0.98297 1.20174 0.99944 0.97266 1.03524 1.19400 0.90048 0.88338 0.92031 1.83979 1.36950 1.36666 1.50146 1.21343 0.94704 1.13751 1.17161 0.88973 1.25309 0.95453 0.97660 0.98030 1.70035 1.05385 1.33700 1.40353 0.85701 0.78702 0.79684 0.79312 1.19800 1.20174 1.19126 1.21149 0.94015 1.02785 1.07024 1.20536 0.98348 0.93843 0.94979 0.91555 0.91417 0.91943 0.85415 0.85514 0.84796 0.75926 0.92730 0.92218 0.91561 0.87476 0.86413 0.91895 0.85365 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.57 36.00 0.34 -0.56 16 2 C -0.18 -1.86 5.90 -104.41 -0.62 -2.48 16 3 C -0.04 -0.43 9.69 -39.62 -0.38 -0.81 16 4 C -0.22 -2.27 10.02 -39.48 -0.40 -2.67 16 5 C 0.14 1.66 7.30 -39.45 -0.29 1.37 16 6 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 7 C -0.24 -2.85 8.82 -39.31 -0.35 -3.20 16 8 C 0.25 2.99 6.62 -83.80 -0.55 2.44 16 9 N -0.73 -8.55 5.10 -53.29 -0.27 -8.82 16 10 C 0.20 2.53 2.47 -69.08 -0.17 2.36 16 11 H 0.08 0.96 6.34 -51.93 -0.33 0.64 16 12 C -0.16 -1.84 9.40 37.16 0.35 -1.49 16 13 C -0.20 -3.03 4.96 -104.57 -0.52 -3.55 16 14 C -0.07 -1.08 9.04 -39.61 -0.36 -1.44 16 15 C -0.19 -3.77 9.99 -39.40 -0.39 -4.16 16 16 C 0.16 3.61 6.65 -39.11 -0.26 3.35 16 17 O -0.17 -4.83 9.76 0.03 0.00 -4.83 16 18 C -0.39 -10.70 9.49 30.89 0.29 -10.41 16 19 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -24.71 13.67 55.48 0.76 -23.95 16 22 Si 0.94 20.05 29.55 -169.99 -5.02 15.03 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 C -0.23 -4.76 9.17 -39.40 -0.36 -5.12 16 27 C -0.06 -1.00 9.66 -39.61 -0.38 -1.38 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.06 0.56 6.55 -51.93 -0.34 0.22 16 31 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 32 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 33 H 0.13 1.55 6.11 -52.49 -0.32 1.22 16 34 H 0.40 4.51 4.87 -40.82 -0.20 4.31 16 35 H 0.05 0.58 7.70 -51.93 -0.40 0.18 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 1.42 6.93 -52.49 -0.36 1.06 16 39 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 42 H 0.11 1.57 8.03 -52.49 -0.42 1.15 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -29.40 353.27 -8.35 -37.75 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.03 Total: 8.01 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: -4.14 Total: -26.75 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.49 Total: -32.78 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: 0.00 Total: -4.83 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.40 -8.35 -37.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037212595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.692 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds