Wall clock time and date at job start Tue Mar 31 2020 11:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38138 * 120.01164 * 2 1 4 4 C 1.38227 * 120.09813 * 179.71967 * 3 2 1 5 5 C 1.38534 * 120.12637 * 0.55967 * 4 3 2 6 6 F 1.35102 * 119.99310 * 179.70008 * 5 4 3 7 7 C 1.38310 * 120.01976 * 359.72091 * 5 4 3 8 8 C 1.38891 * 119.90298 * 359.97438 * 7 5 4 9 9 N 1.39662 * 120.06314 * 180.02562 * 8 7 5 10 10 C 1.46508 * 119.99821 * 359.97438 * 9 8 7 11 11 H 1.08993 * 109.47068 * 324.99817 * 10 9 8 12 12 C 1.53002 * 109.47160 * 84.99933 * 10 9 8 13 13 C 1.50701 * 109.46765 * 204.99764 * 10 9 8 14 14 C 1.38298 * 119.93120 * 319.72615 * 13 10 9 15 15 C 1.38103 * 120.06534 * 179.72671 * 14 13 10 16 16 C 1.38873 * 119.93105 * 0.54612 * 15 14 13 17 17 O 1.35758 * 120.06935 * 179.74989 * 16 15 14 18 18 C 1.34826 * 116.99993 * 174.44147 * 17 16 15 19 19 H 1.08007 * 119.99916 * 5.05781 * 18 17 16 20 20 C 1.38653 * 120.00176 * 185.04951 * 18 17 16 21 21 N 1.31557 * 119.99659 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00213 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46995 * 90.00569 * 22 20 18 24 24 H 1.48501 * 109.47241 * 210.00578 * 22 20 18 25 25 H 1.48503 * 109.47251 * 330.00607 * 22 20 18 26 26 C 1.38883 * 119.86240 * 359.72867 * 16 15 14 27 27 C 1.38091 * 119.93011 * 359.97438 * 26 16 15 28 28 H 1.09000 * 109.46653 * 269.72522 * 1 2 3 29 29 H 1.09000 * 109.47377 * 29.72375 * 1 2 3 30 30 H 1.08995 * 109.47039 * 149.72346 * 1 2 3 31 31 H 1.08004 * 119.95055 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.93714 * 180.25767 * 4 3 2 33 33 H 1.08001 * 120.04422 * 180.02562 * 7 5 4 34 34 H 0.96993 * 120.00222 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.46841 * 300.00403 * 12 10 9 36 36 H 1.09000 * 109.46822 * 59.99458 * 12 10 9 37 37 H 1.08998 * 109.46998 * 179.97438 * 12 10 9 38 38 H 1.07998 * 119.96786 * 0.02562 * 14 13 10 39 39 H 1.08002 * 120.03340 * 180.27165 * 15 14 13 40 40 H 0.97000 * 119.99739 * 179.97438 * 21 20 18 41 41 H 1.07995 * 120.03150 * 179.97438 * 26 16 15 42 42 H 1.07997 * 119.96598 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1962 0.0000 4 6 3.5802 1.1983 0.0059 5 6 4.2773 0.0011 0.0000 6 9 5.6283 0.0064 -0.0004 7 6 3.5907 -1.1995 -0.0058 8 6 2.2018 -1.2028 -0.0053 9 7 1.5050 -2.4132 -0.0107 10 6 2.2393 -3.6810 -0.0174 11 1 3.1493 -3.5707 -0.6070 12 6 2.6048 -4.0663 1.4175 13 6 1.3761 -4.7581 -0.6224 14 6 0.0269 -4.8105 -0.3232 15 6 -0.7677 -5.7929 -0.8805 16 6 -0.2085 -6.7356 -1.7332 17 8 -0.9861 -7.7056 -2.2787 18 6 -0.4061 -8.5171 -3.1858 19 1 0.6515 -8.4324 -3.3881 20 6 -1.1673 -9.4605 -3.8589 21 7 -2.4555 -9.5634 -3.6127 22 14 -0.3636 -10.5853 -5.1152 23 1 0.1164 -11.8179 -4.4404 24 1 -1.3540 -10.9471 -6.1608 25 1 0.7856 -9.8851 -5.7430 26 6 1.1479 -6.6836 -2.0273 27 6 1.9360 -5.6951 -1.4717 28 1 -0.3633 -0.0049 1.0277 29 1 -0.3634 0.8924 -0.5095 30 1 -0.3633 -0.8875 -0.5181 31 1 1.6573 2.1312 0.0004 32 1 4.1177 2.1350 0.0100 33 1 4.1338 -2.1330 -0.0099 34 1 0.5351 -2.4145 -0.0099 35 1 3.2289 -3.2872 1.8551 36 1 1.6946 -4.1766 2.0071 37 1 3.1506 -5.0098 1.4125 38 1 -0.4066 -4.0795 0.3432 39 1 -1.8222 -5.8307 -0.6499 40 1 -2.9881 -10.2232 -4.0838 41 1 1.5857 -7.4156 -2.6898 42 1 2.9907 -5.6540 -1.7003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037212595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:29 Heat of formation + Delta-G solvation = -42.023621 kcal Electronic energy + Delta-G solvation = -24885.498168 eV Core-core repulsion = 21130.607340 eV Total energy + Delta-G solvation = -3754.890828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.82207 -41.11584 -40.44129 -38.79536 -36.58322 -34.32804 -33.55324 -32.48832 -31.87456 -29.70406 -29.42467 -27.39171 -27.26802 -24.65244 -23.80304 -23.16657 -22.22392 -21.41085 -19.84584 -19.10577 -18.85040 -17.67715 -16.68128 -16.56201 -16.50296 -16.44476 -16.16582 -15.86520 -15.55802 -15.52266 -15.11847 -14.92310 -14.57080 -14.40092 -14.23875 -14.14142 -13.95686 -13.57236 -13.46839 -12.98471 -12.97739 -12.80166 -12.64999 -12.45493 -12.41245 -12.29328 -12.14085 -11.90003 -11.81287 -11.22332 -11.02472 -10.79532 -9.83361 -9.56465 -8.97212 -8.49098 -8.35169 -6.17190 0.30257 0.54401 0.56064 0.62710 1.34634 1.43151 1.51702 2.16257 2.40550 2.76289 2.81215 3.13537 3.43737 3.47220 3.75709 3.86005 4.03091 4.08639 4.12856 4.18432 4.33585 4.38522 4.42187 4.51154 4.62441 4.69369 4.76758 4.86090 4.89219 4.93300 5.00549 5.06480 5.12763 5.16178 5.22939 5.31116 5.36673 5.37772 5.50004 5.57475 5.68255 5.69062 5.94698 6.00628 6.14422 6.36562 6.77511 6.95889 7.75675 8.73935 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022898 B = 0.002537 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.545128 B =11033.009502 C =11493.919049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.180 4.180 3 C -0.044 4.044 4 C -0.218 4.218 5 C 0.119 3.881 6 F -0.152 7.152 7 C -0.247 4.247 8 C 0.241 3.759 9 N -0.729 5.729 10 C 0.207 3.793 11 H 0.086 0.914 12 C -0.157 4.157 13 C -0.166 4.166 14 C -0.056 4.056 15 C -0.200 4.200 16 C 0.116 3.884 17 O -0.231 6.231 18 C -0.414 4.414 19 H 0.102 0.898 20 C -0.022 4.022 21 N -0.920 5.920 22 Si 1.017 2.983 23 H -0.263 1.263 24 H -0.272 1.272 25 H -0.253 1.253 26 C -0.239 4.239 27 C -0.059 4.059 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.157 0.843 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.405 0.595 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.145 0.855 39 H 0.115 0.885 40 H 0.273 0.727 41 H 0.119 0.881 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.532 19.542 8.345 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.184 4.184 3 C -0.062 4.062 4 C -0.239 4.239 5 C 0.099 3.901 6 F -0.131 7.131 7 C -0.270 4.270 8 C 0.135 3.865 9 N -0.359 5.359 10 C 0.102 3.898 11 H 0.104 0.896 12 C -0.215 4.215 13 C -0.167 4.167 14 C -0.074 4.074 15 C -0.219 4.219 16 C 0.065 3.935 17 O -0.137 6.137 18 C -0.490 4.490 19 H 0.119 0.881 20 C -0.219 4.219 21 N -0.558 5.558 22 Si 0.836 3.164 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.177 1.177 26 C -0.259 4.259 27 C -0.077 4.077 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.174 0.826 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.244 0.756 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.163 0.837 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.273 19.172 8.317 23.287 hybrid contribution -0.030 -1.069 -0.677 1.265 sum 10.244 18.104 7.640 22.160 Atomic orbital electron populations 1.20649 0.89646 1.03176 1.02804 1.19737 0.97262 0.91393 1.10054 1.20923 0.92620 0.98023 0.94682 1.21076 0.95383 0.96805 1.10623 1.17621 0.76159 0.94923 1.01416 1.91453 1.30076 1.97541 1.93983 1.20612 0.93396 0.97840 1.15202 1.17462 0.90294 0.86444 0.92305 1.45041 1.08579 1.01767 1.80539 1.19546 0.93377 0.80549 0.96301 0.89614 1.22217 1.02089 1.01890 0.95317 1.19637 0.94430 0.99737 1.02915 1.20658 0.92867 0.96310 0.97597 1.20434 1.00541 0.97592 1.03316 1.19964 0.91181 0.88968 0.93381 1.83945 1.38687 1.38909 1.52160 1.21813 0.95377 1.14201 1.17572 0.88064 1.26567 0.96018 0.99223 1.00138 1.70178 1.07286 1.35566 1.42749 0.84606 0.77952 0.77427 0.76383 1.18787 1.19633 1.17679 1.21241 0.93480 1.03732 1.07401 1.20894 0.99694 0.92763 0.94358 0.90505 0.89968 0.92455 0.82555 0.83858 0.84788 0.75598 0.91700 0.92259 0.91293 0.83749 0.86662 0.91810 0.86278 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 9.57 71.24 0.68 -0.76 16 2 C -0.18 -3.17 5.90 -19.73 -0.12 -3.29 16 3 C -0.04 -0.68 9.69 22.24 0.22 -0.47 16 4 C -0.22 -3.89 10.02 22.34 0.22 -3.67 16 5 C 0.12 2.58 7.30 22.36 0.16 2.74 16 6 F -0.15 -3.56 17.27 44.97 0.78 -2.79 16 7 C -0.25 -5.36 8.82 22.44 0.20 -5.16 16 8 C 0.24 4.95 6.62 38.21 0.25 5.21 16 9 N -0.73 -14.78 5.10 -322.52 -1.64 -16.43 16 10 C 0.21 4.50 2.47 44.24 0.11 4.61 16 11 H 0.09 1.81 6.34 -2.39 -0.02 1.80 16 12 C -0.16 -3.05 9.40 71.98 0.68 -2.37 16 13 C -0.17 -4.71 4.96 -19.83 -0.10 -4.80 16 14 C -0.06 -1.70 9.04 22.25 0.20 -1.50 16 15 C -0.20 -8.00 9.99 22.39 0.22 -7.77 16 16 C 0.12 5.55 6.65 22.58 0.15 5.70 16 17 O -0.23 -13.59 9.76 -22.79 -0.22 -13.82 16 18 C -0.41 -23.70 9.49 67.92 0.64 -23.05 16 19 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 20 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 21 N -0.92 -55.86 13.67 21.61 0.30 -55.56 16 22 Si 1.02 42.30 29.55 68.60 2.03 44.33 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 26 C -0.24 -9.99 9.17 22.39 0.21 -9.78 16 27 C -0.06 -1.89 9.66 22.25 0.21 -1.68 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 30 H 0.06 0.85 6.55 -2.39 -0.02 0.83 16 31 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 32 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.13 2.79 6.11 -2.91 -0.02 2.77 16 34 H 0.41 7.69 4.87 -92.71 -0.45 7.24 16 35 H 0.06 1.17 7.70 -2.39 -0.02 1.16 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.14 3.31 6.93 -2.91 -0.02 3.29 16 39 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 40 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.12 5.10 5.64 -2.91 -0.02 5.09 16 42 H 0.14 3.63 8.03 -2.91 -0.02 3.61 16 Total: -1.00 -68.58 353.27 6.25 -62.32 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.61 Total: 28.74 kcal Atomic # 6 Polarization: -51.21 SS G_CDS: 4.41 Total: -46.80 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -1.35 Total: -71.99 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.22 Total: -13.82 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -68.58 6.25 -62.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037212595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.300 kcal (2) G-P(sol) polarization free energy of solvation -68.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds