Wall clock time and date at job start Tue Mar 31 2020 11:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38144 * 120.01066 * 2 1 4 4 C 1.38225 * 120.09738 * 180.27802 * 3 2 1 5 5 C 1.38540 * 120.12399 * 359.72545 * 4 3 2 6 6 F 1.35100 * 119.98541 * 179.97438 * 5 4 3 7 7 C 1.38298 * 120.02431 * 359.97438 * 5 4 3 8 8 C 1.38891 * 119.89941 * 0.02562 * 7 5 4 9 9 N 1.39675 * 120.05898 * 180.02562 * 8 7 5 10 10 C 1.46499 * 120.00130 * 359.97438 * 9 8 7 11 11 H 1.09009 * 109.46722 * 35.00950 * 10 9 8 12 12 C 1.52995 * 109.47401 * 275.00663 * 10 9 8 13 13 C 1.50706 * 109.46888 * 155.00087 * 10 9 8 14 14 C 1.38294 * 119.92908 * 220.00348 * 13 10 9 15 15 C 1.38107 * 120.06624 * 179.97438 * 14 13 10 16 16 C 1.38869 * 119.93033 * 359.97438 * 15 14 13 17 17 O 1.35750 * 120.07285 * 180.02562 * 16 15 14 18 18 C 1.34825 * 117.00690 * 174.43767 * 17 16 15 19 19 H 1.08005 * 119.99952 * 5.05628 * 18 17 16 20 20 C 1.38648 * 120.00448 * 185.05536 * 18 17 16 21 21 N 1.31561 * 120.00054 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00233 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46927 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47130 * 120.00088 * 22 20 18 25 25 H 1.48499 * 109.46973 * 239.99613 * 22 20 18 26 26 C 1.38880 * 119.86399 * 0.02562 * 16 15 14 27 27 C 1.38100 * 119.93272 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.46856 * 270.27560 * 1 2 3 29 29 H 1.08997 * 109.47588 * 30.27172 * 1 2 3 30 30 H 1.08997 * 109.47492 * 150.28021 * 1 2 3 31 31 H 1.08006 * 119.94867 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.93992 * 179.69597 * 4 3 2 33 33 H 1.07996 * 120.05312 * 180.02562 * 7 5 4 34 34 H 0.97000 * 120.00064 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.46904 * 299.99620 * 12 10 9 36 36 H 1.08996 * 109.47216 * 59.99803 * 12 10 9 37 37 H 1.09005 * 109.46805 * 179.97438 * 12 10 9 38 38 H 1.07998 * 119.96965 * 359.70221 * 14 13 10 39 39 H 1.07999 * 120.03071 * 179.97438 * 15 14 13 40 40 H 0.96996 * 120.00455 * 180.02562 * 21 20 18 41 41 H 1.08006 * 120.03804 * 179.97438 * 26 16 15 42 42 H 1.07995 * 119.96969 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1962 0.0000 4 6 3.5801 1.1983 -0.0058 5 6 4.2773 0.0011 -0.0059 6 9 5.6282 0.0064 -0.0121 7 6 3.5907 -1.1994 0.0004 8 6 2.2018 -1.2027 0.0062 9 7 1.5051 -2.4132 0.0131 10 6 2.2392 -3.6810 0.0135 11 1 3.1524 -3.5717 0.5987 12 6 2.5972 -4.0637 -1.4239 13 6 1.3793 -4.7592 0.6212 14 6 1.9437 -5.6980 1.4654 15 6 1.1582 -6.6869 2.0243 16 6 -0.1997 -6.7376 1.7382 17 8 -0.9746 -7.7082 2.2863 18 6 -2.3017 -7.6324 2.0606 19 1 -2.6947 -6.8734 1.4004 20 6 -3.1619 -8.5289 2.6760 21 7 -2.6832 -9.4538 3.4799 22 14 -5.0005 -8.4244 2.3627 23 1 -5.2803 -7.3057 1.4271 24 1 -5.4743 -9.6993 1.7667 25 1 -5.7084 -8.1847 3.6459 26 6 -0.7635 -5.7934 0.8901 27 6 0.0274 -4.8076 0.3335 28 1 -0.3633 0.0049 1.0277 29 1 -0.3634 0.8875 -0.5180 30 1 -0.3634 -0.8924 -0.5094 31 1 1.6572 2.1312 -0.0004 32 1 4.1177 2.1350 -0.0108 33 1 4.1337 -2.1330 0.0007 34 1 0.5351 -2.4145 0.0168 35 1 1.6840 -4.1729 -2.0089 36 1 3.2191 -3.2838 -1.8633 37 1 3.1438 -5.0067 -1.4234 38 1 3.0006 -5.6604 1.6844 39 1 1.5997 -7.4200 2.6831 40 1 -3.2849 -10.0812 3.9101 41 1 -1.8193 -5.8304 0.6653 42 1 -0.4103 -4.0732 -0.3264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037212596.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:32 Heat of formation + Delta-G solvation = -27.079334 kcal Electronic energy + Delta-G solvation = -24931.013489 eV Core-core repulsion = 21176.770694 eV Total energy + Delta-G solvation = -3754.242795 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.92382 -39.97261 -39.10157 -37.34903 -35.38361 -32.78908 -32.37424 -31.43238 -30.35470 -28.78722 -28.10547 -26.52620 -25.44913 -23.62569 -22.43037 -21.96264 -21.30527 -20.03871 -18.29990 -18.06386 -17.09414 -16.72690 -15.64719 -15.63817 -15.43993 -15.27680 -14.59183 -14.52766 -14.30713 -14.17683 -13.79892 -13.74631 -13.56056 -13.28728 -13.14962 -12.88350 -12.69411 -12.27640 -12.20775 -12.00164 -11.81587 -11.70750 -11.56804 -11.31802 -11.11135 -10.89178 -10.74171 -10.61054 -10.48502 -10.12622 -9.44088 -8.92332 -8.74266 -8.32853 -7.48470 -7.31350 -6.53984 -4.13115 1.12825 1.39857 2.07534 2.12725 3.06051 3.07905 3.13526 3.36662 3.58730 3.88873 4.27726 4.43020 4.62847 4.84136 4.88632 4.96603 4.99409 5.12859 5.16398 5.25935 5.36460 5.41792 5.49797 5.51605 5.54503 5.65772 5.73378 5.81170 5.84833 5.97250 6.08210 6.08555 6.16728 6.19646 6.28516 6.36561 6.55184 6.73198 6.75828 6.92137 7.09392 7.14925 7.30662 7.35302 7.65292 7.68957 7.90445 8.91439 9.59950 10.63764 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.002652 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.758873 B =10556.061438 C =11368.387936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.178 4.178 3 C -0.045 4.045 4 C -0.220 4.220 5 C 0.140 3.860 6 F -0.144 7.144 7 C -0.237 4.237 8 C 0.255 3.745 9 N -0.728 5.728 10 C 0.202 3.798 11 H 0.079 0.921 12 C -0.161 4.161 13 C -0.195 4.195 14 C -0.062 4.062 15 C -0.189 4.189 16 C 0.156 3.844 17 O -0.175 6.175 18 C -0.393 4.393 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.231 4.231 27 C -0.063 4.063 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.403 0.597 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.271 0.729 41 H 0.128 0.872 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.130 17.254 -7.933 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.183 4.183 3 C -0.063 4.063 4 C -0.241 4.241 5 C 0.120 3.880 6 F -0.122 7.122 7 C -0.261 4.261 8 C 0.148 3.852 9 N -0.356 5.356 10 C 0.097 3.903 11 H 0.097 0.903 12 C -0.220 4.220 13 C -0.196 4.196 14 C -0.081 4.081 15 C -0.208 4.208 16 C 0.102 3.898 17 O -0.078 6.078 18 C -0.469 4.469 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.250 4.250 27 C -0.082 4.082 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.241 0.759 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.226 16.639 -7.646 20.074 hybrid contribution -1.034 -0.013 -0.164 1.047 sum 7.192 16.626 -7.810 19.727 Atomic orbital electron populations 1.20586 0.90994 1.02376 1.02228 1.19419 0.96151 0.91565 1.11144 1.20568 0.92851 0.97075 0.95852 1.20777 0.94793 0.96634 1.11852 1.17374 0.76309 0.94181 1.00159 1.91474 1.29496 1.97477 1.93778 1.20527 0.93058 0.97657 1.14831 1.17362 0.90332 0.86136 0.91381 1.45224 1.08587 1.02114 1.79723 1.19600 0.93935 0.81162 0.95574 0.90338 1.22267 1.01869 1.01405 0.96428 1.19182 0.94299 1.00359 1.05800 1.20428 0.98281 0.93903 0.95446 1.20205 0.91812 1.02413 1.06396 1.19400 0.91252 0.87891 0.91254 1.83980 1.19167 1.40608 1.64012 1.21381 0.78670 1.17779 1.29090 0.88958 1.25312 1.00396 0.95234 0.95540 1.70043 1.35875 1.16217 1.27296 0.85637 0.80508 0.78665 0.78565 1.19071 1.20064 1.20060 1.21127 1.00923 0.98933 1.04064 1.20400 0.92849 0.97016 0.97918 0.91378 0.91462 0.92158 0.85418 0.85511 0.84782 0.75920 0.92258 0.92732 0.91533 0.86910 0.86313 0.91936 0.85449 0.87934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 9.57 36.00 0.34 -0.57 16 2 C -0.18 -1.88 5.90 -104.41 -0.62 -2.50 16 3 C -0.04 -0.43 9.69 -39.62 -0.38 -0.81 16 4 C -0.22 -2.28 10.02 -39.47 -0.40 -2.67 16 5 C 0.14 1.66 7.30 -39.45 -0.29 1.37 16 6 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 7 C -0.24 -2.84 8.83 -39.32 -0.35 -3.19 16 8 C 0.25 3.01 6.62 -83.80 -0.55 2.46 16 9 N -0.73 -8.67 5.10 -53.29 -0.27 -8.94 16 10 C 0.20 2.53 2.47 -69.08 -0.17 2.36 16 11 H 0.08 0.96 6.34 -51.92 -0.33 0.63 16 12 C -0.16 -1.85 9.41 37.16 0.35 -1.50 16 13 C -0.19 -3.03 4.96 -104.57 -0.52 -3.55 16 14 C -0.06 -1.03 9.66 -39.61 -0.38 -1.41 16 15 C -0.19 -3.79 9.99 -39.40 -0.39 -4.18 16 16 C 0.16 3.61 6.65 -39.11 -0.26 3.35 16 17 O -0.17 -4.84 9.76 0.06 0.00 -4.83 16 18 C -0.39 -10.65 9.49 30.88 0.29 -10.36 16 19 H 0.09 2.31 5.20 -52.48 -0.27 2.03 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -24.69 13.67 55.48 0.76 -23.93 16 22 Si 0.94 19.96 29.55 -169.99 -5.02 14.94 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 26 C -0.23 -4.72 9.17 -39.39 -0.36 -5.08 16 27 C -0.06 -1.05 9.05 -39.61 -0.36 -1.41 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.06 0.52 6.55 -51.93 -0.34 0.18 16 31 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.13 1.53 6.12 -52.49 -0.32 1.21 16 34 H 0.40 4.64 4.86 -40.82 -0.20 4.45 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.58 7.71 -51.93 -0.40 0.18 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 1.55 8.03 -52.49 -0.42 1.13 16 39 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.13 2.62 5.64 -52.48 -0.30 2.32 16 42 H 0.10 1.43 6.91 -52.49 -0.36 1.07 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -29.37 353.27 -8.35 -37.72 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.03 Total: 8.20 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -4.14 Total: -26.73 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.49 Total: -32.87 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: 0.00 Total: -4.83 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.37 -8.35 -37.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037212596.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.636 kcal (2) G-P(sol) polarization free energy of solvation -29.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds