Wall clock time and date at job start Tue Mar 31 2020 11:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38144 * 120.01066 * 2 1 4 4 C 1.38225 * 120.09738 * 180.27802 * 3 2 1 5 5 C 1.38540 * 120.12399 * 359.72545 * 4 3 2 6 6 F 1.35100 * 119.98541 * 179.97438 * 5 4 3 7 7 C 1.38298 * 120.02431 * 359.97438 * 5 4 3 8 8 C 1.38891 * 119.89941 * 0.02562 * 7 5 4 9 9 N 1.39675 * 120.05898 * 180.02562 * 8 7 5 10 10 C 1.46499 * 120.00130 * 359.97438 * 9 8 7 11 11 H 1.09009 * 109.46722 * 35.00950 * 10 9 8 12 12 C 1.52995 * 109.47401 * 275.00663 * 10 9 8 13 13 C 1.50706 * 109.46888 * 155.00087 * 10 9 8 14 14 C 1.38294 * 119.92908 * 220.00348 * 13 10 9 15 15 C 1.38107 * 120.06624 * 179.97438 * 14 13 10 16 16 C 1.38869 * 119.93033 * 359.97438 * 15 14 13 17 17 O 1.35750 * 120.07285 * 180.02562 * 16 15 14 18 18 C 1.34825 * 117.00690 * 174.43767 * 17 16 15 19 19 H 1.08005 * 119.99952 * 5.05628 * 18 17 16 20 20 C 1.38648 * 120.00448 * 185.05536 * 18 17 16 21 21 N 1.31561 * 120.00054 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00233 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46927 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47130 * 120.00088 * 22 20 18 25 25 H 1.48499 * 109.46973 * 239.99613 * 22 20 18 26 26 C 1.38880 * 119.86399 * 0.02562 * 16 15 14 27 27 C 1.38100 * 119.93272 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.46856 * 270.27560 * 1 2 3 29 29 H 1.08997 * 109.47588 * 30.27172 * 1 2 3 30 30 H 1.08997 * 109.47492 * 150.28021 * 1 2 3 31 31 H 1.08006 * 119.94867 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.93992 * 179.69597 * 4 3 2 33 33 H 1.07996 * 120.05312 * 180.02562 * 7 5 4 34 34 H 0.97000 * 120.00064 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.46904 * 299.99620 * 12 10 9 36 36 H 1.08996 * 109.47216 * 59.99803 * 12 10 9 37 37 H 1.09005 * 109.46805 * 179.97438 * 12 10 9 38 38 H 1.07998 * 119.96965 * 359.70221 * 14 13 10 39 39 H 1.07999 * 120.03071 * 179.97438 * 15 14 13 40 40 H 0.96996 * 120.00455 * 180.02562 * 21 20 18 41 41 H 1.08006 * 120.03804 * 179.97438 * 26 16 15 42 42 H 1.07995 * 119.96969 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1962 0.0000 4 6 3.5801 1.1983 -0.0058 5 6 4.2773 0.0011 -0.0059 6 9 5.6282 0.0064 -0.0121 7 6 3.5907 -1.1994 0.0004 8 6 2.2018 -1.2027 0.0062 9 7 1.5051 -2.4132 0.0131 10 6 2.2392 -3.6810 0.0135 11 1 3.1524 -3.5717 0.5987 12 6 2.5972 -4.0637 -1.4239 13 6 1.3793 -4.7592 0.6212 14 6 1.9437 -5.6980 1.4654 15 6 1.1582 -6.6869 2.0243 16 6 -0.1997 -6.7376 1.7382 17 8 -0.9746 -7.7082 2.2863 18 6 -2.3017 -7.6324 2.0606 19 1 -2.6947 -6.8734 1.4004 20 6 -3.1619 -8.5289 2.6760 21 7 -2.6832 -9.4538 3.4799 22 14 -5.0005 -8.4244 2.3627 23 1 -5.2803 -7.3057 1.4271 24 1 -5.4743 -9.6993 1.7667 25 1 -5.7084 -8.1847 3.6459 26 6 -0.7635 -5.7934 0.8901 27 6 0.0274 -4.8076 0.3335 28 1 -0.3633 0.0049 1.0277 29 1 -0.3634 0.8875 -0.5180 30 1 -0.3634 -0.8924 -0.5094 31 1 1.6572 2.1312 -0.0004 32 1 4.1177 2.1350 -0.0108 33 1 4.1337 -2.1330 0.0007 34 1 0.5351 -2.4145 0.0168 35 1 1.6840 -4.1729 -2.0089 36 1 3.2191 -3.2838 -1.8633 37 1 3.1438 -5.0067 -1.4234 38 1 3.0006 -5.6604 1.6844 39 1 1.5997 -7.4200 2.6831 40 1 -3.2849 -10.0812 3.9101 41 1 -1.8193 -5.8304 0.6653 42 1 -0.4103 -4.0732 -0.3264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037212596.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:32 Heat of formation + Delta-G solvation = -42.011536 kcal Electronic energy + Delta-G solvation = -24931.660998 eV Core-core repulsion = 21176.770694 eV Total energy + Delta-G solvation = -3754.890304 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.82088 -41.11700 -40.44001 -38.79083 -36.59250 -34.31994 -33.55259 -32.48316 -31.86786 -29.76636 -29.38587 -27.43206 -27.19748 -24.69235 -23.80883 -23.17804 -22.24274 -21.27619 -19.90234 -19.30487 -18.62402 -17.77197 -16.64721 -16.54643 -16.47049 -16.41274 -16.19611 -15.77866 -15.68897 -15.55823 -15.03058 -14.93660 -14.61490 -14.38276 -14.23755 -14.13371 -13.99162 -13.55272 -13.44033 -12.99162 -12.98234 -12.84560 -12.65379 -12.44045 -12.43099 -12.26924 -12.11106 -11.89753 -11.82068 -11.21317 -11.02399 -10.80386 -9.83008 -9.56714 -8.96927 -8.48798 -8.35383 -6.17027 0.30069 0.54563 0.56292 0.62859 1.34880 1.42671 1.52932 2.16264 2.40323 2.76668 2.81228 3.13782 3.44026 3.48702 3.74126 3.86394 4.01235 4.08173 4.12412 4.19415 4.35355 4.38061 4.41944 4.52632 4.62098 4.68918 4.76279 4.84556 4.88027 4.93170 5.02808 5.05999 5.12379 5.15263 5.23266 5.31532 5.35903 5.37741 5.51721 5.56890 5.67840 5.68217 5.94730 6.00946 6.14930 6.36852 6.76234 6.96158 7.76396 8.74566 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.002652 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.758873 B =10556.061438 C =11368.387936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.180 4.180 3 C -0.044 4.044 4 C -0.218 4.218 5 C 0.119 3.881 6 F -0.151 7.151 7 C -0.246 4.246 8 C 0.240 3.760 9 N -0.730 5.730 10 C 0.207 3.793 11 H 0.089 0.911 12 C -0.157 4.157 13 C -0.166 4.166 14 C -0.056 4.056 15 C -0.201 4.201 16 C 0.116 3.884 17 O -0.232 6.232 18 C -0.412 4.412 19 H 0.103 0.897 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.249 1.249 24 H -0.269 1.269 25 H -0.269 1.269 26 C -0.238 4.238 27 C -0.058 4.058 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.157 0.843 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.404 0.596 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.150 0.850 39 H 0.114 0.886 40 H 0.273 0.727 41 H 0.120 0.880 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.426 20.583 -9.669 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.185 4.185 3 C -0.062 4.062 4 C -0.239 4.239 5 C 0.099 3.901 6 F -0.130 7.130 7 C -0.270 4.270 8 C 0.135 3.865 9 N -0.360 5.360 10 C 0.102 3.898 11 H 0.107 0.893 12 C -0.215 4.215 13 C -0.167 4.167 14 C -0.075 4.075 15 C -0.220 4.220 16 C 0.065 3.935 17 O -0.138 6.138 18 C -0.488 4.488 19 H 0.121 0.879 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.173 1.173 24 H -0.194 1.194 25 H -0.195 1.195 26 C -0.257 4.257 27 C -0.076 4.076 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.174 0.826 32 H 0.162 0.838 33 H 0.153 0.847 34 H 0.243 0.757 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.167 0.833 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.568 20.029 -9.415 23.732 hybrid contribution -0.801 -0.733 0.250 1.114 sum 7.768 19.297 -9.164 22.731 Atomic orbital electron populations 1.20640 0.89743 1.03341 1.02527 1.19731 0.97203 0.91451 1.10137 1.20919 0.92648 0.97992 0.94682 1.21076 0.95355 0.96839 1.10626 1.17613 0.76170 0.94905 1.01366 1.91453 1.30045 1.97538 1.93973 1.20610 0.93329 0.97882 1.15149 1.17468 0.90334 0.86408 0.92308 1.45063 1.08562 1.01843 1.80545 1.19563 0.93477 0.80491 0.96269 0.89322 1.22221 1.02009 1.01999 0.95318 1.19645 0.94195 0.99796 1.03095 1.20839 0.99770 0.92485 0.94370 1.20450 0.91183 1.03485 1.06906 1.19955 0.92207 0.88667 0.92656 1.83947 1.19661 1.43388 1.66814 1.21861 0.79212 1.18282 1.29465 0.87935 1.26589 1.05687 0.94630 0.95151 1.70188 1.37824 1.18055 1.29827 0.84535 0.73641 0.79240 0.78845 1.17270 1.19430 1.19451 1.21225 1.01116 0.99395 1.04009 1.20718 0.93112 0.96332 0.97450 0.91338 0.89651 0.92126 0.82586 0.83841 0.84663 0.75705 0.92513 0.91691 0.91119 0.83260 0.86784 0.91835 0.86207 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 9.57 71.23 0.68 -0.81 16 2 C -0.18 -3.23 5.90 -19.73 -0.12 -3.35 16 3 C -0.04 -0.69 9.69 22.24 0.22 -0.47 16 4 C -0.22 -3.89 10.02 22.34 0.22 -3.67 16 5 C 0.12 2.58 7.30 22.36 0.16 2.74 16 6 F -0.15 -3.52 17.27 44.97 0.78 -2.74 16 7 C -0.25 -5.31 8.83 22.44 0.20 -5.11 16 8 C 0.24 4.98 6.62 38.21 0.25 5.23 16 9 N -0.73 -15.02 5.10 -322.52 -1.64 -16.66 16 10 C 0.21 4.48 2.47 44.25 0.11 4.59 16 11 H 0.09 1.82 6.34 -2.38 -0.02 1.81 16 12 C -0.16 -3.06 9.41 71.98 0.68 -2.38 16 13 C -0.17 -4.70 4.96 -19.83 -0.10 -4.80 16 14 C -0.06 -1.76 9.66 22.25 0.21 -1.54 16 15 C -0.20 -8.18 9.99 22.39 0.22 -7.96 16 16 C 0.12 5.55 6.65 22.57 0.15 5.70 16 17 O -0.23 -13.66 9.76 -22.69 -0.22 -13.88 16 18 C -0.41 -23.48 9.49 67.92 0.64 -22.84 16 19 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 20 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 21 N -0.92 -55.95 13.67 21.61 0.30 -55.65 16 22 Si 1.02 42.00 29.55 68.60 2.03 44.03 16 23 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 24 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 26 C -0.24 -9.77 9.17 22.39 0.21 -9.57 16 27 C -0.06 -1.81 9.05 22.25 0.20 -1.61 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 30 H 0.06 0.85 6.55 -2.39 -0.02 0.84 16 31 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.14 2.76 6.12 -2.91 -0.02 2.75 16 34 H 0.40 7.95 4.86 -92.71 -0.45 7.50 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.17 7.71 -2.39 -0.02 1.16 16 37 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.15 3.58 8.03 -2.91 -0.02 3.56 16 39 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 40 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 41 H 0.12 5.02 5.64 -2.91 -0.02 5.01 16 42 H 0.14 3.35 6.91 -2.91 -0.02 3.33 16 Total: -1.00 -68.54 353.27 6.26 -62.29 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.61 Total: 29.28 kcal Atomic # 6 Polarization: -51.07 SS G_CDS: 4.41 Total: -46.66 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -1.35 Total: -72.31 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.22 Total: -13.88 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.78 Total: -2.74 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -68.54 6.26 -62.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037212596.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.275 kcal (2) G-P(sol) polarization free energy of solvation -68.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds