Wall clock time and date at job start Tue Mar 31 2020 11:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38268 * 119.93654 * 2 1 4 4 C 1.38097 * 120.09548 * 180.02562 * 3 2 1 5 5 C 1.38942 * 119.97629 * 359.97438 * 4 3 2 6 6 N 1.39672 * 120.05905 * 179.97438 * 5 4 3 7 7 C 1.46499 * 119.99801 * 179.72333 * 6 5 4 8 8 H 1.09004 * 109.47074 * 325.27145 * 7 6 5 9 9 C 1.53001 * 109.47379 * 85.27025 * 7 6 5 10 10 C 1.50697 * 109.47167 * 205.27735 * 7 6 5 11 11 C 1.38302 * 119.92950 * 319.72091 * 10 7 6 12 12 C 1.38095 * 120.06949 * 179.72526 * 11 10 7 13 13 C 1.38879 * 119.93318 * 0.55374 * 12 11 10 14 14 O 1.35747 * 120.07379 * 179.74338 * 13 12 11 15 15 C 1.34826 * 117.00147 * 174.43739 * 14 13 12 16 16 H 1.08000 * 119.99822 * 5.06014 * 15 14 13 17 17 C 1.38656 * 120.00018 * 185.05522 * 15 14 13 18 18 N 1.31556 * 119.99977 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99989 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46858 * 60.00560 * 19 17 15 21 21 H 1.48499 * 109.47097 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47318 * 300.00387 * 19 17 15 23 23 C 1.38877 * 119.85945 * 359.72269 * 13 12 11 24 24 C 1.38103 * 119.93109 * 0.02562 * 23 13 12 25 25 C 1.38847 * 119.87703 * 0.25113 * 5 4 3 26 26 C 1.38340 * 119.90040 * 359.51802 * 25 5 4 27 27 F 1.35102 * 119.98778 * 180.23479 * 26 25 5 28 28 H 1.09000 * 109.47177 * 89.99909 * 1 2 3 29 29 H 1.08996 * 109.47401 * 209.99955 * 1 2 3 30 30 H 1.09003 * 109.46915 * 330.00816 * 1 2 3 31 31 H 1.08003 * 119.95187 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.00626 * 179.97438 * 4 3 2 33 33 H 0.96992 * 120.00025 * 359.97438 * 6 5 4 34 34 H 1.08992 * 109.47356 * 300.00348 * 9 7 6 35 35 H 1.08999 * 109.46493 * 60.00164 * 9 7 6 36 36 H 1.09005 * 109.47212 * 179.97438 * 9 7 6 37 37 H 1.08008 * 119.96537 * 0.02562 * 11 10 7 38 38 H 1.08010 * 120.03533 * 180.27342 * 12 11 10 39 39 H 0.97003 * 120.00200 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.04033 * 179.97438 * 23 13 12 41 41 H 1.08002 * 119.96692 * 180.02562 * 24 23 13 42 42 H 1.08003 * 120.04642 * 179.75192 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5780 1.2020 -0.0005 5 6 4.2756 0.0004 -0.0005 6 7 5.6723 0.0023 -0.0016 7 6 6.4064 -1.2655 0.0045 8 1 5.8580 -2.0001 0.5943 9 6 6.5580 -1.7741 -1.4305 10 6 7.7704 -1.0532 0.6090 11 6 8.4874 0.0910 0.3097 12 6 9.7352 0.2911 0.8665 13 6 10.2749 -0.6633 1.7188 14 8 11.5034 -0.4719 2.2636 15 6 11.9190 -1.3790 3.1704 16 1 11.3192 -2.2540 3.3728 17 6 13.1164 -1.1885 3.8430 18 7 13.8468 -0.1223 3.5967 19 14 13.6926 -2.4456 5.0988 20 1 13.8583 -3.7651 4.4380 21 1 14.9918 -2.0122 5.6728 22 1 12.6854 -2.5585 6.1842 23 6 9.5549 -1.8139 2.0129 24 6 8.3054 -2.0058 1.4570 25 6 3.5816 -1.2022 -0.0053 26 6 2.1982 -1.2001 0.0001 27 9 1.5212 -2.3693 0.0003 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5137 31 1 1.6552 2.1325 0.0004 32 1 4.1155 2.1388 -0.0010 33 1 6.1561 0.8429 -0.0027 34 1 5.5715 -1.9276 -1.8677 35 1 7.1064 -1.0395 -2.0202 36 1 7.1047 -2.7171 -1.4260 37 1 8.0689 0.8310 -0.3565 38 1 10.2927 1.1870 0.6358 39 1 14.6843 0.0112 4.0675 40 1 9.9720 -2.5582 2.6750 41 1 7.7448 -2.9002 1.6857 42 1 4.1211 -2.1378 -0.0093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037213133.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:53 Heat of formation + Delta-G solvation = -28.458752 kcal Electronic energy + Delta-G solvation = -24620.922136 eV Core-core repulsion = 20866.619525 eV Total energy + Delta-G solvation = -3754.302611 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.95333 -39.82614 -39.06454 -37.41584 -35.58483 -32.78831 -32.17235 -30.76726 -30.38552 -29.88221 -28.09989 -25.95220 -25.47756 -23.49834 -22.48661 -22.20900 -21.24715 -20.14356 -18.26238 -17.88498 -17.25538 -16.49378 -15.98365 -15.74316 -15.43536 -15.05823 -14.69878 -14.57069 -14.09913 -14.01887 -13.78809 -13.61671 -13.50358 -13.38402 -13.15137 -12.83495 -12.71445 -12.50849 -12.37186 -12.05548 -11.75699 -11.67454 -11.61762 -11.28757 -11.10902 -10.86163 -10.81037 -10.55609 -10.50991 -9.91882 -9.43984 -8.90687 -8.89491 -8.32271 -7.45276 -7.30901 -6.53009 -4.12173 1.15420 1.35809 2.08052 2.13386 3.08373 3.09352 3.12470 3.36973 3.59327 3.90124 4.26029 4.43442 4.62516 4.79339 4.90680 4.98423 5.00310 5.15826 5.17808 5.25362 5.34969 5.43433 5.45178 5.55169 5.56105 5.64792 5.74847 5.80457 5.85927 5.94356 6.02397 6.08726 6.16573 6.19470 6.31632 6.34497 6.54616 6.70842 6.78175 6.93719 7.04972 7.19986 7.32201 7.34477 7.66017 7.69664 7.91269 8.92204 9.60353 10.64500 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026461 B = 0.002318 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.888386 B =12075.097337 C =12335.742069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.192 4.192 3 C -0.043 4.043 4 C -0.207 4.207 5 C 0.250 3.750 6 N -0.729 5.729 7 C 0.203 3.797 8 H 0.078 0.922 9 C -0.161 4.161 10 C -0.196 4.196 11 C -0.066 4.066 12 C -0.190 4.190 13 C 0.156 3.844 14 O -0.174 6.174 15 C -0.394 4.394 16 H 0.092 0.908 17 C 0.040 3.960 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.269 1.269 23 C -0.231 4.231 24 C -0.058 4.058 25 C -0.237 4.237 26 C 0.145 3.855 27 F -0.141 7.141 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.402 0.598 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.272 0.728 40 H 0.129 0.871 41 H 0.108 0.892 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.454 0.058 -7.562 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.195 4.195 3 C -0.062 4.062 4 C -0.230 4.230 5 C 0.144 3.856 6 N -0.356 5.356 7 C 0.098 3.902 8 H 0.096 0.904 9 C -0.220 4.220 10 C -0.197 4.197 11 C -0.085 4.085 12 C -0.209 4.209 13 C 0.101 3.899 14 O -0.077 6.077 15 C -0.470 4.470 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.194 1.194 23 C -0.250 4.250 24 C -0.077 4.077 25 C -0.261 4.261 26 C 0.125 3.875 27 F -0.120 7.120 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.239 0.761 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.136 0.864 39 H 0.082 0.918 40 H 0.146 0.854 41 H 0.126 0.874 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.937 0.097 -7.506 21.304 hybrid contribution 0.514 -0.584 0.668 1.025 sum -19.423 -0.487 -6.839 20.598 Atomic orbital electron populations 1.20553 0.90760 1.02596 1.01985 1.19592 0.96593 0.91852 1.11429 1.20572 0.93194 0.96714 0.95705 1.20642 0.94281 0.96509 1.11588 1.17543 0.84125 0.92837 0.91103 1.45124 1.01794 1.08805 1.79918 1.19585 0.89730 0.85298 0.95575 0.90427 1.22266 1.01497 1.01739 0.96458 1.19181 0.96471 0.98328 1.05719 1.20297 0.93715 0.96207 0.98269 1.20178 0.96969 1.00246 1.03546 1.19403 0.85748 0.92651 0.92049 1.83976 1.25239 1.48340 1.50158 1.21293 1.06022 1.02413 1.17268 0.89030 1.25310 0.95406 0.97723 0.98022 1.70025 1.13154 1.25998 1.40287 0.85767 0.78401 0.79493 0.79719 1.19432 1.20209 1.19436 1.21146 0.96723 1.00091 1.07049 1.20539 0.94865 0.97320 0.94999 1.20532 0.92322 0.98414 1.14835 1.17206 0.89298 0.80631 1.00383 1.91457 1.80267 1.46555 1.93711 0.91760 0.91872 0.91608 0.85421 0.85662 0.76092 0.92748 0.92205 0.91578 0.87395 0.86423 0.91845 0.85376 0.87372 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 9.83 36.01 0.35 -0.49 16 2 C -0.19 -2.01 5.89 -104.51 -0.62 -2.63 16 3 C -0.04 -0.41 9.69 -39.62 -0.38 -0.79 16 4 C -0.21 -2.13 9.89 -39.37 -0.39 -2.52 16 5 C 0.25 2.90 6.64 -83.80 -0.56 2.35 16 6 N -0.73 -8.48 5.20 -53.30 -0.28 -8.76 16 7 C 0.20 2.54 2.46 -69.08 -0.17 2.37 16 8 H 0.08 0.96 6.35 -51.93 -0.33 0.63 16 9 C -0.16 -1.84 9.40 37.16 0.35 -1.49 16 10 C -0.20 -3.04 4.96 -104.58 -0.52 -3.56 16 11 C -0.07 -1.08 9.04 -39.61 -0.36 -1.43 16 12 C -0.19 -3.79 9.99 -39.40 -0.39 -4.18 16 13 C 0.16 3.61 6.65 -39.11 -0.26 3.35 16 14 O -0.17 -4.84 9.76 0.07 0.00 -4.83 16 15 C -0.39 -10.73 9.49 30.89 0.29 -10.44 16 16 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -24.74 13.67 55.48 0.76 -23.98 16 19 Si 0.94 20.08 29.55 -169.99 -5.02 15.05 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.23 -4.78 9.17 -39.39 -0.36 -5.14 16 24 C -0.06 -1.00 9.66 -39.61 -0.38 -1.39 16 25 C -0.24 -2.84 8.82 -39.32 -0.35 -3.19 16 26 C 0.14 1.73 7.24 -39.45 -0.29 1.44 16 27 F -0.14 -1.75 16.47 2.25 0.04 -1.71 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.53 7.63 -51.93 -0.40 0.14 16 30 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.40 4.41 6.89 -40.82 -0.28 4.13 16 34 H 0.05 0.58 7.69 -51.93 -0.40 0.18 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.11 1.43 6.93 -52.48 -0.36 1.06 16 38 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 40 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 41 H 0.11 1.57 8.03 -52.49 -0.42 1.15 16 42 H 0.13 1.54 6.09 -52.48 -0.32 1.22 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -29.49 355.73 -8.44 -37.93 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.17 Total: 7.69 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -4.12 Total: -26.74 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.48 Total: -32.74 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: 0.00 Total: -4.83 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.49 -8.44 -37.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037213133.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.471 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds