Wall clock time and date at job start Tue Mar 31 2020 11:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38268 * 119.93654 * 2 1 4 4 C 1.38097 * 120.09548 * 180.02562 * 3 2 1 5 5 C 1.38942 * 119.97629 * 359.97438 * 4 3 2 6 6 N 1.39672 * 120.05905 * 179.97438 * 5 4 3 7 7 C 1.46499 * 119.99801 * 179.72333 * 6 5 4 8 8 H 1.09004 * 109.47074 * 325.27145 * 7 6 5 9 9 C 1.53001 * 109.47379 * 85.27025 * 7 6 5 10 10 C 1.50697 * 109.47167 * 205.27735 * 7 6 5 11 11 C 1.38302 * 119.92950 * 319.72091 * 10 7 6 12 12 C 1.38095 * 120.06949 * 179.72526 * 11 10 7 13 13 C 1.38879 * 119.93318 * 0.55374 * 12 11 10 14 14 O 1.35747 * 120.07379 * 179.74338 * 13 12 11 15 15 C 1.34826 * 117.00147 * 174.43739 * 14 13 12 16 16 H 1.08000 * 119.99822 * 5.06014 * 15 14 13 17 17 C 1.38656 * 120.00018 * 185.05522 * 15 14 13 18 18 N 1.31556 * 119.99977 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99989 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46858 * 60.00560 * 19 17 15 21 21 H 1.48499 * 109.47097 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47318 * 300.00387 * 19 17 15 23 23 C 1.38877 * 119.85945 * 359.72269 * 13 12 11 24 24 C 1.38103 * 119.93109 * 0.02562 * 23 13 12 25 25 C 1.38847 * 119.87703 * 0.25113 * 5 4 3 26 26 C 1.38340 * 119.90040 * 359.51802 * 25 5 4 27 27 F 1.35102 * 119.98778 * 180.23479 * 26 25 5 28 28 H 1.09000 * 109.47177 * 89.99909 * 1 2 3 29 29 H 1.08996 * 109.47401 * 209.99955 * 1 2 3 30 30 H 1.09003 * 109.46915 * 330.00816 * 1 2 3 31 31 H 1.08003 * 119.95187 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.00626 * 179.97438 * 4 3 2 33 33 H 0.96992 * 120.00025 * 359.97438 * 6 5 4 34 34 H 1.08992 * 109.47356 * 300.00348 * 9 7 6 35 35 H 1.08999 * 109.46493 * 60.00164 * 9 7 6 36 36 H 1.09005 * 109.47212 * 179.97438 * 9 7 6 37 37 H 1.08008 * 119.96537 * 0.02562 * 11 10 7 38 38 H 1.08010 * 120.03533 * 180.27342 * 12 11 10 39 39 H 0.97003 * 120.00200 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.04033 * 179.97438 * 23 13 12 41 41 H 1.08002 * 119.96692 * 180.02562 * 24 23 13 42 42 H 1.08003 * 120.04642 * 179.75192 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5780 1.2020 -0.0005 5 6 4.2756 0.0004 -0.0005 6 7 5.6723 0.0023 -0.0016 7 6 6.4064 -1.2655 0.0045 8 1 5.8580 -2.0001 0.5943 9 6 6.5580 -1.7741 -1.4305 10 6 7.7704 -1.0532 0.6090 11 6 8.4874 0.0910 0.3097 12 6 9.7352 0.2911 0.8665 13 6 10.2749 -0.6633 1.7188 14 8 11.5034 -0.4719 2.2636 15 6 11.9190 -1.3790 3.1704 16 1 11.3192 -2.2540 3.3728 17 6 13.1164 -1.1885 3.8430 18 7 13.8468 -0.1223 3.5967 19 14 13.6926 -2.4456 5.0988 20 1 13.8583 -3.7651 4.4380 21 1 14.9918 -2.0122 5.6728 22 1 12.6854 -2.5585 6.1842 23 6 9.5549 -1.8139 2.0129 24 6 8.3054 -2.0058 1.4570 25 6 3.5816 -1.2022 -0.0053 26 6 2.1982 -1.2001 0.0001 27 9 1.5212 -2.3693 0.0003 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5137 31 1 1.6552 2.1325 0.0004 32 1 4.1155 2.1388 -0.0010 33 1 6.1561 0.8429 -0.0027 34 1 5.5715 -1.9276 -1.8677 35 1 7.1064 -1.0395 -2.0202 36 1 7.1047 -2.7171 -1.4260 37 1 8.0689 0.8310 -0.3565 38 1 10.2927 1.1870 0.6358 39 1 14.6843 0.0112 4.0675 40 1 9.9720 -2.5582 2.6750 41 1 7.7448 -2.9002 1.6857 42 1 4.1211 -2.1378 -0.0093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037213133.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:52 Heat of formation + Delta-G solvation = -43.704796 kcal Electronic energy + Delta-G solvation = -24621.583254 eV Core-core repulsion = 20866.619525 eV Total energy + Delta-G solvation = -3754.963729 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.84597 -41.05911 -40.31655 -38.82218 -36.78485 -34.37072 -33.48885 -31.95254 -31.49676 -30.86837 -29.44564 -27.38911 -26.73287 -24.51447 -23.68299 -23.58651 -22.20965 -21.42932 -19.84606 -19.04252 -18.83052 -17.59028 -16.88854 -16.63981 -16.56573 -16.32863 -16.17555 -15.83034 -15.55518 -15.41901 -15.13439 -14.78260 -14.51643 -14.35479 -14.16075 -14.06173 -13.91299 -13.64339 -13.52755 -13.21294 -13.00306 -12.88744 -12.67889 -12.44162 -12.39113 -12.29255 -12.16351 -11.90522 -11.81451 -11.21366 -10.83954 -10.72838 -9.82889 -9.72524 -8.96884 -8.48780 -8.30791 -6.16999 0.33037 0.53482 0.55093 0.62486 1.34467 1.44568 1.50370 2.16494 2.41568 2.77719 2.81448 3.13683 3.43164 3.47507 3.76260 3.85758 4.03627 4.06801 4.13489 4.22326 4.32959 4.40249 4.43540 4.51944 4.64008 4.69678 4.81239 4.85726 4.86188 4.92702 5.00897 5.10581 5.14351 5.16137 5.22732 5.27288 5.31528 5.39050 5.50771 5.58131 5.68330 5.68882 5.94756 6.00603 6.14980 6.37842 6.80317 6.95896 7.75779 8.73908 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026461 B = 0.002318 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.888386 B =12075.097337 C =12335.742069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.194 4.194 3 C -0.042 4.042 4 C -0.206 4.206 5 C 0.238 3.762 6 N -0.730 5.730 7 C 0.208 3.792 8 H 0.085 0.915 9 C -0.157 4.157 10 C -0.166 4.166 11 C -0.055 4.055 12 C -0.200 4.200 13 C 0.115 3.885 14 O -0.230 6.230 15 C -0.414 4.414 16 H 0.102 0.898 17 C -0.022 4.022 18 N -0.919 5.919 19 Si 1.017 2.983 20 H -0.257 1.257 21 H -0.272 1.272 22 H -0.258 1.258 23 C -0.240 4.240 24 C -0.059 4.059 25 C -0.248 4.248 26 C 0.122 3.878 27 F -0.149 7.149 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.157 0.843 32 H 0.143 0.857 33 H 0.406 0.594 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.147 0.853 38 H 0.115 0.885 39 H 0.273 0.727 40 H 0.119 0.881 41 H 0.141 0.859 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.662 -0.196 -8.319 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.197 4.197 3 C -0.061 4.061 4 C -0.229 4.229 5 C 0.133 3.867 6 N -0.359 5.359 7 C 0.103 3.897 8 H 0.103 0.897 9 C -0.215 4.215 10 C -0.167 4.167 11 C -0.073 4.073 12 C -0.220 4.220 13 C 0.064 3.936 14 O -0.137 6.137 15 C -0.490 4.490 16 H 0.119 0.881 17 C -0.220 4.220 18 N -0.557 5.557 19 Si 0.837 3.163 20 H -0.181 1.181 21 H -0.197 1.197 22 H -0.182 1.182 23 C -0.259 4.259 24 C -0.078 4.078 25 C -0.271 4.271 26 C 0.102 3.898 27 F -0.128 7.128 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.174 0.826 32 H 0.161 0.839 33 H 0.244 0.756 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.165 0.835 38 H 0.133 0.867 39 H 0.082 0.918 40 H 0.137 0.863 41 H 0.159 0.841 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.221 -0.163 -8.297 24.660 hybrid contribution 1.083 -0.453 0.676 1.354 sum -22.138 -0.616 -7.621 23.422 Atomic orbital electron populations 1.20616 0.89332 1.03254 1.02754 1.19954 0.97857 0.91688 1.10241 1.20927 0.93117 0.97509 0.94546 1.20938 0.94779 0.96765 1.10402 1.17633 0.83922 0.93236 0.91950 1.44947 1.01912 1.08365 1.80702 1.19521 0.87721 0.86188 0.96226 0.89704 1.22220 1.02199 1.01752 0.95373 1.19642 0.97432 0.96730 1.02920 1.20677 0.91970 0.97143 0.97545 1.20444 0.98405 0.99761 1.03359 1.19977 0.85553 0.94647 0.93425 1.83941 1.27857 1.49714 1.52183 1.21770 1.06651 1.02929 1.17673 0.88083 1.26579 0.95283 1.00009 1.00146 1.70171 1.14096 1.28778 1.42678 0.84663 0.77992 0.76814 0.76873 1.18121 1.19661 1.18247 1.21241 0.98002 0.99230 1.07436 1.20900 0.93582 0.98878 0.94393 1.20611 0.92528 0.98713 1.15267 1.17468 0.89602 0.80989 1.01735 1.91432 1.80397 1.47068 1.93923 0.90878 0.92479 0.89734 0.82567 0.83891 0.75624 0.91730 0.92215 0.91363 0.83545 0.86700 0.91811 0.86279 0.84132 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 9.83 71.24 0.70 -0.71 16 2 C -0.19 -3.56 5.89 -19.80 -0.12 -3.68 16 3 C -0.04 -0.65 9.69 22.24 0.22 -0.44 16 4 C -0.21 -3.51 9.89 22.41 0.22 -3.28 16 5 C 0.24 4.79 6.64 38.21 0.25 5.05 16 6 N -0.73 -14.46 5.20 -322.54 -1.68 -16.13 16 7 C 0.21 4.50 2.46 44.24 0.11 4.61 16 8 H 0.09 1.80 6.35 -2.38 -0.02 1.78 16 9 C -0.16 -3.05 9.40 71.98 0.68 -2.37 16 10 C -0.17 -4.70 4.96 -19.83 -0.10 -4.80 16 11 C -0.06 -1.67 9.04 22.25 0.20 -1.46 16 12 C -0.20 -8.05 9.99 22.39 0.22 -7.83 16 13 C 0.11 5.52 6.65 22.58 0.15 5.67 16 14 O -0.23 -13.63 9.76 -22.67 -0.22 -13.85 16 15 C -0.41 -23.78 9.49 67.92 0.64 -23.14 16 16 H 0.10 5.31 5.20 -2.91 -0.02 5.29 16 17 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 18 N -0.92 -55.91 13.67 21.61 0.30 -55.61 16 19 Si 1.02 42.36 29.55 68.60 2.03 44.39 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 23 C -0.24 -10.04 9.17 22.39 0.21 -9.83 16 24 C -0.06 -1.91 9.66 22.25 0.21 -1.70 16 25 C -0.25 -5.37 8.82 22.44 0.20 -5.17 16 26 C 0.12 2.68 7.24 22.35 0.16 2.85 16 27 F -0.15 -3.53 16.47 44.97 0.74 -2.79 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.85 7.63 -2.39 -0.02 0.84 16 30 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 32 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.41 7.35 6.89 -92.71 -0.64 6.71 16 34 H 0.06 1.17 7.69 -2.39 -0.02 1.15 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.15 3.31 6.93 -2.91 -0.02 3.29 16 38 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 39 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.12 5.11 5.64 -2.91 -0.02 5.09 16 41 H 0.14 3.64 8.03 -2.91 -0.02 3.61 16 42 H 0.13 2.78 6.09 -2.91 -0.02 2.76 16 Total: -1.00 -69.00 355.73 6.01 -62.99 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.42 Total: 28.04 kcal Atomic # 6 Polarization: -51.47 SS G_CDS: 4.43 Total: -47.04 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.38 Total: -71.74 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.22 Total: -13.85 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.74 Total: -2.79 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -69.00 6.01 -62.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037213133.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.287 kcal (2) G-P(sol) polarization free energy of solvation -69.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds